LOCUS NC_003739 5449 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Raspberry bushy dwarf virus RNA 1, complete sequence.
ACCESSION NC_003739
VERSION NC_003739.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Raspberry bushy dwarf virus
ORGANISM Raspberry bushy dwarf virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Martellivirales; Mayoviridae; Idaeovirus; Idaeovirus rubi.
REFERENCE 1 (bases 1 to 5449)
AUTHORS Ziegler,A., Natsuaki,T., Mayo,M.A., Jolly,C.A. and Murant,A.F.
TITLE The nucleotide sequence of RNA-1 of raspberry bushy dwarf virus
JOURNAL J. Gen. Virol. 73 (PT 12), 3213-3218 (1992)
PUBMED 1469359
REFERENCE 2 (bases 1 to 5449)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from S51557.
Region: RNA-1 segment.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5449
/organism="Raspberry bushy dwarf virus"
/mol_type="genomic RNA"
/db_xref="taxon:12451"
/segment="RNA 1"
gene 104..5188
/locus_tag="RBDVs1gp1"
/db_xref="GeneID:963857"
CDS 104..5188
/locus_tag="RBDVs1gp1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="NP_620465.1"
/db_xref="GeneID:963857"
/translation="MECLDFSKLWFSTAAGLQQRCYYDCVAWECLGDDDLQIFISGLN
RLIESVAVSCTGDEDLDFVVDSCNEFVTGRDLKSFFAADLPVREVSSVGCISHFIPGS
VSGLNVSDLLDNQLYGCSVFSSDFESKLRDIRDAALSDAASGVSQLVSCHFEKDVRHL
LAENANSVKIPVPQKLSDDDMRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLL
SNFPADAPILDIGGNWFSHFRYGRSNVHSCCPMLDLRDNERHTHRLTMTESLMSSLRH
RYAGTIDLDPDAHLSRKVSDSMKEFYKRWAVHPKDLIRLYAGIRDGNSSLYCHHKFGV
SWNDVLWESERNNCLTVPEPECPFKAKYAIMVHSGYDLPLKELIGGMVQHGVVELHGT
MIADPAMLVATSGYIPALRCNWEKSKGQIWFSFRDDSTMGYRHDWEVYSKYLTSTVVS
CGKHFYVMERDKYRHGVLFYSIIKCSGSLRKGDHTFFHNAWFHEMYDKYIMKVPLVKV
KDLTGDEGSVECSWREVVMSRKLVDRVIEVCLRGVKPINFGNCDDAVHMDNLRIIQNH
LLSHSQTLVLNGSTIIREEAIPFKDFSPVSVTIYFEILLTRYKESLSLAWFHAGLGPD
FKLGSWVSSLKRVFYRILGFPANLLKYVLNALFRCRDKVSDMEFVKPAVEKLTVLENT
YIGKSLMGDCPTLKEYDDSAFFNILENVGNELFNNSSTDSGKPETPEVTMTGNPNAVI
AEAISYCRAEVDRIGKKCERILHAYQATGNCGGYLNDTDNVGVFDKMTSWVQKPKEFD
HEFGWDGSSFIKLSWFGKIPDFVGRYLVVTDGTRVTTNLKFSRQYATIPATVTPTIKL
VDGVTGCGKTTEIVRRYRPGILILSVCKANVDEIRRKLAAVDSKFIRTVDSYLLSPSV
TGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPLKYNSVE
DVGLNFDREIRSTTYRCPQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSEFEIPLP
NAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVVYFRLTRTDND
LYTKRKLPYHLVAISRHTDKIVYCTTKPEDSSDFSLSALKNTIKTSRDLTQEASGSES
SYAVVFESNSEVTATKPEVCENVRKAAEMNFPVSSDALYQKEVPIYGAIPDPKGKASY
NPGSVIRAIEELTPGNTSIDTDALDELVEVGPMSLQVGSIRWDVSKISPRLFTNNKFA
VPHLPTGALLRRNTSSRQVGLAIEKRNANVMNSQKYFDLENLANKAVERFFDFFIDME
KFSKLPTGVLGSSAEQIQTYQNKTGNKVTDPVCVALSPIQKYKHMIKRDVKFNLTDGA
QSEYTKAATITYHQPEITQVATAIFGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYH
LGSENNTFTEIDFSKFDKSQGEIHQLIQDLILIKFGCDPEFVALWSTAHRSSSIFDQN
VGIGFKTDFQRRTGDAFTFLGNSLVTAAMLAFVISDPDREKIRYMLVGGDDSLICSYG
PIQVPLEPLGDIFNMSCKLVQPACPYFASRYLIRRGDEILCVPDPYKLLVKLGRKDVP
DNQASLCEIRTGLADSAKYIFDDIVKQKLAILVQVRYNKAAPSLYDALCTVHWALSSN
TNFSKFYTVTNTSNEVRRNRRGVKIT"
misc_feature 617..1852
/locus_tag="RBDVs1gp1"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature 2666..3442
/locus_tag="RBDVs1gp1"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
misc_feature 3806..5125
/locus_tag="RBDVs1gp1"
/note="RNA dependent RNA polymerase; Region: RdRP_2;
pfam00978"
