LOCUS       NC_003812               1005 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Subterranean clover stunt virus m-rep gene for 33.24 kDa master Rep
            protein (SCSV8).
ACCESSION   NC_003812
VERSION     NC_003812.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq; m-rep gene; master Rep protein.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1
  AUTHORS   Timchenko,T., Katul,L., Sano,Y., de Kouchkovsky,F., Vetten,H.J. and
            Gronenborn,B.
  TITLE     The master rep concept in nanovirus replication: identification of
            missing genome components and potential for natural genetic
            reassortment
  JOURNAL   Virology 274 (1), 189-195 (2000)
   PUBMED   10936099
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1005)
  AUTHORS   Katul,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2000) Katul L., Inst.Plant Virology, Microbiology
            and Biosafety, Federal Biol. Res. Centre for Agriculture and
            Forestry, Messeweg 11-12, 38104 Braunschweig, GERMANY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AJ290434.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="F"
                     /host="Trifolium subterraneum L."
                     /db_xref="taxon:36772"
                     /country="Australia"
     stem_loop       1..29
     gene            112..972
                     /gene="m-rep"
                     /locus_tag="SCSVs8gp1"
                     /db_xref="GeneID:991157"
     CDS             112..972
                     /gene="m-rep"
                     /locus_tag="SCSVs8gp1"
                     /function="replication initiator protein"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /codon_start=1
                     /product="33.24 kDa master Rep protein"
                     /protein_id="NP_620694.1"
                     /db_xref="GOA:Q9ICP7"
                     /db_xref="InterPro:IPR000605"
                     /db_xref="InterPro:IPR003365"
                     /db_xref="UniProtKB/Swiss-Prot:Q9ICP7"
                     /db_xref="GeneID:991157"
                     /translation="MARQVICWCFTLNNPLAPLSLHESMKYLVYQTEAGDNGTIHYQG
                     YVEMKKRTSLVQMKKLLPGAHLEKRRGSQGEARAYAMKEDSRVEGPWEFGEFKEVLED
                     KLRSVMEDMKSTGKRPVEYIEDCCNTYDKSSATLREFRGELKKKQAIEEWQLQRQPWM
                     DEVERLMETKDCRRIIWVYGPQGGEGKTSYAKHLVKTRDAFYSTGGKTADIAFAWDHQ
                     ELVLFDFPRSFEEYVNYGVIEQLKNGIVQSGKYQSIVKYCNYVEVIVFANFIPRSGMF
                     SEDRIVIVYA"
     misc_feature    124..360
                     /gene="m-rep"
                     /locus_tag="SCSVs8gp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    637..915
                     /gene="m-rep"
                     /locus_tag="SCSVs8gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 ggcacggggc ttagtattac ccccgtgccg gggtcagaga catcacgtga ctctcacatt
       61 attgtttaat atatatatgt gtgttgggtt gattatttta ttcaataaaa tatggctaga
      121 caagttatat gctggtgctt tacattaaac aatcctctcg ctcctctctc tcttcatgaa
      181 agtatgaaat acttagttta tcagactgaa gctggtgata atggaactat tcattatcaa
      241 ggctatgtgg aaatgaagaa gagaacttct ctggtgcaaa tgaagaaatt gcttcctggt
      301 gctcatctgg agaagagaag aggttcacaa ggagaagcta gagcttatgc tatgaaagaa
      361 gattcaaggg ttgaaggtcc ttgggagttt ggagagttta aggaggtttt ggaagataag
      421 ctgcgttctg tcatggaaga catgaaatca actgggaaac gtccagttga gtatatagaa
      481 gattgttgta acacttacga caaatcttct gcaacgctga gagagtttag aggagaattg
      541 aagaagaaac aggcaattga agagtggcag ttgcagaggc agccatggat ggacgaggtt
      601 gaaagattga tggagacgaa ggactgtaga cgaataattt gggtgtatgg cccacaaggt
      661 ggagaaggga agacatcgta cgcaaagcat cttgtgaaga cgcgtgatgc tttttactcg
      721 acaggcggaa agacagccga catagctttt gcgtgggacc atcaagagtt agtgctattc
      781 gactttcctc gaagcttcga ggaatacgtc aattacggcg tcattgaaca gctaaagaat
      841 ggcattgtac agtctggaaa gtatcaaagt attgtaaagt attgtaatta tgtagaagtt
      901 attgtatttg ctaattttat tccgcgaagc ggtatgttta gtgaggatag gattgtaatt
      961 gtgtatgcgt aagtgagatg acgtcatatg tctccgcgac aggct
//