LOCUS NC_003623 3774 bp RNA linear VRL 13-AUG-2018
DEFINITION Grapevine Fanleaf virus (GFLV-F13) RNA2 encoding capsid protein.
ACCESSION NC_003623
VERSION NC_003623.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq; capsid protein; polyprotein; subgenome.
SOURCE Grapevine fanleaf virus (GFLV)
ORGANISM Grapevine fanleaf virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
foliumflabelli.
REFERENCE 1 (bases 1 to 3774)
AUTHORS Serghini,M.A., Fuchs,M., Pinck,M., Reinbolt,J., Walter,B. and
Pinck,L.
TITLE RNA2 of grapevine fanleaf virus: sequence analysis and coat protein
cistron location
JOURNAL J. Gen. Virol. 71 (PT 7), 1433-1441 (1990)
PUBMED 2374004
REFERENCE 2 (bases 1 to 3774)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3774)
AUTHORS Pinck,L.
TITLE Direct Submission
JOURNAL Submitted (13-OCT-1989) Pinck L., Institut de Biologie Moleculaire
des Plantes du CNRS (IBMP), 12 rue du G1 Zimmer 67084
Strasbourg-Cedex, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to X16907.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3774
/organism="Grapevine fanleaf virus"
/mol_type="genomic RNA"
/strain="F13"
/db_xref="taxon:12274"
gene 233..3562
/locus_tag="GFLVs2gp1"
/db_xref="GeneID:1494094"
CDS 233..3562
/locus_tag="GFLVs2gp1"
/note="polyprotein (AA 1-1109)"
/codon_start=1
/product="hypothetical protein"
/protein_id="NP_619706.1"
/db_xref="GOA:P18474"
/db_xref="InterPro:IPR005054"
/db_xref="InterPro:IPR005305"
/db_xref="InterPro:IPR005306"
/db_xref="InterPro:IPR021081"
/db_xref="UniProtKB/Swiss-Prot:P18474"
/db_xref="GeneID:1494094"
/translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINTDPSFRQTVK
EDVQENREQPTAVRMFSWKVGSGPIDNPEKCDWHFVLTGERPAPSRPVKADEVVVVPQ
PKKVVIPTPPPPPAPYFRAVGAFAPTRSEFVRAIVERLTRLREESRAAALFAELPLEY
PQGAPLKLSLAAKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQER
VREFCRMKSCTKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADPLQ
HRISTSVAPGRAQWISERRQALRRREQANSFEGLAAQTDMTFEQARNAYLGAADMIEQ
GLPLLPPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEY
RDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLA
RAIFFPGLQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTV
ASTVHQAQVQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWES
VEEPGQTFSIRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRY
LGTLNIRDMISDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRIT
SRITASADPVYTLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCL
TGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTA
VTALRSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWV
VSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFY
AIAGPIAPSGETAQLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGS
RFFDFTSNTCRVSMGENPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLV
GDKAMGLDGPSHVFAIQKLEGTTELLVGNFAGANPNTRFSLYSRWMAIKLDQAKSIKV
LRVLCKPRPGFSFYGRTSFPV"
misc_feature 494..1003
/locus_tag="GFLVs2gp1"
/note="Nepovirus subgroup A polyprotein; Region: NeA_P2;
pfam12312"
/db_xref="CDD:372036"
misc_feature 2051..2323
