LOCUS NC_003790 6927 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Chicken astrovirus, complete genome.
ACCESSION NC_003790
VERSION NC_003790.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken astrovirus
ORGANISM Chicken astrovirus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
Stellavirales; Astroviridae; Avastrovirus.
REFERENCE 1 (sites)
AUTHORS Imada,T., Yamaguchi,S., Mase,M., Tsukamoto,K., Kubo,M. and
Morooka,A.
TITLE Avian nephritis virus (ANV) as a new member of the family
Astroviridae and construction of infectious ANV cDNA
JOURNAL J. Virol. 74 (18), 8487-8493 (2000)
PUBMED 10954549
REFERENCE 2 (bases 1 to 6927)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6927)
AUTHORS Imada,T., Yamaguchi,S., Mase,M., Tsukamoto,K. and Morooka,A.
TITLE Direct Submission
JOURNAL Submitted (27-OCT-1999) Tadao Imada, National Institute of Animal
Health, Department of Virology; 3-1-1, Kannondai, Tsukuba, Ibaraki
305-0856, Japan (E-mail:imadatad@niah.affrc.go.jp,
URL:http://ss.niah.affrc.go.jp/NIAH/hoge-s.html,
Tel:81-298-38-7760, Fax:81-298-38-7760)
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AB033998.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6927
/organism="Chicken astrovirus"
/mol_type="genomic RNA"
/strain="G-4260"
/serotype="Avian nephritis virus 1"
/db_xref="taxon:336959"
gene 14..4551
/locus_tag="ANVgp1"
/db_xref="GeneID:1732632"
CDS join(14..3028,3028..4551)
/locus_tag="ANVgp1"
/ribosomal_slippage
/note="composed of two sections ORF 1a and ORF 1b
separated by ribosomal frameshift;
serine protease, RNA-dependent RNA polymerase motif;
similar to human astrovirus reported in Acc# Z25771,
L13745"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="NP_620617.2"
/db_xref="GeneID:1732632"
/translation="MASAGPTGAGARPPKAFTAQAGLAKLVNPAGLNSILARGKEKFG
GTQAWKELMGCDVIFARSISHWYGIKGTTYYELTVALGQPLYKPVTDPELTEEEKAVM
TAVQSRFAQSNSSVVLTRTLLNKTCELKDRIRELTDELGQTEVHLAREKVKAAALKLE
NRKLFVENQELKDQLEKERTKHGWKGLKTLCLWIFLATLIGGYITGSNAACTLVDVPS
PMKVGYDTFKQMCIHKDSYLPDGAFDKESLALECSKQMDYMDCKEVITDSISGKTSFA
GMLRDVFRVDEIVTAIRTVVRFAMDFSLAYPICVMFVLILTRNKKHAIISACCALVAK
CCGLRLLPFTLVLTYAPSETAIAGCIYGLGYISIPLVTFLHWVGLVLKAILVPDDCYI
GTRVSHALAWSIMLPMWIITQELMAFTEFPLELQIVTTVVVCTAGFGFRYLTGTVTIT
EPDGTVKKYKRIFNAKSAIGTISTVFFEKAKAIRGVIPSFPSKADNIVKIEVDVDGGS
AGVGFRLGNYIYTAGHVVGEAKIAKITWKGLTSQAKVLGHIELPLFTDTLARLEIPKP
FQQLPVFRLAKSSENDYVQMVCFDNQLQNVVTFSGWANIDGDYLNAPFETYAGTSGSP
IINRDGRMLGVHFGSNAVVSQGFVITRLFATEPAVKQCKSDEDLADEIVRKVMGGIRI
SFASLTSELEKQRDELNALKQMVNDLIDTDLVALEKKKGKTKRTVRGQKHKTKAISKA
AFMKTKVLTEEEYRRLEEEGFTKDEIKDIVDNLREQAWLDYQNQLDEEGDDDWYEQME
EDQRINDQIDQNIERDLEDRGEWYGQRKITFKQRAMLRFIQLGRQQQVATVSFPDGYE
DRAEELYNKVVTTEDLPEGETSEAALSLPNKIVHQAGKRLNFKHVKIHPDKTFMKSGV
