LOCUS NC_003625 8776 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Impatiens necrotic spot virus segment L, complete sequence.
ACCESSION NC_003625
VERSION NC_003625.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq; L gene; L protein.
SOURCE Impatiens necrotic spot virus
ORGANISM Impatiens necrotic spot virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Tospoviridae;
Orthotospovirus; Orthotospovirus impatiensnecromaculae.
REFERENCE 1 (bases 1 to 8776)
AUTHORS van Poelwijk,F., Prins,M. and Goldbach,R.
TITLE Completion of the impatiens necrotic spot virus genome sequence and
genetic comparison of the L proteins within the family Bunyaviridae
JOURNAL J. Gen. Virol. 78 (Pt 3), 543-546 (1997)
PUBMED 9049402
REFERENCE 2 (bases 1 to 8776)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 8776)
AUTHORS Van Poelwijk,F.A.J.
TITLE Direct Submission
JOURNAL Submitted (20-NOV-1995) F.A.J. Van Poelwijk, Agricultural
University of Wageningen, Binnenhaven 11, NL- 6709 PD Wageningen,
UK
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from X93218.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..8776
/organism="Impatiens necrotic spot virus"
/mol_type="genomic RNA"
/strain="NL-07"
/db_xref="taxon:11612"
/segment="L"
gene complement(34..8637)
/gene="L"
/locus_tag="INSVsLgp1"
/db_xref="GeneID:956576"
mRNA complement(34..8637)
/gene="L"
/locus_tag="INSVsLgp1"
/product="L protein"
/db_xref="GeneID:956576"
gene complement(148..8745)
/locus_tag="INSVsLgp2"
/db_xref="GeneID:1724686"
CDS complement(148..8745)
/locus_tag="INSVsLgp2"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="NP_619710.1"
/db_xref="GeneID:1724686"
/translation="MNNYKARLLIENSVTLLSSIDDCIKSNLELSRDLHKKNPDEISE
DIIINNNAKNYEALRTLIARITRDGEGIETGLATVDMKKISEDMTLLEQKYLETELAR
HDMFGELVSRHLHLKPKKRHDVEIEHAVREYFEELSKKECSNRLSEEDFKKVSKEYVA
TNATPDNFVIYKESKSGPLCMMIYDWKISVDAKTETKTTEKYYKNIWKSLKDVKVKGK
SFLEEHPIFISIVILKPIGSMPIVVTTSRVLEKFEDSESALHANRLRHASQSKLVGVS
NIGRIIGTTPTVVREFYADTQKLKIEFRSILGEEFGSKDIFFSHWTNKYKDRDPTQIA
HSEDLEKIIESMVTDDISREEIVHFMFGNFCLHIETMNDQHIADRFNGYRSSCVNLNV
EPKKDISELKDHLLSTKGLWESLYDHHLIKVMDRIKTKKQKEKIIPDIMTAFNLNAEE
YEKKYPNCFTSDLSETKTNFSVTWSPCTDMVELGNQDYNNAVIDRFRKAFLSNPRIRY
NSAYSKEMNVTSKAKDVTELVRSCLTTLSCDTSGMDPQQLEDEIDISTGGIKVERTSK
SQEWIKKNDCLTRNRNEFNMRETSKDNKVIYFKGLSVMNVSMSKKKRIIKHEELKGKI
TKGLEYDTSERQYDPNDDYVSLDLSSFTHAKKLIRHDNEESLEWCSQIQDGLFVLHNS
DIRENCKVATVYNNYTKNPENLFTQSTIIKTEMETCKKINKLCNDLAIYNYAEDMMQI
SKGLMVADRYMTKESFKILTTFNTSMLVLAFKGDGLNTGGSGVPYILVHMVEETLSEQ
FSVCYTKEIYSHFSFGSHVVYIMRPQRLNQVRLLSLFKSPSKVPVCFAQFSKKAHELE
