LOCUS       NC_003452               2404 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  American plum line pattern virus RNA2, complete genome.
ACCESSION   NC_003452
VERSION     NC_003452.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      American plum line pattern virus
  ORGANISM  American plum line pattern virus
            Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
            Martellivirales; Bromoviridae; Ilarvirus.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Scott,S.W. and Zimmerman,M.T.
  TITLE     American plum line pattern virus is a distinct ilarvirus
  JOURNAL   Acta Hortic. 550, 221-225 (2001)
REFERENCE   2  (bases 1 to 2404)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2002) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2404)
  AUTHORS   Zimmerman,M.T. and Scott,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2000) Plant Pathology & Physiology, Clemson
            University, P.O. Box 340377, Clemson, SC 29634-0377, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AF235165.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="American plum line pattern virus"
                     /mol_type="genomic RNA"
                     /db_xref="taxon:134632"
                     /segment="RNA 2"
                     /note="complete sequence of RNA2"
     gene            12..2234
                     /locus_tag="APLPVsRNA2gp1"
                     /db_xref="GeneID:984278"
     CDS             12..2234
                     /locus_tag="APLPVsRNA2gp1"
                     /codon_start=1
                     /product="putative polymerase p2"
                     /protein_id="NP_602313.1"
                     /db_xref="GeneID:984278"
                     /translation="MDFLRVPLIENYLSFDGVVRSTLEKLLPYEPPVVVNPLAQRVLL
                     GMNCLLGCYRANADKPIMFWIVPMLRLATVSRGFKSITVCFQNWWNIMTILQLRLESW
                     RRCSSHKTVWDTYDVAVANMNFTPEFADMFFFSLEVDLCDDECIEVEDGGHPETVDVL
                     PCEMPLFEADTSSLGVGREKRVVSVPEPCWFEETFSLDRDVQVSSLNLQFDNTVVKQV
                     VKYVPDNSPVLGSPFQGFNSGCVSDAIEEVLPHHTLSDDRFDQVWVEACDIYLDFQGS
                     LDLSKFNDVDPNLNCWEPVYNTGLPSTRYTSQREAVLAIKKRNLNVPTLTDCCDVDAL
                     STEVVDKFFSTFIDLEKFASFPNDLLGVGWFLDDYLKRKQVPEDLYLQELSMLSVDKY
                     RHMIKSQLKPPLEDVLHLERALPATITYHTKDKVAASTPFFLAISAKLLNVLNSKVVI
                     PSGKDHQLFSIDPYIFKEVKFWKEIDYSKFDKSQGRLHHEIQRKLFRRLHSNPDYDNF
                     IETWFSAHMRSKIYDRDAGVGFSTDYQRRTGDACTYLGNTLVTLCTLSYIYDLTSPNV
                     GLVVASGDDSLIGTIKHLLPRDKEQFCSTLFNFETKFPHNQPFICSKFLVLDQLENGG
                     ERVNAYPDPYKLLIRVGVKFMTNTKFESWAESFFDSFSCYSTIESVSKVVEMAGYRYI
                     RNSPKFLLPALHHLKYLCRSRDALRAGLFGKEYSSAHCRNSRTRSDTTTKTVKKRGKR
                     "
     misc_feature    813..1934
                     /locus_tag="APLPVsRNA2gp1"
                     /note="RNA-dependent RNA polymerase (RdRp) in the family
                     Bromoviridae of positive-sense single-stranded RNA
                     [(+)ssRNA] viruses; Region: Bromoviridae_RdRp; cd23252"
                     /db_xref="CDD:438102"
     misc_feature    1422..1466
                     /locus_tag="APLPVsRNA2gp1"
                     /note="conserved polymerase motif A; other site"
                     /db_xref="CDD:438102"
     misc_feature    1617..1688
                     /locus_tag="APLPVsRNA2gp1"