TQIEEKPEGDIILKAKTTTLAPKEEPVIQQVEQQPQVEQQQQPQQPVVEEKKRTPPPK
PQRKPKTGAKAKCLDCGETFVERQDFHVCKSKNLNEPPSGGYTPVPDHLRWNNWQIYM
EPLDLRITVPENYPILGHIAIDKLVERKKKVNDPLLKMLEQPKCEGFTSTTWTRKAYT
KSFEKFDYGDAVDFVQDYPELTAFADAAVLAEVGYMEGTHVIPIQETSKNMDSTPAFP
KMLDFDSERDYLEAHGMKEYIDTQLGVQSGKPLWWCFLKNEILKEKKVSEDDIRIITC
SDPVITRLGASFDSEQNERMKERTETHHAQVGWTPFFGGLDKRVRRITSCGRTQVLEL
DWTRFDGTIPVQLFQRMRELRKFFLTRRSRRRYGKLLDWYNAQLTDRITLLPTGEVTH
VKKGNPSGQFSTTVDNNLVNEWLTAFEFGYQHLENHGIIPTVRDYRANVDFLCYGDDR
LLAFNPSFVNYDPQVTIDMYKNIFGMWVKPENIKLFDSPTGSSFCGFTLVKPHGQWVG
VVNVNKLLQSLKTPTRRLPDLESLWGKLVSLKIMCYHSDPEAVSYLSNQIRRVEEYAR
AEGIELPEVGPDFYRKIW"
misc_feature 1541..1918
/locus_tag="ANVgp1"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:433149"
misc_feature 3541..4284
/locus_tag="ANVgp1"
/note="catalytic core domain of RNA-dependent RNA
polymerase (RdRp) in the family Astroviridae of
positive-sense single-stranded RNA [(+)ssRNA] viruses;
Region: ps-ssRNAv_Astroviridae_RdRp; cd23172"
/db_xref="CDD:438022"
misc_feature 3784..3828
/locus_tag="ANVgp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438022"
misc_feature 3985..4056
/locus_tag="ANVgp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438022"
misc_feature 4117..4161
/locus_tag="ANVgp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438022"
regulatory 3022..3028
/regulatory_class="other"
/locus_tag="ANVgp1"
/note="shifty heptamer for frameshifting"
stem_loop 3035..3052
/locus_tag="ANVgp1"
/note="stem-loop involved in ribosomal frameshifting"
gene 4571..6622
/gene="ORF 2"
/locus_tag="ANVgp2"
/db_xref="GeneID:944348"
CDS 4571..6622
/gene="ORF 2"
/locus_tag="ANVgp2"
/codon_start=1
/product="structural polyprotein"
/protein_id="NP_620618.1"
/db_xref="GeneID:944348"
/translation="MAGGATAPAGAKPKQPKQKQKKPSSQARKKPSQKQKAMKPVKQE
LRKVEKQVRVLKARTNGPKVNDTMKTTVTVGTLVGQTQSGLNRQLRVSFNPLLMKSTE
GGSTTPLSIRASMYEMWKPLSVEIFATPLSGFSSVVGSVGFMVITLNGLEASADSIDT
IKARRHVQMALGRPYRLKLSARELAGPREGWWLVDTSEAPADAYGPAVDLMLAYATEN
LLGTSSGSTTSYTGTLWQVEMRVTYAFSTYNPKPGLQTLVSQSITGGQTVTIQPSPDD
GSLIMTTNSQQVLALLTPRVAGQRKGKSQTIWAIAGSAVDAAATVLGPWGYLLKGGFW
LVRLIFGGSSARNTTTRQYQIYPSVESALTDQPIFGNSTGTQSVTVPICHITEVVNPN
AESNNLPPPTTGAQPQPQPPAPIEEILLPLAELTGQPGVPPLYTFDGSSYTPPTNWLG
STILLTGIPAHKRVTGNLAKFGVTNLQMSKVAATALEIYDFTDFGVFFGTGSYLSEGG
IHTGKTLIYSLMSGQTPNPWLAANQSGTTWYMPSWAGFPQPGQGDYFLQMQDVTDTTT
HTTSVNVYFLVAYRQSRRLIAFFNTGGTARPAPTSMLCLYNVDCGRAPQTPYPTFQST
LQSLNQIGVDAKSDPDSDDDISLAGSVIGDEFDSVDHLEREREDLMRRLRDLDLRRFQ
I"
misc_feature 4640..5746
/gene="ORF 2"
/locus_tag="ANVgp2"
/note="Astrovirus capsid protein precursor; Region:
Astro_capsid_N; pfam03115"
/db_xref="CDD:367340"
ORIGIN
1 ccgaatagat gggatggctt cggccggccc tactggggcg ggggctcgcc ccccaaaggc
