LOCUS NC_010713 2767 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Clerodendrum golden mosaic virus DNA-A, complete sequence.
ACCESSION NC_010713
VERSION NC_010713.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Clerodendron golden mosaic virus (ClGMV)
ORGANISM Clerodendron golden mosaic virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus.
REFERENCE 1 (bases 1 to 2767)
AUTHORS Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M. and Dale,J.
TITLE Molecular characterization of begomoviruses and DNA satellites from
Vietnam: additional evidence that the New World geminiviruses were
present in the Old World prior to continental separation
JOURNAL J. Gen. Virol. 89 (PT 1), 312-326 (2008)
PUBMED 18089756
REFERENCE 2 (bases 1 to 2767)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2767)
AUTHORS Ha,C.V., Coombs,S., Revill,P.A., Harding,R.M., Vu,M.T. and
Dale,J.L.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2006) Institute of Health and Biomedical
Innovation, Queensland University of Technology, 2 George Street,
Brisbane, Queensland 4001, Australia
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from DQ641692.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2767
/organism="Clerodendron golden mosaic virus"
/mol_type="genomic DNA"
/host="glory bower (Clerodendrum philippinum)"
/db_xref="taxon:390438"
/segment="DNA A"
/country="Viet Nam: Sonla"
/acronym="ClGMV"
gene 100..459
/gene="AV2"
/locus_tag="CGMV_sAgp1"
/db_xref="GeneID:6308655"
CDS 100..459
/gene="AV2"
/locus_tag="CGMV_sAgp1"
/codon_start=1
/product="AV2 protein"
/protein_id="YP_001911128.1"
/db_xref="GeneID:6308655"
/translation="MLTSHTGLSDMWDPLVNDFPETVHGLRCMLAVKYLKYVESTYSP
DTLGYDLIRDLILVVRAKNYGEASRRYNHFHTRLQGSTEAELRQPVSEPCACPHCPRH
TKTVMGQSAHVQEAQDI"
misc_feature 130..363
/gene="AV2"
/locus_tag="CGMV_sAgp1"
/note="Geminivirus V2 protein; Region: Gemini_V2;
pfam01524"
/db_xref="CDD:366689"
misc_feature 364..435
/gene="AV2"
/locus_tag="CGMV_sAgp1"
/note="WCCH motif; Region: WCCH; pfam03716"
/db_xref="CDD:202737"
gene 290..1060
/gene="AV1"
/locus_tag="CGMV_sAgp2"
/db_xref="GeneID:6308657"
CDS 290..1060
/gene="AV1"
/locus_tag="CGMV_sAgp2"
/codon_start=1
/product="CP protein"
/protein_id="YP_001911129.1"
/db_xref="GeneID:6308657"
/translation="MAKRAGDIIISTPASKVRRRLNFDSPYQNRVPVLTARGTRKQLW
ANRPMYRKPRIFKLYRGLDVPRGCEGPCKVQSFEQRHDVAHVGKVICISDVTRGNGIT
HRVGKRFCIKSVYVLGKVWMDENIKVKNHTNSVMFFVVRDRRPYGTPQEFGQVFNTYD
NEPSTATVKNDLRDRFQVIRKFYATVTGGQYASREQTLVRRFIRVNNYVVYNHQEAAK
YENHTENALLLYMACTHASNPVYATLKIRIYFYDSVTN"
misc_feature 341..1057
/gene="AV1"
/locus_tag="CGMV_sAgp2"
/note="Geminivirus coat protein/nuclear export factor BR1
family; Region: Gemini_coat; pfam00844"
/db_xref="CDD:307130"
gene complement(1057..1461)
/gene="AC3"
/locus_tag="CGMV_sAgp3"
/db_xref="GeneID:6308658"
CDS complement(1057..1461)
/gene="AC3"