GWLKIKDMQEVQTLSMSSNVRRIMRNIVFSSVMIGTVTKLSRMGIFDFMRYAGFLPLS
DYSNIKEYIQDKFDPDITNVADMFFVEGIKKLLLKMENLNLSTSAKPVVIDHENDVIG
GITNLNIKCPITGATLKTLEDLYNNVYLAIYMMPKSLHNHFHNLTSLLNVPAEWELKF
RKEMGFTLFEDIYPKQKMFQDNELFSINGVLNLKSLSDYYASTVENVGLMRTEIENKE
DFLSPCYKISTLKSSKKCSQSNIICSDDIINCLQEANVRSLEDLSPKNLAILKGLLRT
LHEDKNRLYEFFEDHSENPYYLMEKMKTIKSSEKITTGKSKTSKFIRNNHPLTVETYL
KTKLYFRNNITVLKSKKVSEELYDLIKQYHNIMDIDMESIMNLGKGLEGKKHTFLQML
EFVMSKAKNASDAIDFLVSVFEKMQRTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSD
PSEAISISGDNKIRALSMLSMDTITSYNDILKNSKNKSKLAFLSADQSKWSASDLTYK
YILAIIMNPILTSGECTLMVDCLMMYVKLKKVCIPTDIFLGLRNSQEKFGTNETAIGL
LTKGLSTNSYPVSMNWLQGNLNYLSSVYHSCAMKAYHRMLESYKKCEFQTRWIVHSDD
NATSLIADGDIDKMLTDFSSKSLSEMVFRSIESHFKSFCITLNPKKSYASSSEVEFIS
ERIVNGAIIPLYCRHLANCCTESSHISYFDDLMSLSINVTMLLRKGCPNEVIPFSYGA
VQTQALSIYSMLPGEINDTMRICKKAGVNLEHNEIPTNLGGWLTANVESLSLLGPSSN
DQTIYYNIIRDFLKKDDFEQVKQSTSSERFLDLRFEELKQKKERDKLELNDKKMIFLM
NLFEQSSVSEDSDVLNIGMKFQTMMTQIIRLPQFINENALSKMSSYNDFCKLYPHLRK
NQQLHNSTKEIKSDEDMLIEDLDDYEKIAPANEMEEVHEIMIKNPETILIAPLNDRDF
LLSQLFLYTSPAKRNQLSSQSTEKLALDRILRSKARTFINPDSDTKMTYDENLEKKIS
TMKPLNEDSVSVFKTCINLVLKDVNFAMAIPIIDNIYPCEARRRDNYNFRWFQTEKWI
PVVEGSPGLVVMYSIYGSDYIEKLGLKNIPLTDNSINVLTGTFGSSLMLEDVKYYVKG
LEVFETEEFQNSNRCQRAVKACNYMITAQNRLLAINTCFSRKNFPFYSKFNLGRGFVS
NTLALMSSIYSKEESFHFMSNVHFKIDKSIRAIISAQQDLNLERILDTAVYISDKMQA
IFPDITRFDIMTILKNVCIDSVSIWDTLDSKMDKINHAMERKMTTSNILLSHNSELNT
IQKQIIWLYNMGLCSKKTLNFVIRYIRRSDVRYVRTEEQDSFGNYVSGTVYKIGTMNQ
NNYVQLMASETDIAISLRTPYDIRDERDVLYSAHKDSIEKLLSKFLFDKGNVIRSKQS
QTVFLNPGQACLRTTTDGKLIAKVNPTPKLLKVDNVKLIMDINYENVNSDVWSIIESQ
KQIDLRLPETGECYSEMYKTIDSEQGLIYEMKSNLIKSLTFINTFADLNESVYSIDDE
VTRETIFDFIDSIRNDCLEGLETSKSVEEYEEFLDTHGFRETVSLFKNMIESLESLDA
EYSPIFLNITDKYQKFSEDLGNFKSMLLMLKYSLVNDASGFKSYRATGAHAIGLTMKK
HIEIGEFNLLGLIQLIKACESCHNSDSILNLVSLRNVLSKTYTISSRKIQLYYNINLQ
NDLMERSYDFKTLVLPDINLSDYSKEILKENGFVVSGENIKIDREIGDEDFVGLASFD
VMRLDEEQMFDEIVKDMKIKRKKKGYLFPSNTLILSEMIKFLINGNKRTSFDVESLLR
NSFNVTIFAGSRLGKVSTSVPSLKIYSTVFMEYEKRDCPLNEISECLEGFLKITKSEI
SEPILEGKLKKVLIQLRNEKNKSKKLEVFRAIYGFLSNNPLCLTDKTLYGRMTFEDIN
RYIMETREIIINKIKELDDGDSSDSIEILLKYLNEAN"
misc_feature complement(3739..6270)
/locus_tag="INSVsLgp2"
/note="Bunyavirus RNA dependent RNA polymerase; Region:
Bunya_RdRp; pfam04196"
/db_xref="CDD:282102"
ORIGIN
1 agagcaatca ggcacaacta aaatcttaat ctaaccatac taaatatata aaactaatat
61 taagatcaaa attatggcac tatttgctct ttcagttgta tggctactta tgctagatgc
121 tcatgtaaaa atatttttgg ttcttgttta gtttgcttca ttcaaatatt tcaaaagtat
181 ttctatgctg tctgaagaat caccatcatc aagttctttg attttattta taattatttc