61 tttcactgct caggccggac tggccaaatt ggtcaatccg gccggcttaa atagcatcct
121 cgctagaggg aaagaaaagt ttggaggcac ccaagcttgg aaagaactca tgggatgtga
181 tgttattttt gcaagatcca tcagtcactg gtatgggatt aaggggacga cttactatga
241 gcttactgtc gcactcggcc aacctctgta caaaccagtt acagatcctg aactgactga
301 agaggaaaag gccgtgatga ctgcagttca atctcggttt gcgcaaagta actctagtgt
361 tgttctcacc cgcacgctcc tgaataaaac ctgtgaactc aaggacagaa ttcgcgaact
421 tactgatgaa ttgggacaaa cagaagttca cctggcgcgt gaaaaagtga aagcagcggc
481 cttgaagctt gagaatagaa aactttttgt tgaaaatcag gaacttaaag accaacttga
541 gaaggagaga accaaacacg gctggaaggg cttgaaaaca ctgtgcctct ggatctttct
601 tgcgacatta attggtggtt acatcactgg ctctaacgca gcgtgtaccc ttgtcgatgt
661 tccatcccca atgaaagttg gttatgacac ttttaaacaa atgtgcatcc ataaggactc
721 ctatctacct gatggtgcct ttgacaaaga atctctggca cttgagtgtt ccaagcaaat
781 ggactatatg gattgcaaag aagttataac cgactcgatt tcagggaaga cttcctttgc
841 tggtatgctg cgtgatgttt ttagagtcga tgagattgtt actgctataa ggactgttgt
901 tcgctttgca atggacttca gtcttgcata cccaatttgt gtcatgttcg tgctcatctt
961 gaccagaaac aaaaaacatg caataatatc agcgtgttgt gcccttgttg ccaagtgttg
1021 tggattaaga cttttaccat tcactttagt tctcacttat gccccatctg aaacagctat
1081 agcaggttgt atttatggcc ttggctatat tagtatacca ttggtaacgt ttctccattg
1141 ggtcggtctt gtacttaagg ctattctcgt tcccgatgat tgctatatag gtactagggt
1201 gtcacatgca cttgcctggt ccataatgtt accaatgtgg attataacgc aagaacttat
1261 ggcatttaca gagtttcctc ttgaactcca aatagtcact accgtggttg tttgtacggc
1321 tgggttcggc ttccgttatc taactggtac ggttacgatt actgaaccag atggaaccgt
1381 aaagaagtac aagaggattt ttaatgccaa gagtgcaatt ggcactattt caacagtttt
1441 ttttgaaaaa gccaaggcca tacgtggggt gataccttcc ttcccaagta aggccgataa
1501 catcgtaaaa attgaggtag atgttgatgg tggttctgct ggagttggct ttagacttgg
1561 caactacatc tacacagcag gccatgttgt tggagaagca aaaatagcta aaatcacctg
1621 gaaaggctta acatctcaag ccaaggttct cggtcacatt gagttaccac tcttcacaga
1681 tacgcttgct cgtcttgaaa ttccaaaacc ttttcaacaa ctcccagtct ttagactagc
1741 aaagtcttct gagaacgact atgtgcagat ggtctgtttt gacaatcaat tgcaaaacgt
1801 tgtcactttc tcaggctggg ctaatattga cggcgattac ctgaatgctc ccttcgaaac
1861 ctatgcaggt acatcgggtt cacctattat aaatagggac gggaggatgc ttggtgtcca
1921 ttttggtagt aacgccgttg tgtcacaagg ttttgtgatc actaggcttt ttgcaactga
1981 gccagcggtt aagcagtgca agtctgatga agacctcgct gatgagattg ttcgtaaggt
2041 catgggcggt attaggattt cctttgcttc actcacatca gagctcgaga agcagcgcga
2101 tgaacttaac gcgctcaaac aaatggtcaa tgatcttata gacactgacc ttgttgccct
2161 cgagaagaag aaaggtaaga ctaagaggac cgttcgtggg cagaaacata agaccaaagc
2221 gatctctaag gctgccttca tgaaaactaa agtcctcacc gaagaagaat atcgccggtt
2281 agaggaggaa ggcttcacta aagatgagat caaggacatc gttgacaatc tcagagagca
2341 ggcgtggctc gactatcaga accaacttga tgaagaaggt gatgatgact ggtacgaaca