/locus_tag="CGMV_sAgp3"
/codon_start=1
/product="REn protein"
/protein_id="YP_001911130.1"
/db_xref="GeneID:6308658"
/translation="MDSRTGEIITATQAESGVFIWEVPNPLYFKIISHLDRPMFRPHD
IITIQIQFNHNLRRALGLHKCFLSFRIYTRLNPPTGRFLRVFKNECMKYLDSLGVISI
NNVIRTVRHVLYDVIAGTLDVIDHHSVNFKYY"
misc_feature complement(1117..1458)
/gene="AC3"
/locus_tag="CGMV_sAgp3"
/note="Geminivirus AL3 protein; Region: Gemini_AL3;
pfam01407"
/db_xref="CDD:279715"
gene complement(1202..1606)
/gene="AC2"
/locus_tag="CGMV_sAgp4"
/db_xref="GeneID:6308653"
CDS complement(1202..1606)
/gene="AC2"
/locus_tag="CGMV_sAgp4"
/codon_start=1
/product="TrAP protein"
/protein_id="YP_001911131.1"
/db_xref="GeneID:6308653"
/translation="MQSSSHSQSLSIQVPIKVQHKIAKKRSRRRRIDLECGCSYFLSI
NCHNHGFTHRGNHHCNSSGEWRFYLGGSKSPIFQNHQPPRQANVPTTRHHHHPDTIQP
QPTESTGTSQMLPILSDLHTFESTDWEIFKSL"
misc_feature complement(1214..1561)
/gene="AC2"
/locus_tag="CGMV_sAgp4"
/note="Geminivirus AL2 protein; Region: Gemini_AL2;
pfam01440"
/db_xref="CDD:279747"
gene complement(1527..2594)
/gene="AC1"
/locus_tag="CGMV_sAgp5"
/db_xref="GeneID:6308654"
CDS complement(1527..2594)
/gene="AC1"
/locus_tag="CGMV_sAgp5"
/codon_start=1
/product="rep protein"
/protein_id="YP_001911132.1"
/db_xref="GeneID:6308654"
/translation="MPPPTKFRINAKNYFLTYPQCSLTKEETLARLLAIVTPTNKKFI
KICRELHEDGSPHLHVLMQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKS
YMDKDGDTLEWGEFQIDGRSARGGPQTANDAYAQALNTGSKHEALKVIKELAPKDFIL
QFHNLNSNLDRIFVQEVPIYRSPFLSSSFNQVPEELELWVSENVMSAAARPLRPKSIV
LEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG
AQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPGASYIQFLNEEKQSALKTWALKNAEFV
TLTEPLYSSTNQGPTQDCQET"
misc_feature complement(2238..2576)
/gene="AC1"
/locus_tag="CGMV_sAgp5"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1905..2219)
/gene="AC1"
/locus_tag="CGMV_sAgp5"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(2135..2566)
/gene="AC4"
/locus_tag="CGMV_sAgp6"
/db_xref="GeneID:6308656"
CDS complement(2135..2566)
/gene="AC4"
/locus_tag="CGMV_sAgp6"
/codon_start=1
/product="AC4 protein"
/protein_id="YP_001911133.1"
/db_xref="GeneID:6308656"
/translation="MPKIIFSLIHNAHSQKKKLLPDFWQLLHQPIKNSSRFAENSTKM
GALISTFLCNSRANSNARINDSSIWYPQQDQPTSILTFKGQNRVPTSSPIWIRTGTHW
NGENSRSTGDLHEEVHRQLMMLTPRRLTLAVSTKLLRSLKN"
misc_feature complement(2186..2437)
/gene="AC4"
/locus_tag="CGMV_sAgp6"
/note="Geminivirus C4 protein; Region: Gemini_C4;
pfam01492"
/db_xref="CDD:279790"
ORIGIN
1 accgggtggc cgcggggtct ctttaaagtg ggtcccacct attaaaacaa ccaatccgca
61 tagctcctct gagcttgtta gtcaaaaggt ggcctataaa tgttgaccag tcatactgga
121 ttgtcagaca tgtgggatcc attggtgaat gattttcctg agaccgtaca tggtcttagg
181 tgtatgctag ctgtcaaata cctgaaatac gttgaaagta cgtattcccc tgatacactc
241 ggatacgatc taatccgtga tctgatactt gttgtccgtg ccaaaaatta tggcgaagcg
301 agccggagat ataatcattt ccacacccgc ctccaaggtt cgacggaggc tgaacttcga
