LOCUS NC_004764 4981 bp DNA linear VRL 13-AUG-2018
DEFINITION Budgerigar fledgling disease virus - 1, complete genome.
ACCESSION NC_004764
VERSION NC_004764.2
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Budgerigar fledgling disease virus - 1
ORGANISM Budgerigar fledgling disease virus - 1
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus;
Gammapolyomavirus avis.
REFERENCE 1 (bases 1 to 4981)
AUTHORS Johne,R., Jungmann,A. and Muller,H.
TITLE Agnoprotein 1a and agnoprotein 1b of avian polyomavirus are
apoptotic inducers
JOURNAL J. Gen. Virol. 81 (PT 5), 1183-1190 (2000)
PUBMED 10769059
REFERENCE 2 (bases 1 to 4981)
AUTHORS Johne,R. and Muller,H.
TITLE Avian polymavirus in wild birds: genome analysis of isolates from
Falconiformes and Psittaciformes
JOURNAL Arch. Virol. 143 (8), 1501-1512 (1998)
PUBMED 9739329
REFERENCE 3 (bases 1 to 4981)
AUTHORS Luo,D., Muller,H., Tang,X.B. and Hobom,G.
TITLE Early and late pre-mRNA processing of budgerigar fledgling disease
virus 1: identification of viral RNA 5' and 3' ends and internal
splice junctions
JOURNAL J. Gen. Virol. 76 (PT 1), 161-166 (1995)
PUBMED 7844527
REFERENCE 4 (bases 1 to 4981)
AUTHORS Stoll,R., Luo,D., Kouwenhoven,B., Hobom,G. and Muller,H.
TITLE Molecular and biological characteristics of avian polyomaviruses:
isolates from different species of birds indicate that avian
polyomaviruses form a distinct subgenus within the polyomavirus
genus
JOURNAL J. Gen. Virol. 74 (PT 2), 229-237 (1993)
PUBMED 8381462
REFERENCE 5 (bases 1 to 4981)
AUTHORS Rott,O., Kroger,M., Muller,H. and Hobom,G.
TITLE The genome of budgerigar fledgling disease virus, an avian
polyomavirus
JOURNAL Virology 165 (1), 74-86 (1988)
PUBMED 2838972
REFERENCE 6 (bases 1 to 4981)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 7 (bases 1 to 4981)
AUTHORS Johne,R. and Muller,H.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2000) Faculty of Veterinary Medicine, University
of Leipzig, Institute of Virology, An den Tierkliniken 29, Leipzig
D-04103, Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AF241168.
On Dec 9, 2010 this sequence version replaced NC_004764.1.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4981
/organism="Budgerigar fledgling disease virus - 1"
/mol_type="genomic DNA"
/db_xref="taxon:133789"
gene 290..964
/locus_tag="BFPyV_gp1"
/db_xref="GeneID:10021535"
CDS join(290..331,408..569,634..960)
/locus_tag="BFPyV_gp1"
/codon_start=1
/product="agnoprotein 1a"
/protein_id="YP_004061424.1"
/db_xref="GeneID:10021535"
/translation="MSTPARDPNTAGTAALSPFSTPNHELRAPGPGEAHSPFTPTAAP
GSQPAGSLSDPEDGPDPTFNFYIQGHRRRPYDRQNRFGKLESEIRETKSQLETLRQEL
KHLQADVDDLKETVYAAGTSTASTSVPPSQPNSPTPTATTPEASPAAPTTESTETTGP