/db_xref="CDD:395779"
ORIGIN
1 atatttggtg tctggctgtt taagcgataa gaatctgctg gtctgacatc tatctcttgg
61 gtatccttat tgactacggg gattgtttac ttgagatatt cttatggagt gcttagattt
121 ctccaagctg tggttttcta cggccgctgg tctccagcaa cggtgctatt atgactgtgt
181 tgcgtgggaa tgcctaggtg atgatgatct acagatcttc atttctggcc tgaaccgcct
241 catagagtcc gttgctgttt cttgtaccgg cgacgaagat ttggacttcg tcgtggactc
301 atgtaatgag ttcgttacgg ggagagactt gaagtctttc ttcgctgctg acctccctgt
361 tagagaggtc agttctgtgg gatgtatatc tcactttatt ccaggttcgg tttctggact
421 gaatgtctcg gacttgctgg ataaccagtt gtatggttgt tctgtatttt cctccgattt
481 cgaatcgaag ctgagggata tacgggatgc ggccctttct gatgccgcgt cgggtgtttc
541 gcaactagtt agttgccatt ttgaaaaaga tgttagacac ctcttggcgg agaatgctaa
601 ttccgtcaag atccctgtac ctcagaaact cagtgatgac gatatgagga ttttaaggga
661 tcactttcct cgttatgagt tgaagttcac tcagaacgtg gacggcccgc acaatatggc
721 cgccgctcat aggttgttgg agactcatga tttgttgtcc aacttccccg cggatgcacc
781 tatcttagat ataggtggca attggttttc tcatttccgt tatgggaggt ccaatgttca
841 tagttgttgc cctatgctag atttaaggga caatgaacga catactcatc gtttaacgat
901 gactgagagt ctaatgtcca gcttgcgcca tcgctatgct ggtacaattg atctcgatcc
961 cgacgctcac ctttcaagga aggtgtctga ctctatgaaa gagttttata agcgctgggc
1021 tgtacaccct aaagatttaa ttaggttgta cgccggcata cgtgacggca actcatcgct
1081 ctattgtcac cataaatttg gtgtgtcatg gaacgatgtt ttatgggagt cggagaggaa
1141 taactgcctc actgtcccgg agcctgagtg cccttttaaa gctaagtatg ctataatggt
1201 gcattccggt tatgacctac ctctaaagga acttattgga ggcatggtac aacatggcgt
1261 ggtcgagttg catgggacta tgattgctga tcctgctatg ttagtcgcta caagtggcta
1321 tatccctgca ctgcgttgta actgggaaaa atccaaaggt caaatttggt tttctttccg
1381 agatgacagc acgatgggtt acaggcatga ctgggaggtg tactctaagt atttgacttc
1441 cacagtcgtc tcttgcggta agcactttta cgtgatggaa agagacaagt acagacacgg
1501 tgtgttattt tatagcataa ttaagtgttc tggatccctt cgtaaagggg atcacacttt
1561 ttttcataat gcctggtttc acgaaatgta cgataagtac attatgaaag tccccttggt
1621 aaaggtaaag gacttaaccg gtgatgaagg ttccgtcgag tgttcttggc gtgaagttgt
1681 gatgtctagg aaacttgtgg atagggtcat tgaggtttgc cttaggggtg taaaacccat
1741 taactttgga aactgcgacg acgctgttca catggacaat ctccggatca tccagaacca
1801 tctgctgagt cattcgcaaa cactggtttt aaatggtagt accattatta gggaggaggc
1861 gatacctttt aaggatttct ctcctgtatc cgtgaccata tattttgaaa tattgttgac
1921 gagatacaag gaatccctat ctttggcctg gtttcatgct ggtctgggtc ccgactttaa
1981 gttgggctct tgggtatcct ctttaaagag ggtgttctac cggattctag gtttcccggc
2041 taatcttcta aagtacgttt taaacgcact ttttagatgc cgtgacaagg tttcagacat
2101 ggagtttgtg aaacccgctg tcgaaaaatt gacagtgtta gagaatacct atatagggaa
2161 atctctaatg ggcgattgtc ctactctaaa agagtatgat gattcggcct tcttcaatat
2221 attggagaat gtgggcaatg agttgtttaa caactctagt accgattccg gaaaaccgga
2281 aacacccgaa gtgaccatga ccggtaatcc caatgcagta atagctgagg ctatcagcta
2341 ctgtcgagct gaggtcgata gaattgggaa gaagtgtgag agaattctcc atgcttacca
2401 ggccactggg aattgcggcg ggtacctaaa cgatactgac aatgtaggtg tgttcgataa
2461 gatgacgtcc tgggtacaaa aacccaagga gttcgatcac gaatttggat gggatggctc
2521 ctcctttatt aaattgtctt ggtttgggaa aataccggac tttgtaggaa ggtatttagt
2581 agtgactgac gggacacgtg taacgacaaa tttgaaattt tctcgtcagt atgctactat
2641 tccagcaacc gtaacaccca ccattaaatt ggttgatggt gttactggat gcgggaaaac