241 tctagtttcc atgatgtatc tgttgatatc ttcaaatgtc attctaccgt ataatgtttt
301 gtctgtcaag cataaagggt tatttgataa aaacccatat attgctctaa agacttccaa
361 tttcttgctc ttgttttttt catttcttaa ttgaatcaaa accttcttta attttccctc
421 aagtataggt tcagaaattt ctgatttggt tatttttaaa aatccttcta ggcactctga
481 tatctcattc aaagggcaat ctcttttctc atattccatg aaaactgttg aatagatctt
541 caaagaagga acactagtgc ttactttccc taatctgctc ccggcaaaaa tagtcacatt
601 gaaactgttt ctaagcagac tctctacatc aaaactagtc cttttattcc catttatcaa
661 gaattttatc atttcgctaa gtatgagagt gttagaagga aacaaatatc ctttcttttt
721 tctttttatt ttcatatctt ttactatctc atcaaacatt tgctcttcat ccaatctcat
781 gacatcaaaa ctagctagac caacaaaatc ttcatcacca atctctctat ctatttttat
841 gttctcacca gaaacaacaa aaccattttc tttcagtatt tcctttgaat aatcagacag
901 attaatatct ggtaaaacca atgtcttgaa atcataactc ctctccatca aatcattctg
961 taagtttata ttataatata gttggatttt cctactagaa atggtatatg ttttgcttag
1021 aacatttctc aagctcacta gattcaatat agaatcacta ttatggcaag actcgcaagc
1081 tttgatcaac tgtatcaagc ctaataagtt gaattctcct atctcaatat gttttttcat
1141 tgttaaacca attgcatgtg caccagtagc tctgtaactt ttgaagccag aagcatcatt
1201 cactagagaa tacttcaaca tcaacaacat tgacttgaaa tttcctaaat cctcagagaa
1261 tttttgatat ttgtcagtta tattcaagaa tatagggcta tattcagcat ccaatgactc
1321 taaactctct atcatgtttt taaaaaggct aacagtttcc ctaaacccgt gggtgtccaa
1381 aaattcttca tactcttcaa cacttttgga agtttctaaa ccttctagac aatcattcct
1441 tatactatct atgaaatcaa aaatggtttc tcttgtgact tcatcatcta tagaataaac
1501 agattcattc agatctgcaa atgtgtttat aaaagtcaat gacttaatca aattagattt
1561 catttcataa atcaaaccct gctccgaatc aattgtttta tacatttcag agtaacattc
1621 acctgtttct ggaagtctta aatcaatttg tttttgactc tctattatag accaaacatc
1681 agagttcaca ttttcataat tgatgtccat tattagtttt acattgtcaa ctttcagcaa
1741 tttaggagtc ggatttactt ttgcaataag cttaccatca gttgttgttc ttagacaagc
1801 ttggcctggg tttaggaaaa ctgtttggct ctgtttggat cgtatcacat tacctttgtc
1861 aaacaaaaat tttgatagaa gtttctcaat gctatcttta tgggcactgt atagcacatc
1921 cctttcatct cttatatcat atggtgttct caaagaaatt gcaatatctg tttcagaagc
1981 catcagttgt acataattat tttgattcat ggtgccaatc ttataaactg tccccgaaac
2041 atagtttcca aaactgtctt gttcttctgt cctaacatat ctgacatcac tccttcttat
2101 atatcttata acaaagttca gtgtcttttt agaacataga cccatattat acaaccaaat
2161 tatttgtttc tgaattgtgt ttaattcact gttatgagac aggagaatgt tagatgtagt
2221 cattttcctt tccatagcat gatttatttt atccattttt gaatctaatg tatcccaaat
2281 ggaaacactg tcaatgcaaa catttttcaa aatagtcatg atgtcaaatc tagttatgtc
2341 tgggaaaata gcttgcatct tatcagaaat gtacacagca gtgtccaaaa ttctctccaa