SVATNATEPSESRPAR"
misc_feature <655..>867
/locus_tag="BFPyV_gp1"
/note="CASP C terminal; Region: CASP_C; pfam08172"
/db_xref="CDD:400477"
CDS join(290..331,408..569,826..960)
/locus_tag="BFPyV_gp1"
/codon_start=1
/product="agnoprotein 1b"
/protein_id="YP_004061425.1"
/db_xref="GeneID:10021535"
/translation="MSTPARDPNTAGTAALSPFSTPNHELRAPGPGEAHSPFTPTAAP
GSQPAGSLSDPEDGPDPTFNFYIQPNSPTPTATTPEASPAAPTTESTETTGPSVATNA
TEPSESRPAR"
misc_feature join(435..569,826..>942)
/locus_tag="BFPyV_gp1"
/note="bifunctional 2',3'-cyclic-nucleotide
2'-phosphodiesterase/3'-nucleotidase; Region: PRK11907"
/db_xref="CDD:237019"
CDS join(379..569,826..964)
/locus_tag="BFPyV_gp1"
/codon_start=1
/product="agnoprotein 2a"
/protein_id="YP_004063432.1"
/db_xref="GeneID:10021535"
/translation="MPNGTPTLNRPLARLALRITSCAHQGLERLIRLLHLLLHLGRSL
LDLFQTLRTALTQPSTSIFSLTRLPLLLPPLRLLLLLLLPSPPRQPALASRLTQPNRP
NRGRLAK"
CDS join(379..569,634..682)
/locus_tag="BFPyV_gp1"
/codon_start=1
/product="agnoprotein 2b"
/protein_id="YP_004063433.1"
/db_xref="GeneID:10021535"
/translation="MPNGTPTLNRPLARLALRITSCAHQGLERLIRLLHLLLHLGRSL
LDLFQTLRTALTQPSTSIFRDIGAVPMTVRTASGN"
gene 977..2002
/locus_tag="BFPyV_gp2"
/db_xref="GeneID:1489499"
CDS 977..2002
/locus_tag="BFPyV_gp2"
/codon_start=1
/product="virus protein 2"
/protein_id="YP_004061426.1"
/db_xref="GeneID:1489499"
/translation="MGAIISAIAGLFELGALGGLAVDAAVNTAEIEAFIGELVLQDFS
VAEIFDAIETSGIPLANTAVPVAELQQTAATSGLIGQALSAPSLIAASVKAFAGDPVA
AGNNMALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSIWNYMTGNIGQ
AVIHQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYQTLKSYYGELPAVS
GRVEAFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTIEQQTPPGGAM
QRHANDWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTSPPSKRRYRGV
RRKVRSR"
misc_feature 980..1897
/locus_tag="BFPyV_gp2"
/note="Polyomavirus coat protein; Region: Polyoma_coat2;
pfam00761"
/db_xref="CDD:366290"
gene 1295..2002
/locus_tag="BFPyV_gp3"
/db_xref="GeneID:1489498"
CDS 1295..2002
/locus_tag="BFPyV_gp3"
/codon_start=1
/product="virus protein 3"
/protein_id="YP_004061427.1"
/db_xref="GeneID:1489498"
/translation="MALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSI
WNYMTGNIGQAVIHQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYQTLK
SYYGELPAVSGRVEAFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTI
EQQTPPGGAMQRHANDWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTS
PPSKRRYRGVRRKVRSR"
misc_feature <1295..1897
/locus_tag="BFPyV_gp3"
/note="Polyomavirus coat protein; Region: Polyoma_coat2;
cl28444"
/db_xref="CDD:391818"
gene 1899..2930
/locus_tag="BFPyV_gp4"
/db_xref="GeneID:1489497"
CDS 1899..2930
/locus_tag="BFPyV_gp4"
/codon_start=1
/product="virus protein 1"
