LOCUS NC_003616 4972 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Impatiens necrotic spot virus segment M, complete sequence.
ACCESSION NC_003616
VERSION NC_003616.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Impatiens necrotic spot virus
ORGANISM Impatiens necrotic spot virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae;
Orthotospovirus; Orthotospovirus impatiensnecromaculae.
REFERENCE 1 (bases 1 to 4972)
AUTHORS Law,M.D., Speck,J. and Moyer,J.W.
TITLE The M RNA of impatiens necrotic spot Tospovirus (Bunyaviridae) has
an ambisense genomic organization
JOURNAL Virology 188 (2), 732-741 (1992)
PUBMED 1585644
REFERENCE 2 (bases 1 to 4972)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from M74904.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4972
/organism="Impatiens necrotic spot virus"
/mol_type="genomic RNA"
/db_xref="taxon:11612"
/segment="M"
gene 86..997
/locus_tag="INSVsMgp1"
/db_xref="GeneID:956572"
CDS 86..997
/locus_tag="INSVsMgp1"
/note="located on the middle (medium) RNA molecule"
/codon_start=1
/product="nonstructural protein"
/protein_id="NP_619690.1"
/db_xref="GeneID:956572"
/translation="MNSFFKSLRSSSSRELDHPRVTTTLSKQGADIVVHNPSANHNNK
EVLQRAMDSSKGKILMNNTGTSSLGTYESDQISESESYDLSARMIVDTNHHISSWKND
LFVGNGDKAATKIIKIHPTWDSRKQYMMISRIVIWICPTIADPDGKLAVALIDPNKSV
NARTVLKGQGSIKDPICFVFYLNWSIPKVNNTSENCVQLHLLCDQVYKKDVSFASVMY
SWTKEFCDSPRADLDKSCMIIPINRAIRAKSQAFIEACKLIIPKGNSEKQIRRQLAEL
SANLEKSVEEEENVTDNKIEISFDNEI"
misc_feature 215..910
/locus_tag="INSVsMgp1"
/note="3A/RNA2 movement protein family; Region: 3A;
pfam00803"
/db_xref="CDD:279181"
gene complement(1471..4803)
/locus_tag="INSVsMgp2"
/db_xref="GeneID:956573"
CDS complement(1471..4803)
/locus_tag="INSVsMgp2"
/note="located on the middle RNA molecule"
/codon_start=1
/product="G2-G1 polyprotein"
/protein_id="NP_619691.1"
/db_xref="GeneID:956573"
/translation="MALKETDAKIHVERGDHPEIYDEAYYDRSVDHKNEILDTLAEML
QNATGKTLRPTRDTQTVLANNEVPQSSSGLSSTPTTISIMDLPNPCLNASSLTCSIKG
VSTFNVYYQVESNGVIYSCISDTITKLGNCEGSSELPRSFETVPVVPITKIDNKRKLS
IGTKFYIIESLENYNYPIMYNSRPTNGTVSLQSVKFSGDCKISKTNIVNSYTVSLTTP
EKIMGYVVKREGSDMSHSIISFSGSVSLTFTEENMDGKHNLLCGDKSSKVPLVDKRVR
DCIIKYSKNIYKQTACINFSWFRLIMIALIVYFPIRYLVNKTSKTLFYGYDLLGLITY
PILLLINYLWSYFPLKCKVCGNLCLVTHECSKLCICNKNKASEEHSEECPIITRTAEK
NKKYNWASIEWFHLIVNTKIGLSFLKAVTETLIGFLILSQMPMSMAQTAQCLDSCYYV
PGCDRFVTNRYDKCPEKDQCFCAIKENSIVESNFLTNVVTEGPMDCIPYQECKGRITE
NALVTFVKCRFGCEYASIFQSKPLDNGFLEYSGDTLGLNAVNLHFMKRLRNGIIDFYN
KTEKYGYISGDALKSNESDIPESIFPRKSLIFDSVIDGKYRYMIEESLLSGGGTVFSL
NDKSSSTAQKFVVYIKKVRIQYDVSEQYTTAPIQSTHTDFFSTCTGKCSDCRKEQPIT
GYQDFCITPTSYWGCEEVWCLAINEGATCGFCRNVYDMDQSFRIYSVIKSTIKSEVCI
SGFVGAKCFTVSEEVPSESGYFQADILADFHNDGLTIGQLIAHGPDSHVYAGNIARLN
NPSKMFGHPQLSHQGDPIFSKKTLDTNDLSWDCSAIGKKTITIKSCGYDTYRFKTGLN
QISDIPVQFTDQNSFYMEKIFSLGKLKIVLDLPSELFKTVPKKPILSSVSLSCKGCFL
CSQGLRCAASFISDITFSARLTMKQCSLSTYQIAVKKGANKYNLTMFCTSNPEKQKMI
IEPEGDKSYSVEALVDSVAVLEPENIIDQNDQHAHEEQQYNSDTSVWSFWDYVKSPFN
FIASHFGSFFDTVRVVLLILFVFALAYLCSIVATMCRGYVRNKSYKTKYIEDTNDYSL
VSTSSGKDTITRRRPPLDFSGI"
