LOCUS       NC_003813               1001 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Subterranean clover stunt virus (SCSV1) gene, complete cds.
ACCESSION   NC_003813
VERSION     NC_003813.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Boevink,P., Chu,P.W. and Keese,P.
  TITLE     Sequence of subterranean clover stunt virus DNA: affinities with
            the geminiviruses
  JOURNAL   Virology 207 (2), 354-361 (1995)
   PUBMED   7886939
REFERENCE   2  (bases 1 to 1001)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1001)
  AUTHORS   Boevink,P.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-1994) Petra C. Boevink, C.S.I.R.O. Division of
            Plant Industry, GPO Box 1600, Canberra ACT 2601, Australia
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to U16730.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /host="Trifolium subterraneum L."
                     /db_xref="taxon:36772"
                     /chromosome="component 1"
                     /lab_host="Trifolium subterraneum cv. Mt. Barker"
     stem_loop       join(992..1001,1..17)
                     /note="region of sequence and predicted structural
                     similarity with the conserved stem-loop sequence in the
                     intergenic region of the geminiviruses, which is the
                     origin of replication"
     gene            238..576
                     /gene="SCSV1"
                     /locus_tag="SCSVs1gp1"
                     /db_xref="GeneID:991158"
     CDS             238..576
                     /gene="SCSV1"
                     /locus_tag="SCSVs1gp1"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="NP_620695.1"
                     /db_xref="GeneID:991158"
                     /translation="MDSGDGYNTYSYEEGAGDAKKEVLYKIGIIMLCIVGIVVLWVLI
                     ILCCAVPRYAKSTMDAWLSSSSIMKRKMASRITGTPFEETGPHRERRWAERRTEATNQ
                     NNNDNVNRFS"
ORIGIN      
        1 tagtattacc cccgtgccgg gatcagagac atttgaccaa tagttgacta gtataatagc
       61 ccttggatta aatgacacgt ggacgctcag gatctgtgat gctagtgaag cgcttaagct
      121 gaacgaatct gacggaagag cgttcacact tagatctagt tagcgtactt agtacgcgtt
      181 gtcttgggtc tataaataga gtgcttctga acagattgtt cagaatttca tagcgagatg
      241 gattctggtg atggttacaa tacatactca tatgaagaag gtgctggaga tgcgaagaag
      301 gaagttttat ataaaatagg tattattatg ttatgtattg tagggattgt agttttatgg
      361 gttttaatta tattatgttg tgctgttcct cgctatgcta aatcaacgat ggacgcttgg
      421 ttatcttcgt cttctattat gaagaggaag atggcttcaa ggattactgg tactccgttt
      481 gaagaaactg gtcctcatcg tgaaagaaga tgggctgaaa gaagaactga agcgacgaac
      541 cagaataata atgataatgt aaatagattt agttgatatg ttgtaatttt atatggatta
      601 atgagaatta ttattattct gttcttcgtc tgtgtttttt aagctttttc tgtgttttaa
      661 tggcgtctgg agagagaaag gaataattgt aaggtagacg acgatgtagt ggattacagt
      721 tgtctttact tcgcctcgaa gaaagacaca tttcaagttg tgagtgttat tgcttttgag
      781 gaagcttcct cgaagcagcg tataacttta atttgaattt ggttttggcg cgttagtgaa
      841 attgcggctg taaacgtgtc aagttgtgag tggctgaaat aagataatag atatattatt
      901 attgttttaa tttaattccg cgaagcgata tgttaagtga taaatgaaac gaagcgtttt
      961 gatgacgtca tatgtctccg tgcctacgtc agcacggggc t
//