/protein_id="YP_004061428.1"
/db_xref="GeneID:1489497"
/translation="MSQKGKGSCPRPQQVPRLLVKGGIEVLDVKSGPDSITTIEAYLQ
PRPGQKNGYSTVITVQAEGYQDAPHSTEVPCYSCARIPLPTINDDITCPTLLMWEAVS
VKTEVVGVSSILNMHSGAFRAFNGYGGGFTICGPRIHFFSVGGEPLDLQACMQNSKTV
YPAPLIGPGEGERRETAQVLDTGYKARLDKDGLYPIECWCPDPAKNENTRYYGNLTGG
PETPPVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTYVDQRGRQYWRGLPRY
FSIQLRKRNVRNPYPVSGLLNSLFNDLMPRMTGQSMQGSDAQVEEVRVYEGMEGLAPE
IDMPPKAPR"
misc_feature 1899..2909
/locus_tag="BFPyV_gp4"
/note="Major capsid protein VP1; Provisional; Region:
PHA02614"
/db_xref="CDD:222910"
gene complement(2987..4981)
/locus_tag="BFPyV_gp5"
/db_xref="GeneID:1489496"
CDS complement(join(2987..4537,4733..4981))
/locus_tag="BFPyV_gp5"
/codon_start=1
/product="large T antigen"
/protein_id="YP_004061429.1"
/db_xref="GeneID:1489496"
/translation="MASLRRLTELLCLPVTATAADIKTAYRRTALKYHPDKGGDEEKM
KELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENGTEPQTTQDDNPQDSQYST
PPKRGTTDYELPPEVDAYLLTPRSVQSCPDCHLLITSITKMPQLKAHLYEHFGIKGHM
LAHWTGIALLVLQLEKPTRISTVHNFCKKYCTISICSVRGIKKNCVHALIKTLLDVPG
LDLEECSIDMNVVDEKQFMHAMLYDYAVQIDCTDALLLLAIYKRLAQPTDKCPECQKD
KDTVKRKRSTHIDDHPRHQHNASLFLHIKDQKRLCQCAVDAVLAEKRFRSATMTRDER
LKERFRTVLRNIQELLDGETEAIDDFVTAILLFNMLFPDVDVIVDILQTMVKNPPKRR
YYIFKGPVNTGKTTVAAAILALCTGASLNVNGTPDRLQFELGCAIDQFMVLFEDVKGT
PEPDTNLPSGFGMVNLDNLRDHLEGSVPVNLERKHQNKVSQIFPPGIITMNNYVLPHT
IQARARTLVNFKHIKVYAKALRNNISVLEQRLITKPETLLAYLLIRPESEKEISADLR
AEFLTVIENLKFEVDERFFQYNNRLHEGLCVHE"
misc_feature complement(join(2990..4537,4733..4981))
/locus_tag="BFPyV_gp5"
/note="large T antigen; Provisional; Region: PHA02624"
/db_xref="CDD:222912"
gene complement(4544..4981)
/locus_tag="BFPyV_gp6"
/db_xref="GeneID:1489501"
CDS complement(4544..4981)
/locus_tag="BFPyV_gp6"
/codon_start=1
/product="small t antigen"
/protein_id="YP_004061430.1"
/db_xref="GeneID:1489501"
/translation="MASLRRLTELLCLPVTATAADIKTAYRRTALKYHPDKGGDEEKM
KELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENVSVPDIDGAFFKLMKLKKC
MQTYFSVNERRKQDIRPEYFELFKAFQDVPWKVLEDFFTSEMF"
misc_feature complement(4547..4981)
/locus_tag="BFPyV_gp6"
/note="Small T antigen; Reviewed; Region: PHA03102"
/db_xref="CDD:222986"
ORIGIN
1 ggtatagctt ttttctctgt atagtgcact ggcatgccag agcgcgattt ataaaaacaa
61 gggaagtgct gagcaatcgt tacataacat gcattccaaa taagggaatg cggaaatcca
121 tacttgggac ttacataaca tgcattccat ataaggaata cggatatgcc catgtttgta
181 tccaaacagg cggtctccca gactccgcct atcgtcccat attacgtgcc gctccataaa
241 agggaggcgt acgtgacctt tttacaggat attacgccct agcaacagga tgtctactcc
301 agcgcgagat ccaaacacgg cgggcactgc ggtaagttcc cccatttaaa ttcaaatgtt
361 tgcgcgcgaa acgtaacaat gcctaacgga acgcctaccc taaacaggcc cttagcccgt