2401 aatggaagag gatcaaagaa ttaatgatca aattgaccaa aacattgaaa gagacctcga
2461 ggatagaggt gaatggtatg gtcagaggaa aataaccttc aagcaaagag cgatgcttcg
2521 tttcattcaa cttggccggc aacaacaggt ggccactgtc tcatttcctg atggttatga
2581 ggacagagct gaagaactct acaataaggt cgtcacaact gaagaccttc cagaaggcga
2641 aacttcagaa gcagcgctta gcctccccaa taaaattgtt catcaggcgg ggaagaggtt
2701 aaacttcaaa catgttaaga tacacccaga taagactttt atgaagtctg gtgttacaca
2761 aattgaagaa aagccagaag gtgatattat cctcaaagcc aaaacaacaa ctttggcccc
2821 taaggaagaa ccagtcatcc aacaggttga acaacaacct caagttgagc aacaacaaca
2881 acctcaacag cctgttgtgg aggagaagaa aagaacacca ccaccaaaac cacaaagaaa
2941 accaaagaca ggtgcaaaag cgaaatgcct cgattgtggc gagactttcg ttgaaaggca
3001 agacttccac gtttgtaagt caaaaaacta aatgagcccc cttcgggggg ctacacacct
3061 gtccctgacc atcttaggtg gaacaactgg caaatctata tggaacctct tgacttgaga
3121 ataacagtac ctgaaaacta tcctattctg ggtcatatcg ccatagataa attggttgaa
3181 cgtaagaaaa aggtcaatga cccgcttctc aaaatgcttg aacaaccaaa atgtgagggc
3241 tttacatcaa caacttggac tcgtaaagcg tacacaaaat cttttgagaa gtttgactat
3301 ggcgatgcgg ttgattttgt gcaggactat cctgaactca ctgctttcgc agatgcagct
3361 gtacttgctg aggttggtta catggaggga acacatgtca ttcccatcca agaaaccagc
3421 aagaacatgg attctacacc tgcctttccc aaaatgcttg acttcgatag tgaaagggac
3481 tatctcgaag cacatgggat gaaagagtac attgatactc agttaggtgt gcaatctggc
3541 aaaccacttt ggtggtgctt ccttaaaaat gagatcctta aggaaaagaa agtcagtgaa
3601 gatgatatca ggattatcac ctgttcagac ccagtaataa ctaggctagg cgcctctttt
3661 gattcagaac aaaatgagcg catgaaggag agaacagaaa cgcatcatgc tcaggtgggc
3721 tggaccccct tctttggtgg actggataag cgtgtcagga gaattacgtc ctgtggcagg
3781 acccaagtcc tagaacttga ttggacgcga ttcgatggca ccattccggt tcagctcttc
3841 caaagaatgc gtgagctgcg taaattcttt ctcactaggc gttcaaggag gcgctatggc
3901 aagttacttg actggtacaa cgcccagtta acagatagaa tcactcttct tccaactgga
3961 gaggtaactc atgtcaagaa aggcaaccca tctgggcaat tttcaacaac agttgacaac
4021 aaccttgtta atgagtggtt gactgctttt gagtttggtt accaacactt ggagaaccat
4081 ggcattattc caacagtcag agactaccgg gccaacgttg actttctttg ctatggagat
4141 gataggcttt tagctttcaa tccatccttt gtcaactacg accctcaggt gaccattgat
4201 atgtataaaa atatctttgg gatgtgggtc aaacctgaaa acattaagct ctttgactcg
4261 ccaactggtt cttccttctg cggcttcact ttagttaagc cgcatgggca atgggtggga
4321 gtagttaatg tcaacaaact ccttcagagt cttaaaacac ccacgcgcag gctgccagac
4381 cttgaatccc tgtggggcaa gctcgtgtcg ctgaagatta tgtgctatca cagtgaccct
4441 gaggctgtgt cctacctttc caaccagata aggcgtgttg aagaatacgc tcgtgctgaa
4501 gggattgaac ttcctgaagt cgggcccgac ttctacagaa aaatctggtg agcggaggac
4561 caaaataact atggctggcg gtgccaccgc acctgcgggc gctaagccca agcaacctaa
4621 acagaagcag aaaaaaccat cttcacaggc aagaaagaag ccttcccaaa aacagaaggc
