GenomeNet

Database: RefSeq
Entry: NC_013221
LinkDB: NC_013221
Original site: NC_013221 
LOCUS       NC_013221               2896 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Phytophthora infestans RNA virus 1 RNA2A, complete genome.
ACCESSION   NC_013221
VERSION     NC_013221.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Phytophthora infestans RNA virus 1
  ORGANISM  Phytophthora infestans RNA virus 1
            Viruses; Riboviria.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Cai,G., Myers,K., Hillman,B.I. and Fry,W.E.
  TITLE     A novel virus of the late blight pathogen, Phytophthora infestans,
            with two RNA segments and a supergroup 1 RNA-dependent RNA
            polymerase
  JOURNAL   Virology 392 (1), 52-61 (2009)
   PUBMED   19632701
REFERENCE   2  (bases 1 to 2896)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2009) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2896)
  AUTHORS   Cai,G., Myers,K., Hillman,B.I. and Fry,W.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2008) Plant Pathology and Plant-Microbe Biology,
            Cornell University, 334 Plant Science, Ithaca, NY 14853, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FJ373317.
            GenBank Accession Numbers FJ373316-FJ373318 represent the complete
            genome of Phytophthora infestans RNA virus 1. Segments 2A and 2B
            are likely different versions of the same segment.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Phytophthora infestans RNA virus 1"
                     /mol_type="genomic RNA"
                     /host="Phytophthora infestans"
                     /db_xref="taxon:640897"
                     /segment="RNA 2"
                     /geo_loc_name="Mexico"
                     /note="virus isolated in 2006 from Phytophthora infestans
                     originally collected in 1998; segments 2A and 2B are very
                     closely related and are likely different versions of the
                     same segment"
     gene            57..2600
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /db_xref="GeneID:8417694"
     CDS             57..2600
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="YP_003193668.1"
                     /db_xref="GeneID:8417694"
                     /translation="MRQLVCCVLLCLALVQLSSSVNYYGVGSGVSGLFAGSSCRYACS
                     AVGFLIASTAGRGVSVGARGGVFPALSGYLFLQMAGGVEALGGVPSAIERGSWNANGD
                     WSPGSTAGRKFSDQPKLDGTKEFGGFCERHSLRCYTVSHRFFASQACAEIYSTTDRYG
                     FSPVTHRDYCRNDCYFNRFLVCDQFNGAGYFRNGSLAGKLFGVFRNATKSAGARLDKL
                     IETGEFGEIEVLPDEKEIERVWELVFPLVPLGLVGIIAMLKFANVAPVKILLITTLFV
                     LITLGCDLEAVLTICAVVMMLFTMLAPARNEFLNSLSVTIATVILFVSIAFFVDNQIV
                     VIGFGFLLCGGLVFELFKYARSTRAADSTFVLFFVCLAIYLIDYVKIINETKGVSNAL
                     LDCLHGVGAIMVPYGRTKSVLLNDLILGVDLYRWILRFHEFPKIIAVGFGFVAFGFFL
                     AIRAVVAWNSVPNLRTKYDLGNVMTGLYVYCIDVFQWTWLFYYIIGSESWNYKRGFYS
                     LFNAILIVAEFNYALDFLVVRFMLWVGEKVFFQTGYLKMTRLLNAGCEIELDRKIFPV
                     KGAFPWLDVSNLLNIVDNVKGITSFANGVTRAGQCLVRRDERGMTNILTVDHVVGLSK
                     DVSVGGVGVGLFETRSYKGVDPVIALNANVDGGTDVPILSKNETSSVKHLIVIHSDKR
                     LCFIDRFKFGRVGEIEAVVNLRAGDSGGPIIGVLSNGEFRYVGAVSRGSFDDGSANFI
                     SSVLHEGGSYSPGSEGRFMDRFGNKMAEWEISSKVTELLGEHAADFELYERKEMSRDS
                     FKRAKGKSRAALDALISVGGFSDKETSEIRGAFEEGQIVRFNMARKAAE"
     sig_peptide     57..116
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /inference="profile:SignalP3.0:"
     misc_feature    771..839
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    876..944
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    987..1040
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    1053..1106
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    1134..1202
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    1284..2279
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="SUPERFAMILY SSF50494; Region: trypsin-like serine
                     protease"
     misc_feature    1362..1430
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    1473..1541
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     misc_feature    1578..1646
                     /gene="ORF2A"
                     /locus_tag="PiRV-1-s2_gp1"
                     /note="transmembrane region"
     gene            127..711
                     /gene="ORF3A"
                     /locus_tag="PiRV-1-s2_gp2"