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 2543..3052
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, central domain; Region:
Nepo_coat; pfam03391"
/db_xref="CDD:397456"
misc_feature 3071..3547
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
CDS <2048..3562
/locus_tag="GFLVs2gp1"
/note="capsid protein (AA 606-1109)"
/codon_start=1
/product="hypothetical protein"
/protein_id="NP_619707.1"
/db_xref="GOA:P18474"
/db_xref="InterPro:IPR005054"
/db_xref="InterPro:IPR005305"
/db_xref="InterPro:IPR005306"
/db_xref="InterPro:IPR021081"
/db_xref="UniProtKB/Swiss-Prot:P18474"
/db_xref="GeneID:1494094"
/translation="GLAGRGVIYIPKDCQANRYLGTLNIRDMISDFKGVQYEKWITAG
LVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKLG
TFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAVVELYAELEEAT
SFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQVPMVGTTKVYNL
NSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNELFKYPGVYVEED
GSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETAQLPIVVQIDEIV
RPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGENPFAAMIAC
HGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSHVFAIQKLEGTTEL
LVGNFAGANPNTRFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFPV"
misc_feature 2051..2323
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 2543..3052
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, central domain; Region:
Nepo_coat; pfam03391"
/db_xref="CDD:397456"
misc_feature 3071..3547
/locus_tag="GFLVs2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
ORIGIN
1 atgaaaaatg tttacgtttt cttacgttac cgtgatttca cttttcttta gccaagagtt
61 taagaaactc aaaagtgaaa ctgccaagag tttaagaaac tcacaaagcg aagagtttaa
121 gaaactcatc attgcttttt tgttctttta ttttgcgctt tatttgttta gcattttatt
181 tagttctttt aaaaagcttt tgttttgttt ttctttttct ttacttgccc ttatgggcaa
241 attttattat tccaacaggc ggcttgcctg ttgggctgct gggaagaacc ctcatcttgg
301 gggttctgtt gaacaatggc tggcggccat taacactgat ccctccttcc gccaaactgt
361 taaggaggat gtccaagaaa accgagaaca gccaactgct gttcgaatgt tttcttggaa
421 agttgggtcc gggcccattg acaatcccga gaaatgcgac tggcattttg tccttacggg
481 cgagaggcca gcgccgtccc ggccggttaa agccgatgag gttgtggtgg tgccacaacc
541 gaagaaggtg gtgattccaa caccacctcc tcccccagct ccctacttta gggctgttgg
601 ggcttttgca ccaacccggt ccgagtttgt tcgggccatt gtggaaaggc tcacccggct
661 acgggaggag tcgagagctg cggcactctt tgccgaattg ccattggagt accctcaggg
721 tgctcctctg aagttgagcc tggcggcgaa attcgccatg ctcaaacata ccacttggag
781 gaagtggtat gacactagtg atgagcgcct tttggaggct catcctggtg gtccttgtct
841 tcctccccct cccccaatcc aaaatcctcc ctccttccag gagagggtga gggagttttg
901 caggatgaag tcctgcacca aggctttcgc cttggaaacc tccctaggtc tcaataaggc
961 ctgggtaggt ttagtggaca tccccagtac ttctgtgtgc tgtgcggatg ggaagactac
1021 cggtgggcag acaattgccc aggaagctga tcctttgcaa cataggatca gtacgtcagt
1081 agcccccggt agggcacaat ggatctccga gcgcagacaa gctctgcgga ggagagagca
1141 agcaaatagc ttcgaaggtc ttgctgctca aaccgatatg acttttgagc aggccaggaa
1201 tgcttatctt ggtgctgccg acatgattga gcaaggccta ccgctgcttc cccctctgcg
