LOCUS NC_006056 3820 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Arabis mosaic virus RNA 2, complete sequence.
ACCESSION NC_006056
VERSION NC_006056.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Arabis mosaic virus
ORGANISM Arabis mosaic virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
arabis.
REFERENCE 1 (bases 1 to 3820)
AUTHORS Wetzel,T., Meunier,L., Jaeger,U., Reustle,G.M. and Krczal,G.
TITLE Complete nucleotide sequences of the RNAs 2 of German isolates of
grapevine fanleaf and Arabis mosaic nepoviruses
JOURNAL Virus Res. 75 (2), 139-145 (2001)
PUBMED 11325468
REFERENCE 2 (bases 1 to 3820)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3820)
AUTHORS Wetzel,T., Meunier,L., Jaeger,U., Reustle,G. and Krczal,G.
TITLE Direct Submission
JOURNAL Submitted (08-JAN-2001) Staatliche Lehr und Forschungsanstalt,
Centrum Gruene Gentechnik, Breitenweg 71, Neustadt an der
Weinstrasse 67435, Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AY017339.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3820
/organism="Arabis mosaic virus"
/mol_type="genomic RNA"
/isolate="NW"
/host="grapevine cultivar Pinot gris"
/db_xref="taxon:12271"
/segment="RNA 2"
/note="Neustadt an der Weinstrasse"
gene 296..3628
/locus_tag="ArMVs2gp1"
/db_xref="GeneID:2943103"
CDS 296..3628
/locus_tag="ArMVs2gp1"
/codon_start=1
/product="polyprotein P2"
/protein_id="YP_053924.1"
/db_xref="GeneID:2943103"
/translation="MAKFYYSDRRLACWAAGKNPHLGGSIESWLAAIKSDSSFRQTVK
EDVQVNRLQPTAVRMFSWKVGSGPIDNPEKCNWHYVLTGEVPAQPTEPVKAREVVVPP
VKVIPSPPPVPRPYFRPVGAFAPTRSGFIRATVERLSRKREESRAAALFAELPLEYPQ
GAPLVVPRGFAAMRWTYHATWRRWYDASDERALRVHPGGPALPPPPPPPPIQKPPSFE
ERLQAALERQSCARAFALETSLGLNMAWLGTAAIPSTSVCCADGRTTGGQTIAQEADP
INHRVTSNTAPGRAQWISERRSALRRREQANSLQSLAAQTDMTFEQARNAYLGAADMV
EQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGQNTLEILYNPVADEEMD
EYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNG
LARAIFFPGLQYSQEEPRRESIIRLYVASTNATVDADSILAAISVGTLRQHIGSLHNR
TVASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTGTPEANVQIGSGSSMRMVGPLAW
ENVEEPGQTFTIRNRSRSMRVDRNADVGVALPRMSTTTRGLAGRGSVQVPKDCQAGRY
LKTLDLRDMVSGFSGIQYEKWITAGLVMPDFKVVIRYPANAFTGITWVMSFDAYNRIT
SSITTTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGHAMWFNATTFESPKLHFTCL
TGNNKELAADWEFVVELYAEFEAAKTFLGRPNFVYSADAFNGSFKFLTIPPLEYDLST
TSAYKSVSLLLGQTLIDGTHKVYNYNNTLLSYYLGIGGVVKGRVHICSPCTYGIVLRV
VSEWNGVTNNWNQLFKYPGCYIGEDGNFEIEIRSPYHRTPLRLLDAQAASAFTSTLNF
YAISGPIAPSGETAKMPVVVQIDEIALPDLSVPSFPNDYFLWVDFSAFTVDAEEYVIG
SRFFDISSTTSTVHLGDNPFAHMIACHGLHHGILDLKLMWDLEGEFGKSSGGVTITKL
CGDKATGMDGASRVCALQNMGCETELYIGNFAGANPNSALSLYSRWLAIKLDKARSMK
MLRILCKPRGNFEFYGRTCFRV"