misc_feature complement(1801..>3000)
/locus_tag="INSVsMgp2"
/note="Bunyavirus glycoprotein G1; Region: Bunya_G1;
pfam03557"
/db_xref="CDD:281546"
ORIGIN
1 agagcaatca gtgcatcaaa attatatcta gccgaattca atcattatct tctcaatatt
61 ttaattctta atctaccgtc cagagatgaa tagttttttc aaatcactca gatcatctag
121 cagcagggag ctagatcacc ctagggttac aactaccctc tctaaacaag gagcagacat
181 tgttgtacac aatccttctg ctaatcacaa caacaaggaa gttctccaaa gagccatgga
241 tagctctaaa gggaagattt tgatgaacaa tacaggcacc tcatcactag gcacatatga
301 gtctgaccag atatctgaat cagagtctta tgatctttct gctagaatga ttgttgatac
361 aaatcatcat atctccagct ggaaaaatga tctttttgta ggtaatggtg ataaagctgc
421 aaccaagata attaagatac atccaacctg ggatagcaga aaacaataca tgatgatctc
481 aaggatagtt atctggatat gccctactat agctgatcct gatgggaaat tggctgtagc
541 tttaattgat cctaacaaga gtgttaatgc cagaactgtt ttgaaagggc aaggaagcat
601 taaagatcct atatgttttg ttttttatct aaattggtcc attccaaaag ttaacaacac
661 ttcagagaat tgtgttcagc ttcatttatt atgtgatcaa gtttacaaga aagatgtttc
721 ttttgctagt gtcatgtatt cttggacaaa agaattctgt gattcaccaa gagcagatct
781 ggataaaagc tgcatgataa tacccatcaa tagggctatt agagccaaat cgcaagcctt
841 cattgaagcc tgcaagttaa tcatacctaa aggcaattct gaaaagcaaa ttagaagaca
901 acttgcagag ctaagtgcta atttagagaa atctgttgaa gaagaggaga atgttactga
961 taacaagata gagatatcat ttgataatga aatctaaata tgttttcatt taataataaa
1021 taatatatat tgttcataat attttgaatg tttaagtaaa aaataaagca agataaaaaa
1081 ctatatatat atatatatat agaagtataa aatatatatg tatttgtgtt taaaaacaaa
1141 tcaaaaacca aaaaagaaaa aagaaaaaat aaacaaaaaa caaaaacaaa aacaaaaaca
1201 aacaaaaagc aaaaaataga aaaaagttga aaaaaaccaa aaaaattttt tttgtaaata
1261 aataaggctc cggccagatt tggtctaaga cctttttatt tgtttttata cattttattt
1321 gtttttgttg atttttattt ttattatttt tatatttttt atatagtttg cttatttaac
1381 acttatttag acaaattaaa tttatttgat tacaatcatt ctgccttatt taatttaaaa
1441 cacatttggt gtatattcca atgaatttaa tcatataccg ctgaagtcta gaggaggtct
1501 tcttctagtg atggtgtctt taccagaaga cgtggaaacc aaagaataat cattagtgtc
1561 ttcaatatat tttgtcttgt aagacttgtt tctaacatag cctctacaca ttgtggcaac
1621 aatagagcag aggtaagcaa gagcaaatac aaagagtatg agcaatacta ctctgactgt
1681 atcaaagaag gatccaaagt ggcttgctat aaagttaaaa gggcttttaa catagtccca
1741 aaagctccaa actgatgtgt cagaattata ttgctgttcc tcgtgtgcat gttggtcatt
1801 ttgatcaatt atgttttctg gttccagcac agcaacagaa tctacaagtg cctcaactga
1861 gtatgatttg tctccttctg gttctataat cattttttgt ttttctgggt tagaagtgca
1921 gaacattgtc aagttatact tattagcacc tttctttact gctatctggt atgttgacaa
1981 tgaacattgt ttcatggtta accttgcaga aaaagttatg tctgatataa atgaggcagc
2041 acacctcagc ccttggctac ataagaaaca tcccttacag cttaaagaga cagaactcaa
2101 tataggcttt tttggtacag ttttaaacaa ttcagaaggt agatccaaaa caattttaag
2161 cttacctaga ctaaagatct tttccatata aaaactattc tggtcagtaa actgaactgg
2221 aatgtccgat atttggttca aacctgtttt aaatctgtat gtgtcataac cacatgattt
2281 tatcgtaatt gtttttttac caattgctga acaatcccag gacagatcgt ttgtatctaa
2341 tgttttctta gagaaaatgg gatcaccttg gtgtgaaagt tgaggatgac caaacatttt
2401 tgatggatta tttaatctag ctatgtttcc cgcatatacg tgactatcag gtccatgagc
