LOCUS NC_004179 2715 bp ds-RNA linear VRL 13-AUG-2018
DEFINITION Infectious bursal disease virus segment B, complete sequence.
ACCESSION NC_004179
VERSION NC_004179.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq; RNA polymerase; VP1.
SOURCE Infectious bursal disease virus (Gumboro virus)
ORGANISM Infectious bursal disease virus
Viruses; Riboviria; Orthornavirae; Birnaviridae; Avibirnavirus;
Avibirnavirus gumboroense.
REFERENCE 1 (bases 1 to 2715)
AUTHORS Brown,M.D. and Skinner,M.A.
TITLE Coding sequences of both genome segments of a European 'very
virulent' infectious bursal disease virus
JOURNAL Virus Res. 40 (1), 1-15 (1996)
PUBMED 8725117
REFERENCE 2 (bases 1 to 2715)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2715)
AUTHORS Skinner,M.A.
TITLE Direct Submission
JOURNAL Submitted (03-NOV-1995) M.A. Skinner, Institute for Animal Health,
Compton Laboratory, Near Newbury, Berkshire, RG20 7NN, UK
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from X92761.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2715
/organism="Infectious bursal disease virus"
/mol_type="genomic RNA"
/strain="Very virulent strain"
/isolate="UK661"
/db_xref="taxon:10995"
/segment="B"
/lab_host="Gallus gallus (light Sussex)"
/note="serotype: I"
gene 44..2683
/locus_tag="IBDVsBgp1"
/db_xref="GeneID:956510"
CDS 44..2683
/locus_tag="IBDVsBgp1"
/codon_start=1
/product="VP1 RNA-dependent RNA polymerase"
/protein_id="NP_690839.1"
/db_xref="UniProtKB/TrEMBL:Q82630"
/db_xref="GeneID:956510"
/translation="MSDVFNSPQARSKISAAFGIKPTAGQDVEELLIPKVWVPPEDPL
ASPSRLAKFLRENGYKILQPRSLPENEEYETDQILPDLAWMRQIEGPVLKPTLSLPIG
DQEYFPKYYPTHRPSKEKPNAYPPDIALLKQMIYLFLQVPEATDNLKDEVTLLTQNIR
DKAYGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGED
DKPWVPLTRVPSRMLVLTGDVDGEFEVEDYLPKINLKSSSGLPYVGRTKGETIGEMIA
ISNQFLRELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFPKAERYDKSTCCTKT
RNKWSAQSSTHLMISMITWPVMSNSPNNVLNIEGCPSLYKFNPFRGGLNRIVEWIMAP
DEPKALVYADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWSDNGDPMFN
QTWATFAMNIAPALVVDSSCLIMNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMK
QPSPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVPLAQPGYLSGGVEPEQPSPTV
ELDLLGWSATYSKDLGIYVPVLDKERLFCSAAYPKGVENKSLKSKVGIEQAYKVVRYE
ALRLVGGWNYPLLNKACKNNASAARRHLEAKGFPLDEFLAEWSELSEFGEAFEGFNIK
LTVTPESLAELNRPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATA
RSRLQDAVKAMAEAEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETS
DALEAVQSTSVYTPKYPEVKNPQTASHPVVGLHLPAKRATGVQAALLGAGTSRPMGME
APTRSKNAVKMAKRRQRQKESRQ"
misc_feature 44..2449
/locus_tag="IBDVsBgp1"
/note="Birnavirus RNA dependent RNA polymerase (VP1);
Region: Birna_RdRp; pfam04197"
/db_xref="CDD:398048"
ORIGIN
1 agctgctacg gtaagcgtcc ctcttcttga tgattctacc accatgagtg acgttttcaa
61 tagtccacag gcgcgaagca agatatcagc agcgttcggc ataaagccta cagctggaca
121 agatgtggaa gaactcctga tccctaaggt ctgggtgcca cctgaggatc ccttggccag
181 ccctagtcgt ctggccaagt tcctcaggga aaacggctac aagattctgc agccacggtc