1261 cagcgcttac gcccctaggg gtttgtggag gggaccctca accagagcca attacacgct
1321 agattttagg ctcaatggta ttccgaccgg gacaaacaca ttggaaatat tgtataatcc
1381 tgtgtcggag gaagagatgg aagagtaccg ggacaggggc atgtcagctg tggtaattga
1441 tgcgctagaa atagccataa acccatttgg catgcctgga aatcctacgg acttgactgt
1501 cgtagcgaca tatgggcatg agcgcgacat gacgcgcgcc tttattggat ctgcttccac
1561 attcttaggg aatgggttag ctagagccat tttctttcct ggtttgcaat atagccagga
1621 ggaaccaagg cgcgaatcta taattcgcct atatgttgcc tctaccaatg ccactgtgga
1681 tactgattca gtcttggcag ccattagtgt tggcactttg cgtcaacatg ttggttccat
1741 gcactaccgg acagtggcta gtaccgtgca ccaggctcag gtgcaaggaa cgacgctcag
1801 ggctactatg atgggtaaca ctgtcgtagt atcacctgaa ggaagcctgg ttactggaac
1861 ccctgaagca agagttgaaa tagggggcgg ttctagtatt aggatggtgg gacctctaca
1921 gtgggaaagt gtggaggaac cagggcaaac cttctctatc agaagccgtt cacggtctgt
1981 gaggattgat agaaacgttg atcttcctca acttgaggct gagcccagac tgagctcaac
2041 cgtgagagga ttagctggta gaggagtaat ctacattccc aaggattgcc aggcaaatag
2101 atacttgggc accctgaata tacgtgatat gatctcagac ttcaagggtg tccagtatga
2161 aaagtggata actgcaggat tagtcatgcc tactttcaag atagttatta ggctacctgc
2221 aaatgccttt actggattga catgggtgat gagctttgat gcttataacc ggataactag
2281 tagaattact gctagtgcgg atcctgtata caccttgtca gtcccacatt ggcttatcca
2341 ccataagttg ggcacgtttt catgtgagat agactatgga gaattgtgtg gtcatgctat
2401 gtggtttaaa tcaaccacat ttgaatctcc aaggttgcat ttcacgtgtt taacgggcaa
2461 caacaaagag ttagcggcag actggcaagc tgtcgtagaa ctatatgccg aattggaaga
2521 ggccacttct ttccttggga aaccaacttt ggtttttgac ccaggtgttt tcaatggcaa
2581 atttcaattt cttacttgcc ctcccatatt ctttgattta acggccgtca cggcccttag
2641 gagtgctggg ctgacattgg ggcaagtccc aatggttggc accactaagg tttataatct
2701 aaacagcact cttgtgagtt gtgttttggg tatgggaggt actgttagag ggagggtgca
2761 catttgtgcg ccaatcttct acagtattgt tttatgggtc gttagtgagt ggaacgggac
2821 cactatggac tggaatgaac tttttaagta tcccggggtg tatgtggaag aggacggaag
2881 ttttgaagta aagattcgct ctccatatca ccgaactcct gccagattgc ttgctggtca
2941 aagtcagaga gacatgagct ctcttaattt ttatgcaata gcaggaccta tcgctccttc
3001 gggtgagact gcgcaacttc ctattgttgt gcagatagat gaaattgtgc gcccagatct
3061 ctctttacca agttttgaag atgactattt cgtatgggtg gatttttctg aattcactct
3121 tgataaagaa gaaattgaga ttggttctcg tttcttcgat ttcacttcga atacttgtag
3181 ggtatctatg ggtgaaaatc cgtttgctgc aatgattgcc tgccatggat tgcatagtgg
3241 tgtattagac ctcaaactcc aatggagtct gaacaccgaa ttcggcaaga gcagcgggag
3301 cgttaccatc acgaagctgg tgggtgataa ggccatgggt ctggacggac cttctcacgt
3361 ttttgccata caaaaactag agggaactac agagttgttg gttgggaatt ttgcaggagc
3421 aaacccaaac actcgttttt ccctttatag tcgctggatg gcaattaaat tggatcaagc
3481 aaagagtatt aaagtactcc gcgttttgtg caagccccgt ccaggcttta gcttttatgg
3541 tagaaccagt ttcccagtct agggtatctg actttaaaag acccaagtgt atatatgtgt
3601 tttgtcagta gcatgtatta ttttgtgtta taatttgttt taacttgttt tccgcttttg
3661 tgtgtttagt ttcatgcttt tagtggcgac agtgtgttgt ttgtcctttg gacacacttg
3721 cctagttgga cgcaaaaaga tttttccttt ctttttactg ttttgcaaat ttat
//