4681 aatgaaacca gtcaaacagg agttgaggaa ggttgaaaag caagtgagag tcctcaaggc
4741 gcgtacaaac ggacctaaag tcaatgacac aatgaagacc accgtaacag tgggcactct
4801 tgttggacaa acacaaagtg gattaaatcg ccaactcagg gtctctttta acccacttct
4861 tatgaagtcg acagaaggcg gtagcactac tccactctcc attcgtgcct caatgtacga
4921 gatgtggaaa ccactgagtg tggaaatttt tgccacgcca cttagtggct tctctagcgt
4981 ggtaggctca gttggtttta tggtcataac cttgaatgga cttgaggctt ccgcagattc
5041 aattgacacc ataaaagcca gaagacatgt ccagatggcg cttggcaggc cgtataggct
5101 taaactaagt gcccgtgaac ttgctggacc ccgtgaaggc tggtggctcg ttgacacttc
5161 tgaggcacct gccgatgcgt atggcccagc tgttgatctc atgctggcat atgcaactga
5221 gaatctactt ggaacatctt ccggctccac aacttcctat acaggcacac tctggcaagt
5281 cgaaatgagg gttacctatg cattctccac ttacaaccca aaacctgggc tgcaaaccct
5341 tgtttcacag tccattactg gtggtcaaac tgtgaccatt caaccgtctc cggatgatgg
5401 gtcacttatt atgactacca atagccaaca agtcctagca ctcctaacac ccagggtggc
5461 gggtcagagg aagggcaaat cccaaactat ttgggcaatt gccggctctg ctgtcgatgc
5521 cgctgccaca gtgcttggac catggggcta ccttctaaaa ggtggcttct ggcttgttcg
5581 actcatcttt ggtgggtcct ctgcaaggaa cacaacaaca aggcagtacc agatttatcc
5641 atcggtcgag tcagctttga ccgaccagcc aatttttggc aattctactg gtactcagag
5701 tgtcactgtg ccaatttgcc acatcactga agttgtgaac cccaatgcgg aaagtaacaa
5761 ccttccccct ccaacgacag gagctcaacc tcaacctcaa cctcctgctc ctattgaaga
5821 aatacttctg cctttagcag aactgactgg acaaccgggg gttccacctc tttatacttt
5881 tgatggcagt agctataccc ccccaacaaa ctggctgggt tcaacaattc ttctcacagg
5941 aataccagct cacaagcgag ttactggaaa tctcgcaaaa tttggagtta ccaatctcca
6001 aatgtccaaa gttgcagcta ctgcacttga gatctatgac tttacagact ttggagtctt
6061 ctttggtacg ggaagctacc tctcggaggg gggaatacac actgggaaaa ccctgatcta
6121 ttcattaatg tctggccaaa caccaaatcc ttggctagca gcaaaccaat ctggcactac
6181 gtggtacatg ccttcttggg caggctttcc acaaccaggt cagggtgact acttcctcca
6241 aatgcaggat gtcacagata caacaactca tactacatct gtgaatgtgt acttcctagt
6301 ggcttaccgc cagtctcgaa ggcttatagc cttcttcaat actggaggca cagctcgtcc
6361 agcaccaaca tcaatgcttt gtctctacaa tgttgactgt gggcgtgctc cacaaacgcc
6421 ctaccccacc tttcagtcaa ctctccaaag tttgaatcaa attggggtgg atgcaaaatc
6481 tgatcccgac tccgacgatg acatctcact cgcggggtcg gttattggcg acgagtttga
6541 tagtgtggat catctcgaac gcgaaagaga agacctaatg aggaggctca gagatctaga
6601 cctccggcgc tttcagatct aagcgccacc acactgggta actgactaca gttgagaagg
6661 ggtggaccgt aaaccactgg ttggctgact acagcaactg actttcccga ggccacggcg
6721 agtagcatcg agggtacagg aaagctggga ccattgcata gtcaactaat ttggctgtgc
6781 tagggggacc aatggggtgg taggtcaatc aaaccgccac tcacgcaact tggagcctgc
6841 taaaacctac gctcctgtgc gctaaagttg gttctcccga aagtgggctt ttcattattt
6901 gaattaattt tgaattggct aactttt
//
