LOCUS NC_005132 6966 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Botrytis virus X, complete genome.
ACCESSION NC_005132
VERSION NC_005132.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Botrytis virus X
ORGANISM Botrytis virus X
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Tymovirales; Alphaflexiviridae; Botrexvirus.
REFERENCE 1 (bases 1 to 6966)
AUTHORS Howitt,R.L., Beever,R.E., Pearson,M.N. and Forster,R.L.
TITLE Genome characterization of a flexuous rod-shaped mycovirus,
Botrytis virus X, reveals high amino acid identity to genes from
plant 'potex-like' viruses
JOURNAL Arch. Virol. 151 (3), 563-579 (2006)
PUBMED 16172841
REFERENCE 2 (bases 1 to 6966)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6966)
AUTHORS Howitt,R.L., Beever,R.E., Pearson,M.N. and Forster,R.L.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2001) HortResearch, 120 Mt Albert Rd, Mt Albert,
Auckland, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AY055762.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6966
/organism="Botrytis virus X"
/mol_type="genomic RNA"
/host="Botrytis cinerea"
/db_xref="taxon:174142"
gene 96..4337
/locus_tag="BVXgp1"
/db_xref="GeneID:2943228"
CDS 96..4337
/locus_tag="BVXgp1"
/codon_start=1
/product="158kDa replicase"
/protein_id="NP_932306.1"
/db_xref="GeneID:2943228"
/translation="MSALRSLASDLSDPTTKAAANEIAFKHFSDGIKSTKLSFPYKVD
ESTAILLEKEGVLTNPFSTTLHTHAAEKMLENRTLNEVGKKLKVHTGPFTFIQFKTGK
LGHVGRGHNQGDQIINYAREAKDLSRFETLDTAVVPPVHNRVALLHDTLHFLSPRQLA
QLFHHNPNLHLLYATLVLPVEALHNLPSLNPHAYTLEYFSNGDFAYMPGGHAGSGYYH
SAETLHWLRAGQIKLGHFSLSLNKEDSFGAHHIFTVTRQFIPPAPRYLYAETELVTLH
DIFYPADSNVQRPYPATLINRMELYCRSVKAVSLRDIFAKFRQVTETAQLRHMRISDV
IRLANYFLFSASLSGTNDYPSLVGHGLFKKMRVSFQERVKEVLAPLVGHTQYRTLMSF
VQPKPFTFSLTPVTFHAAQGRKWSNPLGPMDPPPPGPAGPDEPSDPLIGPTLSLLALG
IPDDDLDADLDKIAKRNTRKDELLAELTQTPTKVEVPPAPEDAAGPQNPTTTTPTAAD
PPTTPADEPTPEAPKHHPTLTAVDIQLLNDLRFTDLDIQHGIDGPILPLHRNPAELTP
TLIADINCAPFVEMLSARHIPIISRPVNNARAHALASDVKNAKIGKLLTKQPQDWLKS
WDARCSTSELQLNVAVIHGAGGSGKSYSIQETLRNKRETLEHTTIVTPTVELRNDWSG
KIPRMAPDRIKTYEKAMLQPGTATVILDDYGKLPPGYLDSYAVLHPNVELFILTGDHR
QTTYHVSDPEANTFHLTSEIQEFRPLCAYYINATHRQPRRLANVLGTHSSKTSGGAVL
EADMIPDDATVLVPSRVEQAKLIDLNRRAMTYAGCQGLTAKNVTIVLDRDTPLCTDET
MYTALSRASESITFVNTYSKEPGFLAKLDCAPYLKTMLTGVHEEEYQPDDTPANDNPT
EPELTKTHLPVENDNVFFEPLVEQCTDKDTRELFTAEHGKTNLAQTSSLEVQLFPHQQ
AKDDALMTETMKARITTSTRDANLRELHDTNALSGLLFEFYADFMKVPKDPMPFNPTL
WAESRARAERTYLSKTAAQILNGANRQDPDFPDNFVALFLKSQWVKKLEKVGMQFKAG
QTISSFKQQVVLLTTTLALYLRACRNSHQPDNVFIMCEKTSNQFNDFVKDWNFERDNY
TSDYTQYDKSQDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGE
GPTFDANTECNIAYDAARFQLSDVKACYAGDDLARDRNCPERASWKYISHQFTLQAKP
LVTRKPDFCGWSLTKHGIVKNPKQLWQSMQLGLKLDKLKDIVPSYSLDFHHAYALGDK
VYDIFTEEEMAYHQATVRLMHKMGVHPKIAGDHLPVFHITSDRLLKETKPIPALVPTI
SITPPATPPPEAEVELTTFTTHIPDSRPIRNVHFD"
