LOCUS       NC_003817                998 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Subterranean clover stunt virus coat protein (SCSV5) gene, complete
            cds.
ACCESSION   NC_003817
VERSION     NC_003817.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Boevink,P., Chu,P.W. and Keese,P.
  TITLE     Sequence of subterranean clover stunt virus DNA: affinities with
            the geminiviruses
  JOURNAL   Virology 207 (2), 354-361 (1995)
   PUBMED   7886939
REFERENCE   2  (bases 1 to 998)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 998)
  AUTHORS   Boevink,P.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-1994) Petra C. Boevink, C.S.I.R.O. Division of
            Plant Industry, GPO Box 1600, Canberra ACT 2601, Australia
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to U16734.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="F"
                     /host="Trifolium subterraneum L."
                     /db_xref="taxon:36772"
                     /chromosome="component 5"
                     /lab_host="Trifolium subterraneum cv. Mt. Barker"
     stem_loop       join(988..998,1..17)
                     /note="region of sequence and predicted structural
                     similarity with the conserved stem-loop sequence in the
                     intergenic region of the geminiviruses, which is the
                     origin of replication"
     gene            367..876
                     /gene="SCSV5"
                     /locus_tag="SCSVs5gp1"
                     /db_xref="GeneID:991162"
     CDS             367..876
                     /gene="SCSV5"
                     /locus_tag="SCSVs5gp1"
                     /note="coat protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="NP_620699.1"
                     /db_xref="GeneID:991162"
                     /translation="MVAVRWGRKGLRSQRRKYSRIAYKPPSSKVVSHVESVLNKRDVT
                     GAEVKPFADGSRYSMKKVMLIATLTMAPGELVNYLIVKSNSPIANWSSSFSNPSLMVK
                     ESVQDTVTIVGGGKLESSGTAGKDVTKSFRKFVKLGSGISQTQHLYLIIYSSDAMKIT
                     LETRMYIDV"
     misc_feature    379..873
                     /gene="SCSV5"
                     /locus_tag="SCSVs5gp1"
                     /note="Nanovirus coat protein; Region: Nanovirus_coat;
                     pfam04660"
                     /db_xref="CDD:282509"
ORIGIN      
        1 tagtattacc ccgtgccggg gtcagagaca tttgactaaa tattgacttg gaataatagc
       61 ccttggatta gatgacacgt ggacgctcag gatctgtgat gctagtgaag cgcttaagct
      121 gaacgaatct gacggaagag cgtcatggtc cacatgtcta aagaataatg ctttacagct
      181 gtattgattt gactttacgc gctttacttt aattgcttta agtaaagtaa gatgctttac
      241 tttgctcgcg acgaagcaaa gtgattgtag ctgcagaaat tgatgcttta attaccgggt
      301 aacacggttt gattgtgggt ataaatatgt tctgttcgtt ttcttcgttg tcattttaca
      361 acgaagatgg ttgctgttcg atggggaaga aagggtctga ggtctcaaag gagaaaatat
      421 tcgcgaattg cttacaaacc tccttcgtct aaggttgtaa gtcatgtgga gtctgttctg
      481 aataagagag atgttactgg agcggaggtt aagccattcg ctgatggttc aaggtatagt
      541 atgaagaagg taatgttgat tgcaacatta actatggctc ctggagaatt agttaattat
      601 cttattgtga agagtaattc gcctattgcg aattggagtt cgtctttcag taatccttcg
      661 ttgatggtga aagagtctgt tcaagataca gttacgattg ttggaggagg aaagcttgag
      721 tcttctggta ctgctggtaa agatgtaact aagtctttta ggaagtttgt taagctgggt
      781 tcaggtatta gtcagaccca gcatttgtat ttaattattt attccagtga tgcgatgaag
      841 atcacactgg agacgagaat gtatattgat gtataattgt gatgattaat gaataaagag
      901 ttgtttttat tctttgaatt actccgcgaa gcggtgtgtt atgtttttgt tggagacata
      961 tgacgtcata tgtctccgcg acaggctggc acggggct
//