LOCUS NC_003542 2173 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Cowpea chlorotic mottle virus RNA 3, complete sequence.
ACCESSION NC_003542
VERSION NC_003542.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Cowpea chlorotic mottle virus
ORGANISM Cowpea chlorotic mottle virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Martellivirales; Bromoviridae; Bromovirus.
REFERENCE 1 (bases 1 to 2173)
AUTHORS Allison,R.F., Janda,M. and Ahlquist,P.
TITLE Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence
of a recombination event during bromovirus evolution
JOURNAL Virology 172 (1), 321-330 (1989)
PUBMED 2773323
REFERENCE 2 (bases 1 to 2173)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from M28818.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2173
/organism="Cowpea chlorotic mottle virus"
/mol_type="genomic RNA"
/db_xref="taxon:12303"
/segment="RNA 3"
gene 239..1147
/locus_tag="CCMVs3gp1"
/db_xref="GeneID:962151"
CDS 239..1147
/locus_tag="CCMVs3gp1"
/note="3a protein"
/codon_start=1
/product="movement protein"
/protein_id="NP_613276.1"
/db_xref="GeneID:962151"
/translation="MSNTTFRPFTGSSRTVVEGEQAGAQDDMSLLQSLFSDKSREEFA
KECKLGMYTNLSSNNRLNYIDLVPKNTGSRALNLFKSEYEKGHIPSSGVLSIPRVLVF
LVRTTTVTESGSVTIRLVDLISASSVEILEPVDGTQEATIPISSLPAIVCFSPSYDCP
MQMIGNRHRCFGLVTQLDGVISSGSTVVMSHAYWSANFRSKPNNYKQYAPMYKYVEPF
DRLKRLSRKQLKNYVRGITNQSVNHGYLLGKPLLKTDEQDPEMIVLEEESLTPTDSNG
VGKDKIAVTAKSVAGLPTASLSINRR"
misc_feature 299..943
/locus_tag="CCMVs3gp1"
/note="3A/RNA2 movement protein family; Region: 3A;
pfam00803"
/db_xref="CDD:279181"
gene 1360..1932
/locus_tag="CCMVs3gp2"
/db_xref="GeneID:962152"
CDS 1360..1932
/locus_tag="CCMVs3gp2"
/codon_start=1
/product="coat protein"
/protein_id="NP_613277.1"
/db_xref="GeneID:962152"
/translation="MSTVGTGKLTRAQRRAAARKNKRNTRVVQPVIVEPIASGQGKAI
KAWTGYSVSKWTASCAAAEAKVTSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVS
GTVKSCVTETQTTAAASFQVALAVADNSKDVVAAMYPEAFKGITLEQLTADLTIYLYS
SAALTEGDVIVHLEVEHVRPTFDDSFTPVY"
misc_feature 1363..1929
/locus_tag="CCMVs3gp2"
/note="Bromovirus coat protein; Region: Bromo_coat;
pfam01318"
/db_xref="CDD:279637"
ORIGIN
1 gtaatcttta ccaaacaact ttcaaacttt atagtttatg tagttgctgt gattcccgtg
61 agcagcgttt agattactga cttggacaca tcggtttttg aagcatcgga tagaggtgat
121 taacgctaaa ccgtaccata gtaggctgtt acctgactcg aactcaggcg gacgtcagct
181 gacattcacg gaatagttcg atatcataat tcctcgttct ttgctgttat agctcccgat
241 gtctaacact acttttagac cttttactgg ttcctccagg accgtggtcg agggagaaca
301 agccggcgcc caggatgata tgtcgttgtt acagtcactt ttttccgaca aatccaggga
361 ggagtttgct aaggagtgta agttgggtat gtataccaat ttatcctcta ataaccggct
421 taattatata gatctagtcc ccaagaacac tggtagtaga gctctgaact tatttaagtc
481 agagtatgaa aaaggtcaca ttccctccag cggtgtgctt agtataccta gagtgctggt
541 ttttcttgtg aggacgacaa cagtgactga atctgggagt gtcaccatta gattggttga
601 cttgataagc gcttcgtcgg ttgagatttt agaacctgtg gatggtacgc aagaggctac
661 tattcctatt tctagtcttc cggctatcgt ttgtttttct cctagttatg actgtcccat
721 gcagatgata gggaatagac acagatgttt cggtttggta actcaactgg atggtgtcat
781 atcctcaggg tctaccgtcg ttatgagtca tgcgtattgg tctgcgaact ttcgtagtaa
841 acctaataac tacaagcagt acgcacctat gtataagtat gtggaaccct ttgacaggtt
901 gaaacgtttg agccgtaaac aattgaaaaa ttatgttagg ggcataacga atcaatctgt
961 aaatcatggt tatctattgg gtaaaccact actgaagact gacgagcaag atccagagat
1021 gattgtgtta gaggaggaat cactaacccc taccgacagc aacggagtcg gcaaggataa
1081 aatcgccgta accgctaaat ccgttgcggg gcttccgacg gcctcgttgt ctatcaatcg
1141 tagatagcta gatctattgc taacagactt agtgtcatgg gagcaaaact catatgaggt
1201 cagtgaaaca tgaattggga agaatcagaa cccgccgaaa ggacaggctg agggcgtacg
1261 attcatgtgt agctggctgg gtgtgagaca caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1321 aaaaaaaaaa atctatgttt aatttgatag taatttatca tgtctacagt cggaacaggg
1381 aagttaactc gtgcacaacg aagggctgcg gcccgtaaga acaagcggaa cactcgtgtg
1441 gtccaacctg ttattgtaga acccatcgct tcaggccaag gcaaggctat taaagcatgg
1501 accggttaca gcgtatcgaa gtggaccgcc tcttgtgcgg ctgccgaagc taaagtaacc
1561 tcggctataa ctatctctct ccctaatgag ctatcgtccg aaaggaacaa gcagctcaag
1621 gtaggtagag ttttattatg gcttgggttg cttcccagtg ttagtggcac agtgaaatcc
1681 tgtgttacag agacgcagac tactgctgct gcctcctttc aggtggcatt agctgtggcc
1741 gacaactcga aagatgttgt cgctgctatg taccccgagg cgtttaaggg tataaccctt
1801 gaacaactca ccgcggattt aacgatctac ttgtacagca gtgcggctct cactgagggc
1861 gacgtcatcg tgcatttgga ggttgagcat gtcagaccta cgtttgacga ctctttcact
1921 ccggtgtatt agtgcccgct gaagagcgtt acactagtgt ggcctacttg aaggctagtt
1981 ataaccgttt ctttaaacgg taatcgttgt tgaaacgtct tccttttaca agaggattga
2041 gctgcccttg ggttttactc cttgaaccct tcggaagaac tctttggagt tcgtaccagt
2101 acctcacata gtgaggtaat aagactggtg ggcagcgcct agtcgaaaga ctaggtgatc
2161 tctaaggaga cca
//