2401 atttagatct tgttgtgcac ttattatagc tcttatggat ttgtctattt taaaatgcac
2461 atttgacata aaatgaaatg attcttcttt actgtaaatg cttgacatta atgccaatgt
2521 gtttgataca aagcctctgc ctaaattgaa tttagaatag aaagggaaat tttttcttga
2581 aaaacacgtg ttaatagcaa gcaacctatt ttgggctgtt atcatgtaat tgcaagcttt
2641 cactgctctc tggcatctat tagaattttg gaattcttca gtctcgaata cttcaagacc
2701 tttgacataa tattttacat cctccaacat caagctggat ccaaatgtgc ctgttaaaac
2761 attaatacta ttatctgtca agggtatatt tttcagccct aatttttcta tatagtcaga
2821 accatatatt gagtacatca caactaatcc tggtgaacct tctacaactg gtatccattt
2881 ttctgtttga aaccagcgga aattgtagtt atctcttctc ctggcttcac atggataaat
2941 gttatcaata attggtatag ccatagcaaa attcacatcc ttcagcacca aatttatgca
3001 tgttttgaaa acactcacag agtcctcatt caatggtttc attgtactaa ttttcttttc
3061 taagttttca tcataagtca tttttgtatc agaatctggg tttatgaagg ttctagcttt
3121 tgatcttaaa atcctgtcta atgccaattt ctcagtagat tgacttgaca attgattcct
3181 ctttgcaggg cttgtgtaca gaaataattg gcttaacaaa aaatctctgt catttaatgg
3241 tgctattaaa atagtttcag ggttctttat cattatttca tgcacctcct ccatctcatt
3301 tgcgggagct attttctcat aatcatctaa atcttcaatc agcatgtctt cgtcagactt
3361 gatttcctta gtgctattat gaagttgttg attctttctt agatgagggt ataatttgca
3421 aaaatcatta taactggaca tttttgacaa agcattttca tttataaact gaggcaacct
3481 aattatttga gtcatcattg tctgaaattt catccctata tttaaaacat cagaatcttc
3541 agatacagaa gactgctcaa atagattcat taaaaagatc atctttttat cattaagctc
3601 taatttatct ctttcttttt tttgtttaag ttcttcaaat cttaaatcaa ggaacctttc
3661 agaggatgtg ctttgtttta cttgctcaaa atcatctttc tttaagaaat ctctgattat
3721 attgtaatag atggtctgat cattagatga tggacctaat agtgacaatg attccacatt
3781 tgcagttaac catccaccta gatttgtggg tatttcatta tgttccagat tcacacctgc
3841 tttcttgcat atcctcatgg tatcattaat ttcacctggt aacatagagt aaatggataa
3901 agcttgtgtt tgaacagctc cataagaaaa tggaatgact tcatttgggc atcctttcct
3961 taaaagcatt gttacgttta tacttagtga cattaagtca tcaaaataac ttatatgtga
4021 cgattcagtg cagcaattgg ctaaatgtct gcaatatagg ggtataatag ctccatttac
4081 tattctttcg gagataaatt caacttctga agaggaagca tagctttttt taggattcag
4141 agttatgcaa aaactcttaa aatgtgattc aatgcttcta aaaaccattt cagaaagact
4201 tttgctgctg aaatctgtta acattttgtc aatgtcacca tcagcaatta aagatgttgc
4261 attgtcatcg gaatggacaa tccatcttgt ttggaactca cactttttgt aactttcaag
4321 cattctatga taagctttca tagcgcaaga atgataaaca gaagataaat aattaagatt
4381 tccttgtaac caattcatgc ttactggata agaattagta gaaagacctt tggtgagcaa
4441 cccaatggct gtttcattag tcccaaattt ctcttgtgaa ttccttaaac ctaagaaaat