misc_feature 210..1064
/locus_tag="BVXgp1"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature 2013..2711
/locus_tag="BVXgp1"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
misc_feature 3252..4109
/locus_tag="BVXgp1"
/note="catalytic core domain of RNA-dependent RNA
polymerase (RdRp) in the family Alphaflexiviridae of
positive-sense single-stranded RNA (+ssRNA) viruses, in
the order Tymovirales; Region: Alphaflexiviridae_RdRp;
cd23246"
/db_xref="CDD:438096"
misc_feature 3525..3569
/locus_tag="BVXgp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438096"
misc_feature 3693..3764
/locus_tag="BVXgp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438096"
misc_feature 3777..3821
/locus_tag="BVXgp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438096"
gene 4355..5191
/locus_tag="BVXgp2"
/db_xref="GeneID:2943232"
CDS 4355..5191
/locus_tag="BVXgp2"
/codon_start=1
/product="30kDa protein"
/protein_id="NP_932308.1"
/db_xref="GeneID:2943232"
/translation="MSVTPDPTVGQALHPFSVPPTPAELDHIAAFYNVHPTPPLIGFS
LIGSVNIRPGGTSQRLTGIFDATPNSLPDAVASLSAHNFHHLLDWHHSIDPAHIAAAP
HPHTPAIKAALQRLTLIPNVIIYAPPTPSPPPPPAPTQPTRPTPGPAFFPQPFKVELH
HPTPKTSSLPAPSLPTSLPPIITNQYLRLQISTPTGARQTYLRALIPKSPDLTDFILR
IDLTEYHAHLIFTAELTRDHSITLARGPYVWPTFLPPSINNLIKLTHAAAEPSLQLTE
IS"
misc_feature 4472..>4699
/locus_tag="BVXgp2"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl21454"
/db_xref="CDD:451247"
gene 5198..6400
/locus_tag="BVXgp3"
/db_xref="GeneID:2943230"
CDS 5198..6400
/locus_tag="BVXgp3"
/codon_start=1
/product="coat protein"
/protein_id="NP_932309.1"
/db_xref="GeneID:2943230"
/translation="MDPNLDQDTLPTHEEIDNDVDSAEEEPPEPPLLPDDIDDDDSHG
SRTRRQVKPPPELLRAVGACLISGHYDGGNYFRWQQSIAALYAKAGYAGDIRFHQAAI
QEYALDPVLPAPRVSYDLLVAHAGLRYQALLNEQLRTGKTPPADEALKDAVRKAAQAA
YDNAVKTGDYTPLIDIAFKGVDINKHASDVAQLAKMSVTMDGTHIKFTAGEMPKDKVI
TSNSMASPNTVMNILNLITTSANVTAVTCGIEFAIACAHQGSSRYTRHTGTSTGGSTF
ELIAAHVKEHCTIRQFCSYFAKVVWNHLLTHATPPVNWAKHGFTLDSRYAAFDFFDAV
TNAAALPPKNGLIRAPTSEEIRAHNLNAHLLINASRQDDQVSSSAQYTAAIAQAGGFK
RPQIGWGE"
misc_feature 5855..6259
/locus_tag="BVXgp3"
/note="Viral coat protein; Region: Flexi_CP; pfam00286"
/db_xref="CDD:425583"
misc_feature 5831..6400
/locus_tag="BVXgp3"
/note="alternative start codon; contains shortened coat
protein"
gene 6279..6677
/locus_tag="BVXgp4"
/db_xref="GeneID:2943229"
CDS 6279..6677
/locus_tag="BVXgp4"
/codon_start=1
/product="14kDa protein"
/protein_id="NP_932310.1"
/db_xref="GeneID:2943229"
/translation="MPTYSSMLHAKMIKSPAALNTPQPSPKQAVSNAHRLDGGSSYVV
SLSEISSCPTSTTNSLFAAATPSTLLLSALYCTPPSQLRMKSSCTLTLFIPPLNTAAS
PTLPDTSCHGEWNTTTRPCLAASTALMYSL"
gene 6431..6817
/locus_tag="BVXgp5"
/db_xref="GeneID:2943231"
CDS 6431..6817
/locus_tag="BVXgp5"
/codon_start=1
/product="14kDa protein"
/protein_id="NP_932311.1"
/db_xref="GeneID:2943231"
