LOCUS NC_005096 3929 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Tobacco ringspot virus RNA 2, complete sequence.
ACCESSION NC_005096
VERSION NC_005096.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Tobacco ringspot virus
ORGANISM Tobacco ringspot virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
nicotianae.
REFERENCE 1 (bases 1 to 3929)
AUTHORS Moon,J.S., Domier,L.L. and Hartman,G.L.
TITLE Nucleotide sequence of Tobacco ringspot virus RNA2
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3929)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3929)
AUTHORS Moon,J.S., Domier,L.L. and Hartman,G.L.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2003) ARS, USDA, 1102 S. Goodwin Ave., Urbana, IL
61801, USA
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AY363727.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3929
/organism="Tobacco ringspot virus"
/mol_type="genomic RNA"
/db_xref="taxon:12282"
/segment="RNA 2"
gene 123..3428
/locus_tag="TRSVs2gp1"
/db_xref="GeneID:2943106"
CDS 123..3428
/locus_tag="TRSVs2gp1"
/note="Mature peptide cleavage sites predicted by Dr. Mike
Adams"
/codon_start=1
/product="polyprotein"
/protein_id="NP_919039.1"
/db_xref="GeneID:2943106"
/translation="MEPLLWHVDATTPSHIQALQSGSLPPASPAAALTRVQRALSFFR
TAARKYCKQADAPDLFALAMTRVAEHNDIAVDARNVEQLFHFVGQHVANTAERKALRA
ALREQRALFKASLPGACFPAPAPPGWGIPKPPPLPPPFVWKGCRYNVVAPPPRIPQPP
PLPKFAPFVRNNFRVVAPPPLGEVYQPVGAPFPQTRASAALSFFRTASTCRQVLVESC
IQQPAFMTCCASTGEVQEMTSMLTEARQTGKILTPKEVSQALAQKRKEIKGAEENRIS
FDEGVHLTEADVFHRLSLAKRFMAHKRDRTLVDVLMPTEHEVVRYPGTRPDGTLQMCV
SALPRMSEEAARKLLEKGWKNSKNVSLDIGVTSYMPYGAPIVAFMTIMDGRTDDPQEA
ALCANYMDLGREKSKVLSLPLVTIPLSEIEHDQGILDCLYIVTYFHGVQSYQPGTLMM
SYGTLEFQEYSNNSFTTATRVRESWDQILKRNENLGKRVHAGIGVLGTIEKEMDQQLE
DFPAINLETRPRPVVRTFQNAHQPLHKTRSMRIGTTSFTGNTGRTVLPPVVKTYEEGN
ANFDSLQSKPRHSSASTAHLMCAVTVVPDPTCCGTLSFKVPKDAKKGKHLGTFDIRQA
IMEYGGLHSQEWCAKGIVNPTFTVRMHAPRNAFAGLSIACTFDDYKRIDLPALGNECP
PSEMFELPTKVFMLKDADVHEWQFNYGELTGHGLCNWANVVTQPTLYFFVASTNQVTM
AADWQCIVTMHVDMGPVIDRFELVPTMTWPIQLGDTFAIDRYYEAKEIKLDGSTSMLS
ISYNFGGPVKHSKKHAISYSRAVMSRNLGWSGTISGSVKSVSSLFCTASFVIFPWEHE
APPTLRQVLWGPHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHV
GSYEFIVHIDTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFA
SKDATVTLASNPLSWLVAATGWHYGEVDLCISWPRSKQAQAQEGSVSITTNYRDWGAY
WQGQARIYDLRRTEAEIPIFLGSYAGATPSGALGKQNYVRISIVNAKDIVALRVCLRP
KSIKFWGRSATLF"
mat_peptide 123..806
/locus_tag="TRSVs2gp1"
/product="hypothetical peptide"
/protein_id="YP_053926.1"
mat_peptide 807..1886
/locus_tag="TRSVs2gp1"
/product="movement protein"