4501 gtctgttgga atgcacacct ttttcaattt cacatacatc atcagacaat caaccattaa
4561 tgtgcactca cctgatgtca atataggatt cattataatg gccaatatat acttgtatgt
4621 taggtcagaa gctgaccact tagattgatc agctgataaa aatgctaact tagatttgtt
4681 cttgctgttt ttcaatatat cattgtatga tgttattgtg tccatcgaca acatagataa
4741 tgctcttatt ttattgtcac cactaatgga tatggcctct gaagggtcac tttgagcaac
4801 atgcttgaaa gtatgttcta tgaaataaag catcattttt actttcatac tcatgaggta
4861 aatttctcta tctgttttag ttctttgcat cttttcaaat acagaaacta aaaaatctat
4921 tgcatcagaa gcatttttag ctttagacat gacgaattct aacatttgca ggaaagtgtg
4981 tttttttcct tctagacctt tccctaaatt cattatagat tccatgtcta tgtccatgat
5041 attatggtat tgtttgatta agtcatacag ttcttcagac actttttttg atttaagaac
5101 agttatatta ttcctgaaat ataattttgt cttcaagtat gtttccactg ttaaaggatg
5161 gttattccga atgaacttag atgtttttga tttacctgtt gttatttttt cagaagattt
5221 gattgtcttc attttttcca taaggtaata agggttttca gagtggtctt caaaaaattc
5281 atacaacctg tttttatctt catgaagagt tctaagcaaa cctttcaaga ttgccaaatt
5341 ttttggactc aaatcttcca gtgatctaac atttgcttct tgaagacagt taattatatc
5401 atctgaacaa attatattag attgagaaca cttttttgaa gatttcaaag tggaaatctt
5461 gtaacaagga ctcaagaagt cttctttgtt ttcaatttca gttctcatca gcccaacatt
5521 ttcaacagtc gatgcatagt aatcagaaag agattttaag ttcaagacac cgtttataga
5581 aaataactcg ttgtcttgga acatcttttg ttttggatag atatcttcaa ataaagtaaa
5641 ccccatttct tttctgaact ttaactccca ttctgcaggt acatttagta gacttgtcaa
5701 attatggaaa tgattgtgga gtgatttagg catcatatat attgccaaat aaacattgtt
5761 gtataaatct tctaatgtct taagagtagc acctgtgatt gggcatttta tgttcaaatt
5821 tgtgattccc cctatcacat cattctcatg atcaataacc acaggttttg cacttgtact
5881 taaatttaag ttctccattt tgagaagaag cttttttatt ccttcaacaa agaacatgtc
5941 agcaacattt gttatgtctg gatcaaattt atcttgtatg tattctttta tatttgaata
6001 gtctgataaa ggtaggaatc ctgcatatct catgaagtca aagattccca tcctgctaag
6061 ctttgtgact gttcctatca tgacagaaga aaagacaata tttctcatta ttcttcttac
6121 attagagctc atgcttagtg tttgcacttc ttgcatatct tttattttca accacccttc
6181 taattcatga gcttttttgg aaaactgagc aaaacaaact ggaactttgc tgggagattt
6241 gaaaaggcta agaagtctaa cttggttcag cctttgcggc ctcataatat atacaacatg
6301 actaccaaat gagaaatgac tatatatttc ttttgtgtaa cacacactaa actgctcaga
6361 tagagtctct tccaccatgt ggactagtat gtaagggact cctgaccctc ctgtgtttag
6421 cccatctcct ttaaaagcca aaactagcat gctagtattg aatgttgtca atatcttgaa
6481 actttcttta gtcatgtacc tgtcagcaac catcaaacct ttagatattt gcatcatgtc
6541 ctcagcataa ttatatatag ccagatcatt gcataatttg tttatctttt tacaagtttc
6601 catttctgtt tttatgatag ttgattgagt gaaaagattt tcaggatttt ttgtataatt