/translation="MSDFNDELVIRCGDTVYSPIVCSVLHPTISAKDEIVMHVDVIHS
PPKYRGFANSTRHIMPWRMEHNHKTMSSGLHCTDVLAVEKEALPGAIATFFSSLKTPI
NITFPDKVHVTREPLKPNDNAHIDEA"
ORIGIN
1 gaaaaccaca tcgcaaatcc ccgcaccagc catagccaca agccagtatt ctgccacgcc
61 ccaccccacg gaggctgtcc ttttaccttg tcgctatgtc tgcactccgc tctctcgcct
121 ctgacttgtc agaccccaca acaaaagccg ctgccaacga aatagctttc aaacacttct
181 ccgacggtat caaatccact aaattatcct tcccctacaa agtcgacgaa tccactgcca
241 tcctcctgga gaaagaaggc gtactcacca acccattctc caccaccctt catacgcatg
301 ccgctgagaa gatgctggaa aatcgcaccc tcaatgaagt tggaaagaaa ctgaaagtgc
361 acacgggacc cttcacgttc atccagttca aaacgggcaa gctcggacac gtcggcagag
421 gccacaacca aggagaccaa atcattaact acgcacgcga ggccaaggac ctctcccgat
481 ttgaaaccct tgacacagcc gtcgtccccc ccgttcataa cagagtggcg ctccttcacg
541 acacccttca ctttctcagc ccaaggcaac tcgctcaact cttccaccac aacccaaacc
601 tccacctact ctatgcgacc ctggttctcc ccgtggaagc cctccacaat ctcccttccc
661 ttaaccccca cgcctacacg ctcgaatact tcagcaatgg cgacttcgct tacatgcccg
721 gaggtcacgc tggctcagga tactaccaca gcgctgaaac cctccattgg cttcgggcag
781 gccagatcaa gttaggccac ttctcccttt ctctcaacaa ggaagacagc ttcggagccc
841 accatatatt cactgtcaca agacagttca ttccccccgc cccccgctac ctctacgctg
901 aaaccgaact ggtcaccctg cacgacatct tttaccccgc cgactctaac gttcagcggc
961 cctaccctgc aacgttgatc aatcgcatgg aactctactg ccgctcagtc aaagccgtct
1021 cacttaggga catattcgca aaatttcgcc aggtcaccga aaccgcccaa ttaagacata
1081 tgcgcatctc tgacgtcata cgactagcca actatttcct tttcagcgcc tccctctccg
1141 gcaccaacga ctacccctca cttgttggcc acggactctt caagaagatg agggtctcct
1201 ttcaagaacg agtcaaggaa gtcctcgccc ccctcgtagg acatacacaa tatcgaaccc
1261 tcatgtcctt cgttcagccc aaacccttca ccttcagcct cacccctgtc actttccacg
1321 cagctcaagg gaggaaatgg agcaacccac tgggcccaat ggacccacca ccaccaggac
1381 ccgcaggccc tgatgaacct tccgaccctt tgatcggccc caccctctct ctccttgctc
1441 ttggaatacc cgacgacgac ctcgacgcag atctcgacaa aatcgccaaa cgcaacaccc
1501 ggaaagacga actcctcgct gagctcactc agacacccac caaggtggaa gtcccacccg
1561 cacccgagga cgccgctggg ccccagaacc ccaccaccac cacaccgacg gccgccgacc
1621 ctcctaccac acctgcggac gaacccacgc cggaggcgcc caaacaccac cccacactca
1681 ccgccgtcga catacaactt ctcaacgatc tccgcttcac ggatctcgac atccagcacg
1741 gcatagatgg acccatcctt cccttgcatc gcaaccccgc cgaactaaca ccgacgctca
1801 tcgccgacat taactgcgcc cccttcgtcg agatgctctc tgcgcgccat atcccaatca
1861 tctcaagacc ggtcaacaac gcacgagccc acgcactcgc ttcggacgtc aagaacgcaa
1921 agataggcaa actcctcact aagcaacccc aggactggct caaatcttgg gatgcccgtt
1981 gctccacctc agaactacaa ctcaacgtcg ccgtcatcca cggtgccggc ggcagcggca
2041 agtcctactc tattcaggag acgctacgca ataaaagaga aacgcttgag cacaccacca
2101 tcgtaacacc caccgtcgag ttgcgaaacg actggtctgg caagatcccc cgcatggctc
2161 cagaccgcat caagacctat gaaaaagcta tgctccaacc aggcaccgcc actgtcatac
2221 tggacgacta tggcaaactg ccacctggat acctcgactc ctacgccgtt ctccacccga