/protein_id="YP_053927.1"
mat_peptide 1887..3425
/locus_tag="TRSVs2gp1"
/product="capsid protein"
/protein_id="YP_053928.1"
misc_feature 1914..2189
/locus_tag="TRSVs2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 2415..2912
/locus_tag="TRSVs2gp1"
/note="Nepovirus coat protein, central domain; Region:
Nepo_coat; pfam03391"
/db_xref="CDD:397456"
misc_feature 2943..3413
/locus_tag="TRSVs2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
ORIGIN
1 ttgaaaattc tctcacaggg ttccggttac gttgttcttt tactctcttt ttattttaat
61 tgttcaaaat tgcgattctg aagcttccta ctttctggtg cccgcatttt ctctctgctc
121 cgatggagcc cctcttatgg cacgttgatg ccaccactcc ttcccacatc caggctctcc
181 agtcagggtc tctccctcct gcttctccgg ccgcggctct cacccgcgtc caacgcgccc
241 tttccttctt ccggactgct gcccggaagt actgcaagca ggccgatgcg cctgacttgt
301 ttgccctggc aatgaccagg gttgctgagc acaacgacat tgccgttgat gcaagaaatg
361 tggaacagct gttccacttt gttggccaac atgtggccaa cactgctgag cgcaaggcgc
421 tccgggctgc tcttcgtgag cagcgggctt tatttaaggc atccctgccc ggtgcctgtt
481 ttcctgctcc agctcctcca ggctggggta ttccaaaacc cccccctctt cctccacctt
541 ttgtgtggaa aggatgccgc tacaatgtgg tggcccctcc tccacgcatc ccgcaaccac
601 ctccactgcc taaatttgcg ccttttgtgc gcaacaactt tagagtggtt gctccccctc
661 cccttggtga ggtgtaccaa cccgttggtg cacctttccc acagacccgg gcctccgcgg
721 ccctctcctt ctttcgcact gcctccacct gcaggcaggt cttggttgag agctgcattc
781 agcagcccgc cttcatgact tgctgtgctt ctaccgggga agtgcaagaa atgacgagca
841 tgcttactga agctcgtcag actggaaaaa tcctgactcc caaagaggtg agtcaggcct
901 tggcccaaaa acgcaaagaa atcaaagggg ctgaggaaaa tcgcatctcc tttgatgaag
961 gggtgcattt gacagaggcg gatgtcttcc atcgtctcag tcttgcgaag cgcttcatgg
1021 cgcataagcg agaccggact ttggtggacg ttttaatgcc tactgaacat gaagttgttc
1081 ggtatccagg cacccgccct gacgggacat tgcagatgtg cgtgtctgcc cttccacgca
1141 tgtctgagga agcagctagg aagctgcttg agaaggggtg gaagaactcc aaaaacgtct
1201 ctctagacat tggggttact tcctatatgc catatggtgc gcccatagtt gcattcatga
1261 ctattatgga tgggcgtacc gatgatccac aagaggcagc actttgtgcg aattacatgg
1321 accttggtcg agaaaagtcc aaggtgttgt ctcttccact tgttaccatt cccctctctg
1381 agattgaaca tgatcaaggc attttggatt gcctttatat tgttacatat tttcatggtg
1441 ttcaatctta tcaacccgga actttaatga tgagttatgg aactcttgag tttcaagaat
1501 attccaataa ctcttttaca actgctactc gggttagaga gagttgggac cagattctca
1561 aacgcaatga gaatcttggg aaaagagtcc atgccggcat cggggtgctt ggcactattg
1621 aaaaagaaat ggaccagcaa cttgaggact tccccgccat aaatctggaa actaggccac
1681 ggcctgttgt gcgaactttt cagaatgcac atcagccgtt gcataagacc agatctatgc
1741 gaattggcac tacctctttt actgggaaca ctggtaggac tgtactccca ccagtggtta