6661 gttgtaaaca gtagccactt tgcaattttc tctgatgtcc gagttatgga gaacaaataa
6721 tccatcttgg atctgtgagc accattctaa gctctcttca ttatcatgtc tgataagctt
6781 ctttgcgtgg gtgaatgaag ataaatccaa acttacataa tcatcattag ggtcatactg
6841 tctctctgat gtatcatatt ctagaccttt tgtgattttc ccttttagtt cctcatgctt
6901 tattatcctt ttctttttac tcatgctcac gttcataaca ctcaaacctt tgaaatagat
6961 cactttatta tctttactgg tttccctcat gttaaactca tttctatttc tagtcaaaca
7021 atcatttttc ttaatccatt cttgtgattt gctagttctt tccactttta taccacctgt
7081 gcttatgtca atttcgtctt ctaattgttg ggggtccatt ccacttgtat cacagcttag
7141 agttgttaga caggacctga caagttcagt cacatccttt gctttgctgg tcacattcat
7201 ctctttgcta taagctgaat tatatctgat cctaggattg ctaaggaaag ctttcctgaa
7261 ccgatcaata actgcattgt tataatcttg gtttcctagt tccaccatat cagtgcaagg
7321 tgaccaagtg acagaaaaat ttgtctttgt ttcagagaga tcacttgtga aacaatttgg
7381 gtatttcttt tcgtactctt cagcattcaa gttgaatgca gtcattatgt caggtataat
7441 cttttctttt tgttttttcg tttttatcct atccataacc ttaatcaagt gatgatcata
7501 taaagattcc cacaaaccct tagtagataa cagatgatcc tttaattctg aaatgtcttt
7561 cttaggttct acattcagat tcacacaaga ggatctatac ccattaaatc tatcagcaat
7621 atgttgatca ttcattgtct ctatatgcaa gcaaaaattc ccaaacataa aatggacaat
7681 ttcttcccta cttatgtcat ctgttaccat tgattcaatt atcttctcca aatcctctga
7741 atgagcaatc tgtgttggat ctctgtcttt atatttattt gtccaatgac taaaaaatat
7801 gtctttagag ccgaactctt cacccagtat gctcctaaat tcaattttta acttttgggt
7861 gtctgcataa aattctctaa caacagtagg agttgtgcca attatccggc ctatgttaga
7921 caccccgaca agctttgatt ggcttgcgtg tctcaacctg ttggcatgca atgcagattc
7981 tgaatcttca aatttctcta agactctgct agtcgtgacc actataggca tagatccaat
8041 aggtttaaga ataacaatag agatgaatat gggatgttct tccaagaaag atttaccctt
8101 gactttcaca tctttcaatg atttccatat gtttttgtaa tatttctctg ttgttttagt
8161 ttctgtttta gcatcaacag aaattttcca atcatagatc atcatgcaaa gaggaccact
8221 cttggattct ttgtatatca caaagttatc aggagtagcg ttggtagcaa catattcttt
8281 actgaccttt ttgaaatctt cttcagacag tctgttagaa cattctttct tgcttagctc
8341 ttcaaaatac tctctgacag catgctctat ctccacatca tgtctttttt taggttttaa
8401 atgcaaatgt cttgaaacca gctcaccgaa catatcatgt ctagctaatt cagtttcaag
8461 atatttctgc tcaaggagag tcatgtcttc agatatcttt ttcatgtcaa ctgtagccaa
8521 tcctgtttca atcccttcac catccctagt aattcttgct attagagttc ttaaagcttc
8581 atagttttta gcattgttat ttataataat atcttcactt atttcatctg ggttcttttt
8641 atggaggtct ctgcttaact ctaaattgct tttgatacaa tcatcaattg acgatagtag
8701 agtaacagaa ttttctatta ataatcttgc tttgtaattg ttcattctga ataaattgtt
8761 gttgcctgat tgctct
//