421 ttagcactcc gaatcacgag ctgcgcgcac cagggcctgg agaggctcat tcgcctttta
481 cacctactgc tgcacctggg tcgcagcctg ctggatctct ttcagaccct gaggacggcc
541 ctgacccaac cttcaacttc tatattcagg tatgtatgac ccatagaacc cccctgtcca
601 tacgtgtatg ggtatgctta tgtaccttta cagggacatc ggcgccgtcc ctatgaccgt
661 cagaaccgct tcgggaaact agaaagcgag attcgggaaa ccaaatccca attggagacc
721 ctgcgccagg aattaaagca tctgcaggca gacgtagatg atctgaagga gacagtgtat
781 gcggcaggca ctagcacggc aagcacttct gtccctcctt cacagcctaa ctcgcctacc
841 cctactgcta ccacccctga ggcttctcct gctgctccta ctaccgagtc caccgagaca
901 accggcccta gcgtcgcgac taacgcaacc gaaccgtccg aatcgcggcc ggctcgctaa
961 gtagctgcac taaggtatgg gagctatcat ttcggctata gctggtctgt tcgaactagg
1021 agcattgggt ggcctagcag tagatgctgc cgtaaataca gcagaaatag aagcattcat
1081 aggggaattg gtactgcagg actttagcgt tgctgaaata ttcgacgcta tagaaacaag
1141 tggtatacct ttagcgaata ccgctgtacc tgttgcagag ctacagcaaa cagcagcaac
1201 ttccgggttg attggacagg cgctaagtgc cccatccctg atagcggcgt cagtcaaggc
1261 ctttgcagga gaccccgtcg cagccggcaa caatatggcc ctacaggtct ggagagacca
1321 aatggacata ctctttccag gagcggaatg gttctcgaat gctgtacata atatcaatcc
1381 attagcatgg gcccaatcgt tgtatgaaca agtaggccaa agtatatgga actatatgac
1441 aggtaacatt gggcaagctg taatacatca aatcgaggag cgtacaacag ccctgattgt
1501 gtaccaaagt aggggtatat atgatatact tgctagagcg ttagaaaccg cacgttggac
1561 attaacaaca gcggccgtag atacatatca gacactaaaa agctactatg gtgagctacc
1621 ggctgtgtcg ggcagagttg aggcctttcg taggtatcac gaggtcgcac aaggacgtag
1681 cttctttgag gactcagata tacaagatgt attagagggt aaaaaggccc aaaaacgaat
1741 tgagggccca caggagatga caggccaaac catagaacag caaacccccc caggaggtgc
1801 aatgcaacga catgcaaatg actggttact ccctttgatt ctaggtctct acggggacct
1861 gactccagag tggcggtacc agcttaagga aaggctcaat gtcccaaaaa ggaaaaggaa
1921 gctgcccacg acctcagcag gtacctcgcc tcctagtaaa aggaggtata gaggtgttag
1981 acgtaaagtc aggtccagat agtataacaa ccatagaggc ataccttcaa ccgcggcctg
2041 gacaaaaaaa tggatactcc acagtaataa cagtgcaggc agaaggatac caggatgccc
2101 cccacagcac agaggtaccg tgttacagct gtgccaggat accgctcccc acgatcaacg
2161 acgacattac gtgcccgacc ctgcttatgt gggaggctgt cagtgttaaa actgaggttg
2221 ttggagtgtc tagtattctc aacatgcatt ctggggcttt ccgcgcattt aacggatacg
2281 ggggaggctt tactatttgt ggccctagga tccatttctt tagcgtgggt ggagagcctc
2341 tcgatttaca ggcatgtatg caaaattcaa aaactgtgta ccctgcaccc ctaattgggc
2401 ctggggaagg agaacgacgt gaaacagcac aggttctcga tacgggctac aaggcccgac
2461 tagataagga tggtctctac cccattgagt gctggtgccc agaccctgct aagaatgaga
2521 acactagata ttatggcaac ctcacaggtg ggcctgagac cccccctgta cttgccttca
2581 caaacactac aacgacaatt ctccttgatg aaaatggggt tggaccccta tgcaagggcg
2641 atggcttgtt cctctcagct gcagatgtgg caggtaccta cgttgaccaa cgtggccgcc