1801 aaacctatga agagggaaat gctaattttg attccctaca atccaaacca cgtcacagct
1861 ctgccagcac tgctcatttg atgtgtgctg tgacggttgt tcccgatccc acttgttgtg
1921 ggacattgtc ctttaaggtt cccaaagatg cgaagaaagg aaagcatctt ggaacttttg
1981 acattcggca agccattatg gaatatggtg gtttgcattc ccaagaatgg tgtgcaaagg
2041 gcattgttaa tcccactttt acagtgagga tgcatgcccc acgcaacgcc tttgcaggtt
2101 tgtctatagc gtgcaccttt gatgattaca aacgcataga cttaccagcg cttgggaatg
2161 aatgtcctcc ctccgagatg tttgaactgc ctaccaaggt tttcatgctt aaagatgcag
2221 atgtgcatga atggcagttc aactatgggg aacttacagg acatgggttg tgcaattggg
2281 caaatgtagt tacccagccc acattgtact tttttgttgc gtccacaaat caagtgacga
2341 tggctgctga ttggcagtgt attgttacta tgcatgtgga catggggccc gtcattgatc
2401 gttttgagtt agttccaact atgacgtggc ctattcaatt gggtgacact ttcgccattg
2461 atagatatta tgaggcgaaa gaaattaaac ttgacgggtc aacctccatg ttgtccatat
2521 cttataattt tggaggtccc gtcaagcatt ctaagaaaca tgccatttca tattcccggg
2581 cagttatgtc taggaatctt gggtggtctg gcactataag cggaagtgtc aagagtgttt
2641 cttctttatt ttgtaccgct tcttttgtta tttttccatg ggaacatgaa gcacctccaa
2701 ccttacgtca ggtgttatgg ggcccacatc agataatgca cggagatggc caatttgaaa
2761 ttgctatcaa aactcgtctt cattcagctg ctacaactga agaagggttt ggtagacttg
2821 gtatactccc gctttctggg cctatagctc ctgatgcaca tgttggatcg tacgagttta
2881 ttgtacatat agacacttgg cgacccgact ctcaggtgca tcctcccatg ttttctagtg
2941 cggagcttta taattggttc actttaacca atttgaaacc agatgcgaac actggcgtag
3001 tcaactttga tattcccgga tacatccatg acttcgcctc taaggacgca actgtgacgc
3061 tcgcatcaaa tcccctctct tggcttgtcg cagctactgg ctggcattat ggtgaggtgg
3121 atctctgcat ctcctggcca aggtccaaac aggcccaggc tcaggagggt agtgtttcca
3181 ttaccactaa ttatagagat tggggtgctt actggcaagg ccaggcccgg atttatgatt
3241 tgcggcgtac tgaagcggaa attcccatct tcttgggttc ttacgctggt gcgacgccat
3301 ctggtgcctt gggtaagcaa aactatgtcc ggatttcaat tgtcaatgct aaggacatag
3361 ttgcactgcg agtgtgtttg cgacccaaat ctataaagtt ttggggtcgc tccgccactt
3421 tgttttaaat gcctttagtt aggtgttttg tccttttgat tcttcaaacc aggattggta
3481 gcccttttgg cattcatttg ctggaaacca tgctgtacat ggttggttag ataaaagcgt
3541 caataaaccg ggactttaat tagtcccgtt ttaggttcct gcccttacta gggtggtccg
3601 gtccttaggt ggatcgggaa gctgtataaa ctcagctttt tgggggtgag agcccaagaa
3661 tgtctgtctg tcagctgctt gtgtaaatga gctttctccc aggatagctc tcctgggcac
3721 aagtgaaaac tactgtcgtg gcgagttagt agccagacga ccggagtaaa atctctagtt
3781 aacaaaatgt gttagaccgt tgtttctggc agctttgttg ggtctgttgg gttttctaaa
3841 gctgctttgc tatttgctgt tgtttgagcc cactgttcat atttggtttg gggcctttta
3901 tgtttcgtag tgtcgtgttt gtccccccc
//