                     /note="conserved polymerase motif B; other site"
                     /db_xref="CDD:438102"
     misc_feature    1710..1754
                     /locus_tag="APLPVsRNA2gp1"
                     /note="conserved polymerase motif C; other site"
                     /db_xref="CDD:438102"
ORIGIN      
        1 gtcttttcag catggatttt ctccgtgtac cattaattga aaattacctt tctttcgacg
       61 gggtcgttcg ttcgaccctt gagaaattgc tcccttatga accacctgtt gttgtcaatc
      121 cgttggctca acgagttcta cttgggatga attgcttgct aggttgttac cgcgcaaatg
      181 cagacaaacc aattatgttt tggattgtcc cgatgttacg tctggctacg gtgagtcgtg
      241 ggttcaagag tattaccgtc tgtttccaga attggtggaa tataatgacg atactccagt
      301 tgagactgga aagttggaga cgatgttcct ctcataaaac agtctgggac acctatgatg
      361 tcgcagttgc caatatgaat ttcacacctg agttcgctga tatgttcttc ttttcacttg
      421 aggtggactt atgtgatgac gaatgtattg aagttgagga cggaggtcac ccggagacgg
      481 ttgacgttct tccttgtgag atgcctttgt ttgaggcaga tacttcttcc ctcggtgtcg
      541 ggagggaaaa gagagttgta tcagttcctg aaccgtgttg gtttgaggaa accttctctt
      601 tggaccgaga cgttcaagtt tcgagtctga atctacaatt cgacaatact gtcgtgaagc
      661 aggttgtcaa atatgtgcca gacaattcgc cagtactcgg gtcccctttt caagggttta
      721 attccgggtg cgtgtctgat gccatcgaag aggtgttacc gcatcacact ctctccgatg
      781 atagattcga tcaagtttgg gtcgaggcgt gtgatatata cctagacttc caaggttctt
      841 tggacctgtc gaaatttaac gatgttgacc ccaatttgaa ttgttgggaa cctgtgtata
      901 acaccggttt accgtcaact cgttatacct ctcagcgaga agccgtttta gcaataaaga
      961 aacggaattt gaacgtaccg acgttgaccg actgttgtga tgtcgatgca ttgtcgactg
     1021 aagtagtcga taagttcttt tcgactttta ttgatctcga aaaatttgcc tcatttccca
     1081 atgatttgct gggtgtggga tggttcttag acgattattt aaaaagaaaa caagtgcctg
     1141 aggatttata tcttcaagaa ctttcgatgc tgtcagttga taagtacagg catatgatta
     1201 agtcgcaatt gaaacctccc cttgaggatg ttttgcatct cgaaagggct ttgcctgcga
     1261 ctattactta tcatactaaa gacaaagtgg cggcttcgac cccctttttc ttggcgattt
     1321 cagcgaaatt gctaaatgtc ctgaattcta aagtcgtgat tcccagtgga aaagaccacc
     1381 aattattttc aattgatcct tatattttta aggaagtgaa attttggaaa gagatagact
     1441 attcaaaatt tgacaaatca cagggacgac ttcaccatga gattcagagg aagcttttta
     1501 ggaggctgca ttcgaacccc gattacgata attttatcga aacgtggttt tccgctcata
     1561 tgaggagtaa gatctacgac agggatgctg gagtaggttt ttccaccgat tatcaacgaa
     1621 gaaccggtga tgcgtgcact tacttgggaa acactttggt aactttgtgc acattgtcat
     1681 atatttatga tttaacaagt cctaatgtgg gcttagtcgt tgcatcggga gatgacagtt
     1741 tgatcggtac gattaaacat cttttgcctc gcgataagga acagttttgt tcgactttgt
     1801 tcaattttga gacaaagttt cctcacaatc aacctttcat ttgtagtaaa tttctggtcc
     1861 tcgatcagtt agaaaatgga ggtgagagag tgaatgccta ccccgatccc tataagcttt
     1921 taattagggt gggggtgaag tttatgacaa acacgaagtt tgagtcttgg gcagaatctt
     1981 tttttgattc gttctcgtgt tactcgacaa tagagtctgt gtcgaaagtt gtggaaatgg
     2041 cggggtatag atatattagg aatagtccta aatttctgtt acccgcttta caccatttaa
     2101 agtacctgtg tcgcagtcgt gatgcactgc gtgcgggtct ttttggtaaa gagtattcct
     2161 cagcgcattg taggaatagt cggacgaggt ccgacactac tacaaaaacg gtgaagaagc
     2221 gggggaaacg ttagtgaccc cggtttacta gtccattgga ctaatggaaa tcccattggg
     2281 tcgttgactt tgtcaacgag ttaactacga tgtcggccct aggacatcta tcgagctaac
     2341 gacgatcgct ttgcgattat gcttcatttt tcctttcggg aaaatgaaat gacccttagg
     2401 ggcc
//