mat_peptide 296..1072
/locus_tag="ArMVs2gp1"
/product="hypothetical peptide"
/protein_id="YP_054436.1"
misc_feature 557..1072
/locus_tag="ArMVs2gp1"
/note="Nepovirus subgroup A polyprotein; Region: NeA_P2;
pfam12312"
/db_xref="CDD:372036"
mat_peptide 1073..2110
/locus_tag="ArMVs2gp1"
/product="movement protein"
/protein_id="YP_054437.1"
mat_peptide 2111..3625
/locus_tag="ArMVs2gp1"
/product="capsid protein"
/protein_id="YP_054438.1"
misc_feature 2114..2386
/locus_tag="ArMVs2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 2606..3118
/locus_tag="ArMVs2gp1"
/note="Nepovirus coat protein, central domain; Region:
Nepo_coat; pfam03391"
/db_xref="CDD:397456"
misc_feature 3137..3613
/locus_tag="ArMVs2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
ORIGIN
1 atgaaaattc tcgtggggtt ttcatataaa cgcagcccac gacttttcta atcaagagtt
61 taagaaactc aagtttgata tagccaatcc gttaagagcg gaaacaaaat caaaccgtta
121 agagcggtat caaggcgaag agtttaagaa actcacaatt gcttttcttt attccttact
181 tatttacgcg ttttatttgt ttagtgttta ttttgtttgt atatttagtg cggcatattg
241 ttacgttaat ttctctgccc gcaagggcat tttctctttt tccttttctg gccttatggc
301 caaattttat tactccgaca ggcgtttagc ctgttgggct gctggaaaga accctcacct
361 tgggggttct attgagtcat ggctggcggc cattaaatct gactcctcct tccgccaaac
421 tgttaaggag gatgtacagg tgaacagatt gcagcctacg gctgtcagga tgttttcctg
481 gaaagtgggg tctgggccca ttgacaaccc ggaaaagtgc aactggcact acgtcctcac
541 gggcgaggtg ccagcgcaac cgaccgagcc ggtaaaagct cgagaggtgg tggtgccacc
601 tgtgaaggtc attccttcac cgccccctgt gccaaggcct tactttaggc cagttggggc
661 ttttgcaccg acccggtccg ggtttatacg ggccactgtg gaaagactct cccggaaacg
721 ggaagagtcg agagctgcgg cactctttgc cgaattaccc ttggagtacc cacaaggtgc
781 tccattggtt gtcccccgtg gtttcgcggc catgaggtgg acttatcatg ccacctggag
841 gcggtggtat gacgccagtg atgagcgcgc tttgcgcgtt catcctggtg gccctgctct
901 gccccccccc cccccccctc ccccaatcca aaaaccaccc tcttttgagg agaggttaca
961 ggctgctctt gaaaggcagt cctgtgctag ggcttttgcc ctagaaacct cgctaggcct
1021 taacatggcc tggctgggaa cggctgctat ccccagcact tctgtgtgct gtgctgatgg
1081 caggactact ggggggcaaa ctattgccca ggaggctgat cctattaatc atagggtcac
1141 ttccaataca gcccctggta gggcacaatg gatctcagag cgccgcagtg ctctgagaag
1201 aagggagcaa gcaaatagct tgcaaagtct tgctgctcaa actgacatga catttgagca
1261 ggccaggaat gcgtatcttg gtgctgctga catggttgag caaggcctac cgttactacc
1321 tccattgagg aatgcctacg cacctcgtgg tctatggagg ggaccttcca ctagagccaa
1381 ttatactctt gattttaggc tcaatggaat tcccaccggg caaaatactt tagaaatatt
1441 gtataatccg gtggcagatg aggaaatgga cgaataccgt gacaggggta tgtcagcggt
1501 cgtgattgat gcactggaaa ttgctatcaa tccttttgga atgccaggca atccgaccga
1561 tcttactgtc gtagcgacat atgggcatga acgtaacatg gaacgtgcct ttattggctc
