LOCUS       NC_003816               1002 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Subterranean clover stunt virus (SCSV4) gene, complete cds.
ACCESSION   NC_003816
VERSION     NC_003816.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Boevink,P., Chu,P.W. and Keese,P.
  TITLE     Sequence of subterranean clover stunt virus DNA: affinities with
            the geminiviruses
  JOURNAL   Virology 207 (2), 354-361 (1995)
   PUBMED   7886939
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1002)
  AUTHORS   Boevink,P.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-1994) Petra C. Boevink, C.S.I.R.O. Division of
            Plant Industry, GPO Box 1600, Canberra ACT 2601, Australia
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to U16733.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="F"
                     /host="Trifolium subterraneum L."
                     /db_xref="taxon:36772"
                     /chromosome="component 4"
                     /lab_host="Trifolium subterraneum cv. Mt. Barker"
     stem_loop       join(992..1002,1..17)
                     /note="region of sequence and predicted structural
                     similarity with the conserved stem-loop sequence in the
                     intergenic region of the geminiviruses, which is the
                     origin of replication"
     gene            344..805
                     /gene="SCSV4"
                     /locus_tag="SCSVs4gp1"
                     /db_xref="GeneID:991161"
     CDS             344..805
                     /gene="SCSV4"
                     /locus_tag="SCSVs4gp1"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="NP_620698.1"
                     /db_xref="GeneID:991161"
                     /translation="MADWFHSALKTCTHVCDFSDIKASSQQDFFCCDSMRGKLSEPRK
                     VLLVSCFVSFTGSFYGSNRNVRGQVQLGMQQDDGVVRPIGYIPIGGYLYHDDYGYYQG
                     EKTFNLDIESDYLKPDEDFWKRFTINIVNDKGLDDRCDVKCYVVHTMRIKV"
     misc_feature    350..802
                     /gene="SCSV4"
                     /locus_tag="SCSVs4gp1"
                     /note="Nanovirus component 8 (C8) protein; Region:
                     Nanovirus_C8; pfam05629"
                     /db_xref="CDD:283319"
ORIGIN      
        1 tagtattacc ccgtgccggg atcagagaca tttgactaaa tgttgacttg gaataatagc
       61 ccttggatta gatgacacgt ggacgctcag gatctgtgat gctagtgaag cgcttaagct
      121 gaacgaatct gacggaagag cggacaaacg cacatggact atggcccact gctttattaa
      181 agaagtgaat gacagctgtc tttgcttcaa gacgaagtaa agaatagtgg aaaacgcgta
      241 aagaataagc gtactcagta cgcttcgtgg ctttataaat agtgcttcgt cttattcttc
      301 gttgtatcat caacgaagaa gttaagcttt gttctgcgtt ttaatggcgg actggtttca
      361 cagtgcgctt aagacatgta ctcatgtctg tgatttttca gatattaagg cgtcttcaca
      421 acaggatttc ttctgttgtg atagtatgcg aggtaaatta tctgaaccta ggaaggtgtt
      481 gttagttagt tgttttgtaa gttttactgg tagtttttat ggaagtaata ggaatgttag
      541 aggtcaagtt cagttgggta tgcagcaaga tgatggcgtt gttcgtccaa taggatatat
      601 tcctattggg ggttatttgt atcatgatga ttatggatat tatcaaggag agaagacgtt
      661 caatctggac atcgagtcag attatctgaa gcctgatgaa gatttttgga agagatttac
      721 aattaatatt gtaaatgata aaggattaga tgataggtgt gatgtaaaat gttatgtagt
      781 tcatacgatg cgtattaagg tgtaattgtt attatcaata aaagaatttt tattgttatt
      841 gtgttatttg gtaatttatg cttataagta attctatgat taattgtgaa ttaataagac
      901 taatgaggat aataattgaa tttgattaaa ttaactctgc gaagctatat gtctttcacg
      961 tgagagtcac gtgatgtctc cgcgacaggc tggcacgggg ct
//