LOCUS       NC_007366               1762 bp    cRNA    linear   VRL 13-AUG-2018
DEFINITION  Influenza A virus (A/New York/392/2004(H3N2)) segment 4, complete
            sequence.
ACCESSION   NC_007366
VERSION     NC_007366.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Influenza A virus (A/New York/392/2004(H3N2))
  ORGANISM  Influenza A virus (A/New York/392/2004(H3N2))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V.,
            Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L.,
            Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y.,
            Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T.
  TITLE     The NIAID Influenza Genome Sequencing Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1762)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2005) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1762)
  CONSRTM   The NIAID Influenza Genome Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI,
            National Center for Biotechnology Information, NIH, Bethesda, MD
            20894, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from CY002064.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Influenza A virus (A/New York/392/2004(H3N2))"
                     /mol_type="viral cRNA"
                     /strain="A/New York/392/2004"
                     /serotype="H3N2"
                     /isolation_source="gender:M; age:16y"
                     /host="Homo sapiens"
                     /db_xref="taxon:335341"
                     /segment="4"
                     /lab_host="RhMK 1 passage(s)"
                     /country="USA: Tompkins County, NY"
                     /collection_date="21-Dec-2004"
     gene            30..1730
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
                     /db_xref="GeneID:3655151"
     CDS             30..1730
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="YP_308839.1"
                     /db_xref="GeneID:3655151"
                     /translation="MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKT
                     ITNDQIEVTNATELVQSSSTGGICDSPHQILDGENCTLIDALLGDPQCDGFQNKKWDL
                     FVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN
                     NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQISLYAQASGRI
                     TVSTKRSQQTVIPSIGSRPRIRDVPSRISIYWTIVKPGDILLINSTGNLIAPRGYFKI
                     RSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPRYVKQNTLKLAT
                     GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ
                     INGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ
                     HTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYR
                     DEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNICI
                     "
     sig_peptide     30..77
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
     mat_peptide     78..1064
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
                     /product="HA1"
                     /protein_id="YP_308875.1"
     misc_feature    114..1592
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
                     /note="Haemagglutinin; Region: Hemagglutinin; pfam00509"
                     /db_xref="CDD:395409"
     mat_peptide     1065..1727
                     /gene="HA"
                     /locus_tag="FLUAVH3N2_s4p1"
                     /product="HA2"
                     /protein_id="YP_308876.1"
ORIGIN      
        1 agcaaaagca ggggataatt ctattaacca tgaagactat cattgctttg agctacattc
       61 tatgtctggt tttcgctcaa aaacttcccg gaaatgacaa cagcacggca acgctgtgcc
      121 ttgggcacca tgcagtacca aacggaacga tagtgaaaac aatcacgaat gaccaaattg
      181 aagtcactaa tgctactgaa ctggttcaga gttcctcaac aggtggaata tgcgacagtc
      241 ctcatcagat ccttgatgga gaaaactgca cactaataga tgctctattg ggagaccctc
      301 agtgtgatgg cttccaaaat aagaaatggg acctttttgt tgaacgcagc aaagcctaca
      361 gcaactgtta cccttatgat gtgccggatt atgcctccct taggtcacta gttgcctcat
      421 ccggcacact ggagtttaac aatgaaagct tcaattggac tggagtcact caaaatggaa
      481 caagctctgc ttgcaaaagg agatctaata acagtttctt tagtagattg aattggttga
      541 cccacttaaa attcaaatac ccagcattga acgtgactat gccaaacaat gaaaaatttg
      601 acaaactgta catttggggg gttcaccacc cgggtacgga caatgaccaa atcagcctat
      661 atgctcaagc atcaggaaga atcacagtct ctaccaaaag aagccaacaa accgtaatcc
      721 cgagtatcgg atctagaccc aggataaggg atgtccccag cagaataagc atctattgga
      781 caatagtaaa accgggagac atacttttga ttaacagcac agggaatcta attgctcctc
      841 ggggttactt caaaatacga agtgggaaaa gctcaataat gagatcagat gcacccattg
      901 gcaaatgcaa ttctgaatgc atcactccaa atggaagcat tcccaatgac aaaccatttc
      961 aaaatgtaaa caggatcaca tatggggcct gtcccagata tgttaagcaa aacactctga
     1021 aattggcaac agggatgcga aatgtaccag agaaacaaac tagaggcata tttggcgcaa
     1081 tcgcgggttt catagaaaat ggttgggagg gaatggtaga cggttggtac ggtttcaggc
     1141 atcaaaattc tgagggaaca ggacaagcag cagatctcaa aagcactcaa gcagcaatca
     1201 accaaatcaa tgggaagctg aataggttga tcgggaaaac aaacgagaaa ttccatcaga
     1261 ttgaaaaaga attctcagaa gtagaaggga gaattcagga cctcgagaaa tatgttgagg
     1321 acactaaaat agatctctgg tcatacaacg cggagcttct tgtggccctg gagaaccaac
     1381 atacaattga tctaactgac tcagaaatga acaaactgtt tgaaagaaca aagaagcaac
     1441 tgagggaaaa tgctgaggat atgggcaatg gttgtttcaa aatataccac aaatgtgaca
     1501 atgcctgcat agggtcaatc agaaatggaa cttatgacca tgatgtatac agagatgaag
     1561 cattaaacaa ccggttccag atcaaaggtg ttgagttgaa gtcaggatac aaagattgga
     1621 tcctatggat ttcctttgcc atatcatgtt ttttgctttg tgttgctttg ttggggttca
     1681 tcatgtgggc ctgccaaaaa ggcaacatta ggtgcaacat ttgcatttga gtgcattaat
     1741 taaaaacacc cttgtttcta ct
//