2461 tatcagctgg cctattgtta agccatcatt atggaaatcc gctaatatat cagcctggaa
2521 atatcctgat tcagatggga cttcctcaga tacagtgaaa cactttgctc ccacaaatcc
2581 agatatacat acttcagact tgattgttga tttaataaca gaataaatcc tgaaagattg
2641 atccatatca tacacatttc tacaaaaccc acaagtggct ccttcattga tagccaaaca
2701 ccaaacctct tcacaacccc agtaagatgt tggtgttatg cagaaatctt gatacccagt
2761 tatcggttgt tcttttctgc aatctgagca tttacctgtg catgttgaaa agaaatcagt
2821 gtgggtgctt tgtataggag ctgtagtgta ttgttcagaa acatcatact gtattctaac
2881 ttttttaata taaacaacaa acttctgagc agtgctagaa cttttgtcat taagagagaa
2941 aactgtgccc ccacctgata ataaagattc ttctatcatg tatctatatt ttccatctat
3001 caccgagtca aatatgagag attttcttgg aaaaatgctt tcaggtatgt ctgattcatt
3061 agatttaagt gcatctccag aaatgtatcc atatttttca gttttattgt agaaatcaat
3121 tataccattc ctaagccttt tcatgaagtg tagattcaca gcattcaatc ccaatgtgtc
3181 accagaatat tctaagaacc cattatctaa aggcttgctt tggaaaatag aggcatactc
3241 acaaccaaat ctgcatttga caaaagttac taaagcattt tcagttatcc tgcctttgca
3301 ttcttgataa ggtatacaat ccataggacc ttctgtcaca acattggtta gaaagttaga
3361 ttctacaata gaattttctt taatagcaca gaagcattgg tctttttcag gacatttgtc
3421 atatctgttt gtaacaaagc ggtcacaacc agggacataa taacagctat ccaaacactg
3481 agcagtttga gccatagaca taggcatctg tgacaaaatc agaaatccta tcaaagtttc
3541 tgtgactgct tttaggaaag agaggcctat ttttgtatta actatcaaat ggaaccattc
3601 aatgctagcc cagttgtatt ttttattctt ctctgctgtt ctagttatta taggacattc
3661 ttctgagtgt tcttcagagg ctttgttttt gttacaaatg cataattttg agcattcatg
3721 ggttaccaaa cataaatttc cacagacctt acatttcaag ggaaaataag accataaata
3781 atttatcagt agtagtatag gatacgttat caatcccaga agatcatacc catagaacag
3841 tgttttagat gttttgttta ccaagtacct tatagggaaa tagacaatca gagcaatcat
3901 gatcaatcta aaccatgaga agttgatgca agcagtttgt ttgtaaatat ttttggagta
3961 ctttataata caatctctaa ctcttttgtc cactaaagga actttagaag acttgtcacc
4021 gcacaatagg ttatgcttac catccatatt ttcttctgtg aaagtcaaac taactgagcc
4081 agagaagctt attatggaat ggctcatgtc acttccttct cttttgacga cgtaacccat
4141 gattttctca ggtgtagtta atgaaactgt ataagaatta actatgtttg tttttgatat
4201 tttacaatca cctgagaatt tcacactctg gagagagact gtgccattag ttggtctaga
4261 attgtacatg attggataat tgtaattctc caaactttca attatataga atttagttcc
4321 tatagataat ttccttttgt tatcgatttt tgttattggt acaactggaa cagtttcaaa
4381 gcttcttggc aattcagaag atccttcaca gtttcccaat ttagttatag tgtcactgat
4441 acatgaatat ataacaccat tgctttctac ttggtaataa acattgaatg ttgaaactcc
4501 cttaatgcta caagtcaaac ttgaagcatt taggcatgga tttggtaaat ccataattga
4561 tatagttgtt ggtgtagaag acaatccact tgaagattga ggtacctcat tattggcaag
4621 aacagtttga gtatctcgtg ttggtctaag ggttttacct gttgcattct ggagcatttc
4681 agccaaagta tctagaattt catttttatg atctacagaa cggtcataat aagcttcatc
4741 ataaatttct ggatggtcgc ccctttcaac atgaatcttt gcatctgtct cctttaatgc
4801 cataaaggat aagataacag aagtaacaac tagtgtgcat acactaattt tcgacaagta
4861 actcgcacat ctttagaatt ttcgattcta aaaagtcgaa taacactagt tctaaaattg
4921 ctttatgagt ttgatctgtt gtatgtagat ttttgtttgc actgattgct ct
//