                     /db_xref="GeneID:8417693"
     CDS             127..711
                     /gene="ORF3A"
                     /locus_tag="PiRV-1-s2_gp2"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="YP_003193669.1"
                     /db_xref="GeneID:8417693"
                     /translation="MVSEVVLVDYSRDRHAVTRAAQWVFSLPARLDGVCPWVREEECS
                     LLCQVICFFRWLAEWKRWVACLLPSNEVRGMRTEIGVQEAQLGVNSPINRSWMELRSL
                     AVFVSVIVCGVILSVIGFLRHRRALRSTRLLTVMGLAQLLIVTIAGMTVTLTDFLCVI
                     SLMELVTLEMAVLLESFLEFFEMRRNRLVPVSIS"
     misc_feature    421..489
                     /gene="ORF3A"
                     /locus_tag="PiRV-1-s2_gp2"
                     /note="transmembrane region"
     misc_feature    547..615
                     /gene="ORF3A"
                     /locus_tag="PiRV-1-s2_gp2"
                     /note="transmembrane region"
ORIGIN      
        1 gagttttgtg ttttaagtcc taacggagag gacacaagac atcctgtgtg cagcgaatga
       61 gacaattagt ttgctgtgtg ctcctttgct tggcgttggt tcaactatcg tcttccgtga
      121 actattatgg tgtcggaagt ggtgttagtg gactattcgc gggatcgtca tgccgttacg
      181 cgtgcagcgc agtgggtttt ctcattgcca gcacggctgg acggggtgtg tccgtgggtg
      241 cgagaggagg agtgttccct gctttgtcag gttatctgtt tcttcagatg gctggcggag
      301 tggaagcgtt gggtggcgtg ccttctgcca tcgaacgagg ttcgtggaat gcgaacggag
      361 attggagtcc aggaagcaca gctgggcgta aattctccga tcaaccgaag ttggatggaa
      421 ctaaggagtt tggcggtttt tgtgagcgtc atagtttgcg gtgttatact gtcagtcata
      481 ggttttttgc gtcacaggcg tgcgctgaga tctactcgac tactgaccgt tatgggttta
      541 gcccagttac tcatcgtgac tattgcagga atgactgtta ctttaacaga tttcttgtgt
      601 gtgatcagtt taatggagct ggttacttta gaaatggcag tcttgctgga aagctttttg
      661 gagtttttcg aaatgcgacg aaatcggctg gtgcccgtct cgataagttg attgagactg
      721 gtgaattcgg tgaaattgaa gtgttgcctg atgaaaagga gatcgaaagg gtctgggaac
      781 ttgttttccc attggtccct ttaggtcttg ttggaatcat tgcaatgttg aagttcgcca
      841 acgttgcacc ggttaagatc cttctgatta cgaccctgtt cgtattgatt acgttgggtt
      901 gtgatttgga ggcggtactt acgatttgtg cggtagtaat gatgctattc acaatgcttg
      961 ctcctgctcg caacgagttt ctaaattcgc tgtcagtcac gatagcgact gtgatactct
     1021 ttgtgtccat tgccttcttt gtcgataacc agattgtggt gattggtttc ggtttcttat
     1081 tgtgtggtgg tcttgtcttt gagttgttta aatacgctcg aagtacgcgc gcagcggatt
     1141 caacattcgt gttgttcttc gtttgccttg ccatttatct cattgactat gttaaaatta
     1201 tcaatgagac gaaaggcgtg agcaatgcgt tgcttgattg tctgcatggt gtaggtgcca
     1261 ttatggtgcc ttacggaaga acgaagtctg tgttacttaa cgaccttatt ttaggcgttg
     1321 acctttacag atggattctc cgttttcatg agtttccgaa aatcatagcc gtggggtttg
     1381 gtttcgtggc atttggtttc ttcttggcga ttcgtgctgt tgtggcatgg aattccgttc
     1441 cgaatttgcg tactaagtat gatcttggta acgtaatgac gggactttac gtttattgca
     1501 ttgatgtatt tcaatggact tggctgttct actatatcat cggtagtgaa agttggaact
     1561 acaaacgtgg tttctacagt ctcttcaacg cgattttgat cgttgcggag ttcaattacg
     1621 cccttgattt tctagtggta agattcatgc tgtgggttgg tgagaaagtt ttctttcaaa
     1681 ctggttacct caagatgacc agactgctta atgcaggatg tgaaattgag ttggatcgca
     1741 agatctttcc agttaaagga gccttcccat ggcttgacgt cagcaacttg ttgaacattg
     1801 ttgataatgt gaagggtatt acttcatttg ccaatggtgt cacaagggct ggtcagtgtc
     1861 tggtccgtcg tgatgaacgt ggaatgacta acatcctgac tgtggatcat gtcgttgggt
     1921 tatccaaaga cgtgtccgta ggtggtgttg gtgtcggttt gtttgagacg cgtagttaca
     1981 agggtgttga ccctgtgatt gcgttgaatg ctaatgttga tggtggcact gatgtgccga
     2041 ttctctcaaa gaatgaaacg agttcagtga aacatctgat cgtgattcat tcagacaaaa
     2101 ggttgtgttt tatcgatagg ttcaaatttg gacgtgttgg tgaaattgaa gccgttgtca
     2161 acttgcgcgc tggtgattcg ggtggtccga tcataggcgt gcttagtaac ggagagttta
     2221 ggtatgttgg tgccgtgtcg cgcggaagtt ttgatgatgg ctcagccaat ttcatttctt
     2281 ccgtgctaca tgagggtggt tcatattctc ccggttcgga gggacgattt atggacaggt
     2341 ttggtaacaa gatggctgaa tgggaaatca gctctaaagt taccgaactg ctgggtgaac
     2401 atgctgccga tttcgaatta tacgaacgca aggagatgtc gcgtgatagc ttcaaacgag
     2461 ctaaaggcaa atctcgtgca gcgcttgatg cgctaatttc ggtcggtggg ttttctgaca
     2521 aagagacttc ggagatacgc ggtgcgttcg aagagggtca aattgttcgt ttcaatatgg
     2581 cgcgtaaagc ggcagaatga gacgcccagg ttgtatgttg catttataaa agttaaatag
     2641 gaataaaaat tagttagatg tcgcgtgctt ttctttccct gaaaaggagg gttgccataa
     2701 taatggtggg aaaagtttta tattgcatgt gttgcgcatc ttactgatga atgataaatt
     2761 ctgacgttga tgggtgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2881 aaaaaaaaaa aaaaaa
//
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