361 cagcccgtat cagaaccgtg tgcctgtcct cactgcccga ggcacacgaa aacagttatg
421 ggccaatcgg cccatgtaca ggaagcccag gatatttaaa ttatatagag gccttgatgt
481 gcctcgtgga tgtgaaggcc catgtaaagt ccagtcattt gagcaacgcc atgatgtggc
541 ccatgtaggg aaggtcatat gtatatctga tgttacacgt gggaatggta ttactcatcg
601 cgttggtaaa cgtttttgta ttaagtccgt atatgttttg ggcaaggtct ggatggatga
661 aaacatcaag gtcaagaatc acacgaatag tgtaatgttt tttgttgtac gtgatcgaag
721 gccgtatggt acccctcaag aatttggcca agtatttaat acttatgaca acgagccaag
781 tactgctact gtgaagaatg atctcagaga tagatttcaa gtgatcagga agttctatgc
841 aactgtgaca ggtggtcagt atgccagtag agaacagaca ttagtcagga gattcattag
901 agttaataat tatgttgtgt ataatcatca ggaggctgct aagtacgaga atcatacaga
961 gaatgcattg ttgttgtata tggcatgtac acatgcctca aatcctgtgt atgctacgtt
1021 aaaaatacga atctattttt atgattcggt aacaaattaa taatatttga aattcaccga
1081 atggtggtcg attacatcca aagtaccagc tattacatca tacaaaacat gtcttacagt
1141 cctaattaca ttgttaattg aaataacccc taaactatct aagtacttca tacattcatt
1201 tttaaagact cttaaaaatc tcccagtcgg tggattcaaa cgtgtgtaga tccgaaagga
1261 taggaagcat ttgtgaagtc ccagtgctct ccgtaggttg tggttgaatt gtatctggat
1321 ggtgatgatg tcgtgtggtc ggaacattgg cctgtcgagg tggctgatga ttttgaaata
1381 taggggattt ggaacctccc agataaaaac gccactctcc gcttgagttg cagtgatgat
1441 ttccccggtg cgtgaatcca tggttgtggc aattgattga taagaaatat gagcagccgc
1501 actccaaatc tatccttcgt cgtctactac gtttcttggc aatcttgtgt tggaccttga
1561 ttggtacttg aatagagagg ctctgtgagt gtgacgaact ctgcattttt caaagcccaa
1621 gtctttagtg cggattgctt ttcttcattt aaaaattgaa tatagctggc accgggccct
1681 ggattgcaga gaaagatagt gggaatccca cctttaattt gaactggctt tccgtatttt
1741 gtattgcttt gccagtctct ttgggccccc atgaattcct taaagtgctt taaatagtgg
1801 gggtcgacat catcaatgac gttataccat gcgtcattac tgtaaacctt gggactcaag
1861 tctaggtgac cacataaata attatgtggt ccaagtgatc tggcccacat tgttttccct
1921 gttcgactat cgccctcaag aacaattgat ttaggtctta atggccgcgc agcggcactc
1981 atcacatttt ctgaaaccca gagttcaagt tcttctggaa cttgattaaa agaagatgaa
2041 agaaatgggg acctataaat aggcacctct tgtacaaata tcctatctaa atttgaattt
2101 aaattgtgaa attgtaaaat aaaatcctta ggggctaatt ctttaatgac cttaagagct
2161 tcgtgcttac tgccagtgtt aagcgcctgg gcgtaagcat cattagctgt ctgtggacct
2221 cctcgtgcag atctcccgtc gatctggaat tctccccatt ccagtgtgtc cccgtcctta
2281 tccatatagg acttgacgtc ggaactcgat tttgcccctt gaatgttagg atggaagtgg
2341 gctgatcttg ttggggatac cagatcgaag aatcgttgat tcttgcattg gaatttgccc
2401 tcgaattgca taagaacgtg gagatgaggg ctcccatctt cgtggagttc tctgcaaatc
2461 ttgatgaatt ttttattggt tggtgtaaca attgccagaa gtctggcaag agtttcttct
2521 tttgtgagtg agcattgtgg ataagtgaga aaataatttt tggcatttat tctgaatttt
2581 gttggaggag gcatgttgac ttggtcaact ggtgtctcgc aaactgggtg atatatattg
2641 gtgtctgggg tcctataaat acttagacac ctaatggcac attcgtaaat atcttaccca
2701 cttttgaatt tgaatttcaa atttgaattt aatttcggct ccaaaaagcg gccacccgta
2761 taatatt
//