1621 ttcgtcgacc tttcttggga atggtttggc gagagctatt ttctttcctg gtttgcaata
1681 tagtcaggaa gaacctaggc gcgaatctat tattcgcctg tatgttgctt ctactaatgc
1741 cactgttgat gctgattcta tattagcagc cattagtgtt ggcactctac gccagcacat
1801 tggttcgctt cataatagaa cagtggcaag ttctgtgcat gctgctcagg tgcagggcac
1861 tactttaaga gctactatga tgggtaatgc cgttgtggtt tctcctgaag gaagtcttgt
1921 gactggaacc cctgaagcta atgttcaaat tggaagtggt tctagcatgc gaatggttgg
1981 tcccctggca tgggaaaacg ttgaagaacc aggccagact tttaccataa gaaaccgctc
2041 tcggtctatg cgagtagatc ggaatgccga cgttggagtt gctcttcctc ggatgagtac
2101 tacaacgcgg ggtcttgctg gtagaggttc tgtgcaggtg cctaaagatt gccaggcagg
2161 gagatatctg aaaacccttg atcttagaga tatggtgagt gggttttcag gtatacagta
2221 tgaaaagtgg atcactgctg gacttgttat gccagatttt aaagtggtga tccgctatcc
2281 agccaatgcc ttcacgggta ttacgtgggt tatgagcttt gatgcttaca accgaataac
2341 tagtagtatc acaactactg ctagccctgc gtataccctt tcggtccctc attggctctt
2401 acatcataaa aatgggacta cctcatgtga tattgattat ggggagcttt gcggtcacgc
2461 gatgtggttt aatgccacta cttttgaaag ccctaaactt catttcacat gcctcactgg
2521 aaataacaag gaacttgctg cggattggga attcgtggtt gagttgtatg ctgagtttga
2581 ggcagcaaaa acttttcttg gaaggcctaa ctttgtttat agtgctgatg catttaatgg
2641 gtctttcaag tttttgacta tccccccact ggaatatgac ttaagtacca ccagtgctta
2701 caagagtgtg tcccttcttt tgggtcaaac tcttattgat ggaactcata aggtatataa
2761 ttataacaat acgcttttga gttactatct tggtataggt ggtgtggtca agggcagagt
2821 gcatatatgt agcccttgta cttatggcat agtcctaaga gttgttagtg aatggaacgg
2881 ggtcactaac aattggaatc aactatttaa ataccccgga tgttatatcg gtgaagatgg
2941 gaactttgag attgaaatac gttctcccta tcatcgaact ccactacgtt tattggacgc
3001 acaggcagct agtgctttta cgagtacgct gaatttctat gcgatttcag ggccaattgc
3061 cccaagtgga gaaactgcaa aaatgccagt ggtagtgcag attgatgaaa ttgcacttcc
3121 agatctttct gttccgtcct tccccaatga ttatttttta tgggtggact tttcagcatt
3181 tactgttgat gctgaagagt atgtaatagg gtccaggttt tttgatattt cctctactac
3241 tagtactgtc caccttggag ataatccttt tgcccacatg atagcttgtc atggactcca
3301 tcatggtatc cttgatctta agttaatgtg ggatttggag ggcgaatttg gaaagagttc
3361 cggtggagtt accattacaa aattgtgtgg tgataaagct actggcatgg atggtgcatc
3421 ccgtgtttgt gctttgcaaa atatgggatg tgaaactgaa ctgtacatag gtaattttgc
3481 tggtgccaat cctaattcag cattatcttt gtacagtcga tggcttgcca ttaagttgga
3541 taaggctagg agcatgaaga tgctccgaat tttatgcaag ccaagaggga attttgagtt
3601 ttatggtaga acttgtttca gagtttaaat tcccaagcgt cttgagaatc tgacgttaaa
3661 agactcattt tgtattatat ttatatttag cttgtctacc gcttatgtgt gttgtttttc
3721 atacttttag tggcgacagt gtgttgtttg tcctttggac acacttgcct tgttggacac
3781 aaaaagattt tgctttcttt ttactgcttt tatttatttt
//