2701 aatattggcg aggcctacca cgctatttca gtatccagct gaggaaacgt aatgttcgta
2761 acccctatcc tgtatctggt ttgctaaact ccttgttcaa tgacctgatg ccccgtatga
2821 ctggtcaaag catgcagggc tctgatgcac aggtggagga ggttcgtgtg tatgagggta
2881 tggaagggct ggctcccgag attgacatgc cccccaaagc tccccgctaa atagactaga
2941 cgcacgatgt tttatatgcc actctgttta ttgcatgtaa ataaagctat tcatgaacgc
3001 ataagccttc gtgcagtcta ttattatatt ggaagaaacg ttcgtccact tcgaacttaa
3061 ggttttcaat taccgttaga aattcggccc tgagatcggc gctgatctcc ttttcacttt
3121 cgggcctaat caataggtat gccaagaggg tttccggctt cgttattagg cgctgctcca
3181 gcacactaat gttattacgg agcgccttgg catacacttt aatatgctta aagttaacca
3241 aagtacgggc gcgtgcctgt atggtatgtg gcaatacata attattcatg gtaatgattc
3301 ctggaggaaa tatttgtgac accttatttt ggtgtttccg ttcgaggttt acgggtacac
3361 taccttcgag atgatctcgc agattatcga ggtttaccat accaaagcct gaaggcaggt
3421 ttgtgtctgg ttcaggtgta cctttaacgt cctcgaacag aaccatgaac tgatcgatag
3481 cgcatcctag ttcgaattgc agtcgatcag gggtgccatt tacattcagg gatgcccctg
3541 tacacagtgc cagtatggca gcagccacgg tggtcttacc cgtattcact ggacctttaa
3601 atatatagta tcgccgcttc ggtgggtttt tcaccattgt ctgcaatata tcaacaatca
3661 catcaacatc tggaaataac atattgaaca acagtatagc tgttacaaaa tcatcaattg
3721 cctcagtttc accatctaag agttcctgaa tgttacgtag cacagtccgg aagcgttctt
3781 tgagacgctc atcccttgtc atggtcgctg accggaaacg tttttctgca agcacagcat
3841 ccacagcaca ttggcatagg cgtttttgat ccttgatgtg cagaaatagt gaggcgttgt
3901 gctggtgtcg tgggtggtcg tcgatatgtg tcgacctctt gcgcttcacc gtgtccttgt
3961 ccttctggca ctcgggacac ttatcggtgg gctgtgctaa tcgtttatat attgcaagta
4021 acaatagggc atcggtacag tcaatttgta ctgcatagtc atataacatt gcatgcataa
4081 attgcttttc gtccacaaca ttcatatcaa tactgcattc ctccaggtcc aggcctggca
4141 catctagcag ggttttaata agagcatgaa cacaattctt tttaatacca cgtacagaac
4201 atatcgaaat ggtacagtat tttttgcaaa agttatgcac cgtcgatata cgcgtcggtt
4261 tttctagctg aagcacgagc aacgcgatcc cagtccaatg cgcaagcata tgtcccttta
4321 tcccgaagtg ctcataaagg tgggccttaa gttgcggcat tttggtaatt gaggtaataa
4381 gcaagtggca atcagggcag ctctgcacgg agcgtggggt tagtaaataa gcatctacct
4441 ctgggggtag ctcatagtcg gtggtacccc tttttggggg tgtgctatac tgactatcct
4501 gagggttgtc atcctgagtt gtttgaggtt cggtgccctg taattagaac atttcacttg
4561 taaaaaagtc ctccagtacc ttccatggta catcttggaa ggccttaaac agctcgaaat
4621 attcaggcct tatatcctgt ttgcgtctct cgttaacgct aaaataggtt tgcatgcact
4681 ttttcagttt catgagttta aagaaggccc catcgatatc gggtacactt acattctcga
4741 aggtagcata gccgctctct tcaggttcgg gatcggagtc ctctagggtc tcatctgcac
4801 gtaggccttc ggtctcacgg aattcctcca tgagggtatt caattccttc atcttttcct
4861 catcccctcc tttgtcggga tggtacttca gtgccgtgcg acgataggca gtcttgatat
4921 ctgcagccgt tgcggttaca ggtaggcaca ggagctcggt caatctgcgc aaagaagcca
4981 t
//
