LOCUS       NC_003542               2173 bp ss-RNA     linear   VRL 13-AUG-2018
DEFINITION  Cowpea chlorotic mottle virus RNA 3, complete sequence.
ACCESSION   NC_003542
VERSION     NC_003542.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Cowpea chlorotic mottle virus
  ORGANISM  Cowpea chlorotic mottle virus
            Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
            Martellivirales; Bromoviridae; Bromovirus.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Allison,R.F., Janda,M. and Ahlquist,P.
  TITLE     Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence
            of a recombination event during bromovirus evolution
  JOURNAL   Virology 172 (1), 321-330 (1989)
   PUBMED   2773323
REFERENCE   2  (bases 1 to 2173)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2002) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from M28818.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Cowpea chlorotic mottle virus"
                     /mol_type="genomic RNA"
                     /db_xref="taxon:12303"
                     /segment="RNA 3"
     gene            239..1147
                     /locus_tag="CCMVs3gp1"
                     /db_xref="GeneID:962151"
     CDS             239..1147
                     /locus_tag="CCMVs3gp1"
                     /note="3a protein"
                     /codon_start=1
                     /product="movement protein"
                     /protein_id="NP_613276.1"
                     /db_xref="GeneID:962151"
                     /translation="MSNTTFRPFTGSSRTVVEGEQAGAQDDMSLLQSLFSDKSREEFA
                     KECKLGMYTNLSSNNRLNYIDLVPKNTGSRALNLFKSEYEKGHIPSSGVLSIPRVLVF
                     LVRTTTVTESGSVTIRLVDLISASSVEILEPVDGTQEATIPISSLPAIVCFSPSYDCP
                     MQMIGNRHRCFGLVTQLDGVISSGSTVVMSHAYWSANFRSKPNNYKQYAPMYKYVEPF
                     DRLKRLSRKQLKNYVRGITNQSVNHGYLLGKPLLKTDEQDPEMIVLEEESLTPTDSNG
                     VGKDKIAVTAKSVAGLPTASLSINRR"
     misc_feature    299..943
                     /locus_tag="CCMVs3gp1"
                     /note="3A/RNA2 movement protein family; Region: 3A;
                     pfam00803"
                     /db_xref="CDD:279181"
     gene            1360..1932
                     /locus_tag="CCMVs3gp2"
                     /db_xref="GeneID:962152"
     CDS             1360..1932
                     /locus_tag="CCMVs3gp2"
                     /codon_start=1
                     /product="coat protein"
                     /protein_id="NP_613277.1"
                     /db_xref="GeneID:962152"
                     /translation="MSTVGTGKLTRAQRRAAARKNKRNTRVVQPVIVEPIASGQGKAI
                     KAWTGYSVSKWTASCAAAEAKVTSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVS
                     GTVKSCVTETQTTAAASFQVALAVADNSKDVVAAMYPEAFKGITLEQLTADLTIYLYS
                     SAALTEGDVIVHLEVEHVRPTFDDSFTPVY"
     misc_feature    1363..1929
                     /locus_tag="CCMVs3gp2"
                     /note="Bromovirus coat protein; Region: Bromo_coat;
                     pfam01318"
                     /db_xref="CDD:279637"
ORIGIN      
        1 gtaatcttta ccaaacaact ttcaaacttt atagtttatg tagttgctgt gattcccgtg
       61 agcagcgttt agattactga cttggacaca tcggtttttg aagcatcgga tagaggtgat
      121 taacgctaaa ccgtaccata gtaggctgtt acctgactcg aactcaggcg gacgtcagct
      181 gacattcacg gaatagttcg atatcataat tcctcgttct ttgctgttat agctcccgat
      241 gtctaacact acttttagac cttttactgg ttcctccagg accgtggtcg agggagaaca
      301 agccggcgcc caggatgata tgtcgttgtt acagtcactt ttttccgaca aatccaggga
      361 ggagtttgct aaggagtgta agttgggtat gtataccaat ttatcctcta ataaccggct
      421 taattatata gatctagtcc ccaagaacac tggtagtaga gctctgaact tatttaagtc
      481 agagtatgaa aaaggtcaca ttccctccag cggtgtgctt agtataccta gagtgctggt
      541 ttttcttgtg aggacgacaa cagtgactga atctgggagt gtcaccatta gattggttga
      601 cttgataagc gcttcgtcgg ttgagatttt agaacctgtg gatggtacgc aagaggctac
      661 tattcctatt tctagtcttc cggctatcgt ttgtttttct cctagttatg actgtcccat
      721 gcagatgata gggaatagac acagatgttt cggtttggta actcaactgg atggtgtcat
      781 atcctcaggg tctaccgtcg ttatgagtca tgcgtattgg tctgcgaact ttcgtagtaa
      841 acctaataac tacaagcagt acgcacctat gtataagtat gtggaaccct ttgacaggtt
      901 gaaacgtttg agccgtaaac aattgaaaaa ttatgttagg ggcataacga atcaatctgt
      961 aaatcatggt tatctattgg gtaaaccact actgaagact gacgagcaag atccagagat
     1021 gattgtgtta gaggaggaat cactaacccc taccgacagc aacggagtcg gcaaggataa
     1081 aatcgccgta accgctaaat ccgttgcggg gcttccgacg gcctcgttgt ctatcaatcg
     1141 tagatagcta gatctattgc taacagactt agtgtcatgg gagcaaaact catatgaggt
     1201 cagtgaaaca tgaattggga agaatcagaa cccgccgaaa ggacaggctg agggcgtacg
     1261 attcatgtgt agctggctgg gtgtgagaca caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1321 aaaaaaaaaa atctatgttt aatttgatag taatttatca tgtctacagt cggaacaggg
     1381 aagttaactc gtgcacaacg aagggctgcg gcccgtaaga acaagcggaa cactcgtgtg
     1441 gtccaacctg ttattgtaga acccatcgct tcaggccaag gcaaggctat taaagcatgg
     1501 accggttaca gcgtatcgaa gtggaccgcc tcttgtgcgg ctgccgaagc taaagtaacc
     1561 tcggctataa ctatctctct ccctaatgag ctatcgtccg aaaggaacaa gcagctcaag
     1621 gtaggtagag ttttattatg gcttgggttg cttcccagtg ttagtggcac agtgaaatcc
     1681 tgtgttacag agacgcagac tactgctgct gcctcctttc aggtggcatt agctgtggcc
     1741 gacaactcga aagatgttgt cgctgctatg taccccgagg cgtttaaggg tataaccctt
     1801 gaacaactca ccgcggattt aacgatctac ttgtacagca gtgcggctct cactgagggc
     1861 gacgtcatcg tgcatttgga ggttgagcat gtcagaccta cgtttgacga ctctttcact
     1921 ccggtgtatt agtgcccgct gaagagcgtt acactagtgt ggcctacttg aaggctagtt
     1981 ataaccgttt ctttaaacgg taatcgttgt tgaaacgtct tccttttaca agaggattga
     2041 gctgcccttg ggttttactc cttgaaccct tcggaagaac tctttggagt tcgtaccagt
     2101 acctcacata gtgaggtaat aagactggtg ggcagcgcct agtcgaaaga ctaggtgatc
     2161 tctaaggaga cca
//