2281 acgtcgagct attcatactc acaggagacc acagacaaac cacctaccac gtctccgacc
2341 cagaagccaa cacattccat ctcacttccg agatccagga attccgaccc ctctgcgcct
2401 actatattaa cgccactcac cgacaacccc gtcgcctcgc caatgtactt ggtactcact
2461 catccaaaac ctcaggtgga gccgtgctag aggcagacat gattccagac gacgccaccg
2521 tccttgtgcc ttcaagagta gagcaggcca agcttataga cctcaacaga cgcgccatga
2581 catacgcagg gtgtcaagga ctaacagcca agaacgtcac catcgtccta gaccgagaca
2641 cccccctctg cacggatgaa accatgtaca ccgctctctc tcgggcgtct gaaagcatca
2701 ccttcgtcaa cacctactcc aaggaaccag gattcctcgc caagctggac tgcgccccat
2761 acctcaaaac tatgctcact ggagtgcacg aagaagagta ccaaccagac gacactcccg
2821 ccaacgacaa ccccacagag ccagagctca cgaaaactca ccttcccgtt gagaacgaca
2881 acgtcttctt cgaacccttg gtcgaacaat gcactgataa agacacccgt gagctcttca
2941 ccgccgaaca cggcaaaact aacctcgcgc aaaccagctc acttgaggta caactctttc
3001 cccaccaaca agccaaggat gacgccctca tgacggagac gatgaaggcc cgcatcacga
3061 ccagcacccg cgacgccaac ctacgcgagt tgcacgacac caacgcactt tccggtctgc
3121 tcttcgaatt ctacgctgat ttcatgaaag tcccaaaaga ccccatgccc tttaacccca
3181 ccctctgggc tgaaagtcgc gcccgcgctg aacgcaccta cctcagcaag acagccgctc
3241 aaatcctcaa cggtgccaat agacaggacc ccgacttccc tgacaacttc gtggccctct
3301 tcctcaagag tcaatgggtt aagaaacttg aaaaagtggg tatgcaattc aaagccgggc
3361 agacaatatc gtccttcaaa cagcaagtcg tgctgctcac cactacgctc gccttgtacc
3421 tcagagcctg ccgcaactcg catcaaccag acaacgtctt cataatgtgc gagaaaactt
3481 ccaaccaatt caatgatttc gtcaaggact ggaactttga acgcgacaat tacacgagcg
3541 attacacaca atacgacaaa tctcaagacg gacttttcct caactttgag ctgcgcaaag
3601 ccagacactt cggcgtccca caagctgtcc tagacgccta cacagccatc aaaacggacg
3661 ccaaagtctt tgccgacacc ctcaaaataa tgcgactaag cggggaagga cccaccttcg
3721 acgccaacac tgagtgcaac atcgcttacg acgcagcccg ctttcaactt tctgacgtca
3781 aggcctgcta cgctggagat gacctcgcac gcgaccgcaa ctgccccgag cgcgcttctt
3841 ggaaatacat cagccaccaa ttcacactcc aggccaaacc actcgtcact cgcaaacccg
3901 atttctgcgg ctggtcgctc acaaaacacg gaatcgtcaa gaacccaaaa caactctggc
3961 agtccatgca actgggactt aaactcgaca agctcaaaga catcgtcccc tcttactcac
4021 ttgacttcca ccacgcctac gcactcggag acaaagtcta tgacatcttc actgaagagg
4081 aaatggccta ccaccaagcc accgtgcgcc tcatgcacaa gatgggagtc cacccaaaaa
4141 tcgccggaga ccacctacca gtcttccaca tcacttccga ccgcctgctc aaggaaacga
4201 agccaatacc agcccttgtg ccgacaattt ctataacccc gcccgccacg ccacccccgg
4261 aggcagaagt ggaactcaca accttcacca ctcacattcc agattctaga cctattagga
4321 atgtgcattt tgattaagtt tgtggttctt tgaaatgtcc gtcacgcctg atccgacagt
4381 aggacaagct ttacacccct tctccgtccc tcccaccccc gccgaactcg atcacatcgc
4441 tgctttctac aacgttcacc ccaccccacc tctcattgga ttcagcctca ttggaagtgt
4501 caatatccga cctggcggca cgtcgcaacg cctcactggc attttcgacg ccacaccaaa
4561 ctccctgccc gacgctgttg cctcgctctc tgcccacaat ttccaccacc tccttgactg