241 tctacctgag aatgaggagt atgagaccga tcaaatactc cctgacctag cttggatgag
301 gcagatagag ggacctgttt taaaaccaac cctatctctc cccattgggg accaggagta
361 cttcccaaaa tactacccaa cacaccgccc gagcaaggaa aagcccaatg cgtacccgcc
421 cgatatcgca ttactcaagc agatgatcta cttgtttctc caggttcccg aggccacaga
481 taacctcaaa gatgaggtca ccctactaac ccaaaacatt agagataaag cctacgggag
541 tgggacctac atgggacagg ccaccagact tgttgctatg aaagaggttg ccactgggag
601 aaacccaaac aaagatcctc taaagcttgg gtacaccttt gagagcatag cccagctact
661 tgacatcact ttaccggtag gcccacccgg tgaggatgac aagccctggg taccactcac
721 aagggtgccg tcaaggatgt tggttctgac gggcgacgta gatggggaat ttgaggttga
781 ggactacctt cccaaaatca acctcaagtc atcaagtgga ctgccctatg ttggtcgcac
841 caaaggagaa actattgggg agatgatagc catatcgaac cagtttcttc gagagctatc
901 agcgctgctg aagcagggtg cagggacaaa agggtcgaac aagaagaagc tgctcagcat
961 gctaagtgac tactggtact tatcatgtgg gcttttgttt cccaaggctg agaggtacga
1021 caaaagcaca tgctgcacca agacccgtaa caaatggtca gctcaatcgt caacacacct
1081 gatgatctca atgataacct ggcccgtgat gtccaatagc ccaaacaacg tgttgaacat
1141 tgaggggtgt ccgtcactct acaagttcaa cccgtttaga ggtgggctaa acaggatcgt
1201 ggagtggata atggctccgg atgaacccaa ggccttagta tatgctgaca acatatacat
1261 tgttcactcc aacacgtggt actcaattga cctagagaag ggtgaggcaa actgcacgcg
1321 tcaacacatg caggccgcca tgtactacat ccttaccaga ggatggtccg ataacggtga
1381 ccccatgttc aatcagacat gggccacctt tgcgatgaac attgccccag ccctagttgt
1441 ggactcatca tgtctgatta tgaaccttca gatcaagaca tatggtcaag gcagtgggaa
1501 tgcagccacc ttcatcaaca accatcttct tagcaccctt gtgctagacc agtggaactt
1561 gatgaagcaa cctagtccag acagcgaaga gttcaagtca attgaagaca agctgggcat
1621 caacttcaag attgagaggt ccattgatga cattaggggc aagctcagac agcttgtccc
1681 ccttgcacaa ccagggtacc tgagtggagg ggtcgaacca gagcaaccca gcccaactgt
1741 agagctggac ctactcggat ggtctgcaac ttacagcaaa gatcttggga tctatgtgcc
1801 ggtgcttgac aaggaacgct tattttgctc tgctgcgtat cccaaagggg tagagaataa
1861 aagcctcaaa tccaaggttg ggatcgagca agcatacaaa gttgtcaggt acgaggcgtt
1921 gaggttggta ggtggttgga actacccact cctgaacaaa gcttgcaaga acaatgcaag
1981 tgcagctcgg cggcatctgg aggccaaggg gttcccgctc gatgagttcc tcgccgagtg
2041 gtcagagttg tccgagttcg gagaagcttt cgaaggcttc aacatcaagc tgacagtaac
2101 accggagagc ctcgccgaac ttaacagacc agtacccccc aaacctccaa atgtcaacag
2161 accagtcaac accggtgggc taaaggcagt cagcaatgcc ctcaagaccg gtcggtatag
2221 aaatgaagcc ggactaagtg gcctcgtcct cctagccacc gcccgcagcc gactacagga
2281 cgctgtcaag gccatggcag aggccgagaa actccacaag tctaagcccg atgaccccga
2341 tgcagactgg tttgaacgat cagaaaccct gtcagacctg ctggagaaag ccgacattgc
2401 cagcaaggtc gctcactcag cactcgtgga aacaagcgac gctcttgaag cggtccagtc
2461 aacctcagtg tacaccccaa agtacccaga ggttaagaac ccacagaccg cctcccaccc
2521 cgttgttggg ctccacctgc ccgccaagag ggccaccggt gtccaggcag ctcttctcgg
2581 agcagggacg agcagaccaa tggggatgga ggccccaaca cggtccaaga acgccgtaaa
2641 aatggccaaa aggcggcaac gccaaaaaga gagccgccaa tagccatgat gggaaccatt
2701 caagaagagg acact
//