2701 gactgagatc gttaggcgtt atcgtcctgg gattttaatc ctaagtgtat gtaaggctaa
2761 cgtggatgag attagaagaa aattagcggc cgtggactcg aagttcatta gaaccgttga
2821 ttcttatctt ctcagcccga gtgtgaccgg aagctgtgat gaactcttca tagatgagta
2881 tggtctctcg catccgggca ttctgttact ggctatccat attagcggaa tccgaaaggt
2941 cactctcttt ggtgactctg aacagattcc tttttgcaat cgccttgctg attttcctct
3001 aaaatacaac tccgttgaag acgtgggatt gaactttgac agggaaatca ggtccactac
3061 ttatagatgc cctcaggaca tcactttgtc tttacagaaa atgtataaga caaaaccgat
3121 aaaaacggta tcgactgttg aaagttcgat aaccatcaaa ccaataaaga gcgaatttga
3181 aattcctcta cccaatgcgt ttgatggtcc tgtgttgtac atatgcatga ctaagcatga
3241 tgaaagcctt ttaaagttgc gttgggccaa agagaacatt tctagcgaag ttcgaacggt
3301 gcacgcagct caaggtttga gttataagaa cgtcgtgtat ttcaggttaa ctcgtactga
3361 taacgatttg tataccaaga gaaaactacc atatcatttg gtggcaattt ctaggcatac
3421 tgataaaatc gtttactgta ctacgaaacc tgaagactca tctgattttt ctctatctgc
3481 tctaaaaaat accatcaaaa cctctcggga tttaacccag gaggctagtg gttcagagag
3541 ctcttatgct gttgtcttcg aatcaaattc ggaggtaacc gcaaccaaac ctgaggtttg
3601 tgaaaatgtt agaaaagcag ctgagatgaa ttttcccgtt tcctctgacg ctttatatca
3661 gaaggaagtg cccatttatg gtgcaatacc cgacccgaag ggaaaagcaa gttacaatcc
3721 gggtagtgtt atcagggcca tagaagaatt gaccccaggt aacaccagca tagatactga
3781 tgctttggac gaactagttg aagttggtcc tatgagttta caagttggta gtataagatg
3841 ggatgtctct aagatatcac ctcgcttgtt tactaacaac aaattcgcag ttccgcacct
3901 accgactgga gccttgttaa ggcgtaacac gagcagtcgt caggttggat tggctataga
3961 aaagcgaaac gctaatgtca tgaatagcca aaaatatttt gatctggaaa atttagctaa
4021 taaggcggta gagagatttt tcgatttctt tatagatatg gagaaattct caaaactgcc
4081 aactggagtc ttaggctcga gtgctgaaca gatacaaacg taccagaata aaactggtaa
4141 taaggtgacg gacccagtct gtgttgcctt atccccaatt caaaaataca aacatatgat
4201 taagagggat gtcaaattca atttgactga tggtgctcaa agtgagtata ctaaagctgc
4261 caccattact tatcatcaac cagagataac tcaggttgct actgccattt ttggtcagtt
4321 taaaactaga ctgttggctt gtagaaataa gttcttaaat atacctcttg aacatgataa
4381 tgatttgagc ggatatttaa ccaaatatca tttggggagt gaaaataaca ctttcactga
4441 aattgacttt tctaaattcg ataaaagtca aggggaaatc catcaactca ttcaggattt
4501 aatcctgata aagttcggtt gtgatcccga gtttgtagcc ttatggtcta ccgcccacag
4561 aagttcttct attttcgatc aaaacgttgg aattggtttt aaaactgatt tccaaagaag
4621 aacgggcgat gcttttactt ttctgggaaa ctctttggta actgccgcca tgctggcgtt
4681 tgtcatcagt gacccagata gggagaagat taggtacatg ttggtgggtg gggacgattc
4741 tttgatctgc tcctacggtc caatacaagt acctttggaa ccattgggtg acatatttaa
4801 tatgtcttgc aagttggtac aaccagcttg tccttatttc gcgtctcgct acttgattag
4861 gagaggtgac gaaattttgt gtgttcccga cccctacaaa cttttggtga agttggggag
4921 gaaagacgtc ccggacaatc aagcatcatt atgcgagata cgtaccggat tggcagatag
4981 tgccaaatat atctttgatg atattgtgaa acagaagttg gctattcttg tacaggtgcg
5041 ctataataaa gctgcaccta gtttatatga tgccctttgc actgtgcatt gggcattatc
5101 ttctaatacc aatttctcga agttttacac tgttactaac acttccaatg aagtgcgaag
5161 gaacagaaga ggtgttaaga ttacttaata ccattttaat tctgcagcat tttcttttga
5221 ccggcttagt aataagtctt tgcctgtctc ttttcaatgc tgttattggt tttaaaacca
5281 aaaagtatct aaatcttgaa gatttaaaga taaatcttga aaaggaactt ttcaagcaca
5341 aagtcttgaa tgagtctctc tcaaggagac aaggtttctt aagcctagct cactaggctt
5401 aactcccaat ttgggagttg tccttacgga cgtttgctga gcaaacccc
//