4621 gcaccactcc attgaccctg cccacatcgc cgctgcaccg catccacata cccctgccat
4681 taaagcagcc ctccaacgct tgacgctcat cccgaacgtc atcatctacg ctccccccac
4741 ccccagccct ccccccccac cggcacccac ccagcccact cgacctaccc cgggacccgc
4801 attctttccc caacccttca aggttgagtt acaccatccc acccctaaaa cctcctcact
4861 acccgcacct tccctaccca cctctcttcc tcccatcatc accaaccagt atctccgtct
4921 ccaaatttcc acccccactg gagcacgaca gacttatctc agagccctaa tcccaaagtc
4981 ccctgatctt acagacttca tcctcaggat agacctcact gaatatcacg cacacctcat
5041 attcaccgcc gaactcacgc gcgaccattc catcactctc gcaagaggtc cctacgtttg
5101 gcccactttc ctgccccctt ccatcaacaa cctcattaaa ctcacacacg ctgctgctga
5161 accttcactt caactaactg agattagtta agttgttatg gatccgaatt tagatcagga
5221 caccctccca actcacgaag aaattgacaa cgacgtcgac tccgccgaag aagaaccacc
5281 tgagcccccc ctactccccg acgatataga cgacgacgat tcccacggat ctcgcacccg
5341 gcgccaggta aagcctccac ctgaacttct ccgcgccgta ggagcttgcc tcatcagcgg
5401 acactacgac ggagggaact acttccgttg gcagcaaagc atcgcagcac tctacgccaa
5461 ggcaggatac gccggcgaca tccgattcca tcaagccgca atccaggaat acgcactcga
5521 ccccgtactc ccagccccgc gcgttagcta cgatctccta gtcgcccacg caggtctccg
5581 ctaccaagcc ctgctcaacg aacaactacg tacaggaaaa accccccccg ccgacgaagc
5641 cctcaaagac gccgtacgca aagctgccca ggccgcatac gacaacgccg tcaagacagg
5701 tgattacacc cccctcatcg acatagcatt caaaggagtt gacatcaaca aacacgcgtc
5761 agacgtcgcg caactcgcca agatgagtgt cacaatggat ggaacgcata tcaaattcac
5821 cgccggagaa atgcccaagg ataaagtcat caccagcaat tcgatggcca gcccaaacac
5881 cgtcatgaac atcctcaacc tcatcaccac tagcgccaat gtcaccgccg tcacctgtgg
5941 aattgagttc gcaatcgcct gcgctcacca aggctcctcc cgatacaccc gtcacacggg
6001 cacgtccaca ggaggatcga cattcgaact catcgccgcc cacgtcaagg aacactgcac
6061 catcagacag ttctgctcct acttcgctaa agtcgtctgg aaccaccttc tgacccacgc
6121 aacacccccg gtcaactggg ccaaacacgg cttcactctg gacagtcgct acgccgcatt
6181 tgacttcttt gacgctgtca ccaacgccgc cgccctacca cccaagaatg gactcattcg
6241 cgcccccacc tctgaggaaa ttcgcgctca caatctgaat gcccacttac tcatcaatgc
6301 ttcacgccaa gatgatcaag tctccagcag cgctcaatac accgcagcca tcgcccaagc
6361 aggcggtttc aaacgcccac agattggatg gggggagtag ttatgttgtt tctttatctg
6421 aaatatcatc atgtccgact tcaacgacga actcgttatt cgctgcggcg acaccgtcta
6481 ctctcctatt gtctgctctg tattgcaccc caccatctca gctaaggatg aaatcgtcat
6541 gcacgttgac gttattcatt ccccccctaa ataccgcggc ttcgccaact ctacccgaca
6601 catcatgcca tggagaatgg aacacaacca caagaccatg tctagcggcc tccactgcac
6661 tgatgtactc gctgtagaaa aggaggcctt accaggcgca attgctactt tctttagctc
6721 tcttaaaaca cctatcaata ttaccttccc agacaaggtt catgttaccc gcgaaccttt
6781 gaaacccaat gacaatgccc atattgatga ggcttaattt atttctttac ttattttctc
6841 ttttggagtt catttcgagg ggctagctta gcctagtcat gtgtttgccc tcacaccatc
6901 cgaccaaagt acaggtcaat tccgcacgcc tatcttaaca ggctatggat ttttgtccca
6961 tgcgac
//
