LOCUS NC_013221 2896 bp RNA linear VRL 13-AUG-2018
DEFINITION Phytophthora infestans RNA virus 1 RNA2A, complete genome.
ACCESSION NC_013221
VERSION NC_013221.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Phytophthora infestans RNA virus 1
ORGANISM Phytophthora infestans RNA virus 1
Viruses; Riboviria.
REFERENCE 1 (bases 1 to 2896)
AUTHORS Cai,G., Myers,K., Hillman,B.I. and Fry,W.E.
TITLE A novel virus of the late blight pathogen, Phytophthora infestans,
with two RNA segments and a supergroup 1 RNA-dependent RNA
polymerase
JOURNAL Virology 392 (1), 52-61 (2009)
PUBMED 19632701
REFERENCE 2 (bases 1 to 2896)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2896)
AUTHORS Cai,G., Myers,K., Hillman,B.I. and Fry,W.E.
TITLE Direct Submission
JOURNAL Submitted (08-OCT-2008) Plant Pathology and Plant-Microbe Biology,
Cornell University, 334 Plant Science, Ithaca, NY 14853, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FJ373317.
GenBank Accession Numbers FJ373316-FJ373318 represent the complete
genome of Phytophthora infestans RNA virus 1. Segments 2A and 2B
are likely different versions of the same segment.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2896
/organism="Phytophthora infestans RNA virus 1"
/mol_type="genomic RNA"
/host="Phytophthora infestans"
/db_xref="taxon:640897"
/segment="RNA 2"
/geo_loc_name="Mexico"
/note="virus isolated in 2006 from Phytophthora infestans
originally collected in 1998; segments 2A and 2B are very
closely related and are likely different versions of the
same segment"
gene 57..2600
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/db_xref="GeneID:8417694"
CDS 57..2600
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_003193668.1"
/db_xref="GeneID:8417694"
/translation="MRQLVCCVLLCLALVQLSSSVNYYGVGSGVSGLFAGSSCRYACS
AVGFLIASTAGRGVSVGARGGVFPALSGYLFLQMAGGVEALGGVPSAIERGSWNANGD
WSPGSTAGRKFSDQPKLDGTKEFGGFCERHSLRCYTVSHRFFASQACAEIYSTTDRYG
FSPVTHRDYCRNDCYFNRFLVCDQFNGAGYFRNGSLAGKLFGVFRNATKSAGARLDKL
IETGEFGEIEVLPDEKEIERVWELVFPLVPLGLVGIIAMLKFANVAPVKILLITTLFV
LITLGCDLEAVLTICAVVMMLFTMLAPARNEFLNSLSVTIATVILFVSIAFFVDNQIV
VIGFGFLLCGGLVFELFKYARSTRAADSTFVLFFVCLAIYLIDYVKIINETKGVSNAL
LDCLHGVGAIMVPYGRTKSVLLNDLILGVDLYRWILRFHEFPKIIAVGFGFVAFGFFL
AIRAVVAWNSVPNLRTKYDLGNVMTGLYVYCIDVFQWTWLFYYIIGSESWNYKRGFYS
LFNAILIVAEFNYALDFLVVRFMLWVGEKVFFQTGYLKMTRLLNAGCEIELDRKIFPV
KGAFPWLDVSNLLNIVDNVKGITSFANGVTRAGQCLVRRDERGMTNILTVDHVVGLSK
DVSVGGVGVGLFETRSYKGVDPVIALNANVDGGTDVPILSKNETSSVKHLIVIHSDKR
LCFIDRFKFGRVGEIEAVVNLRAGDSGGPIIGVLSNGEFRYVGAVSRGSFDDGSANFI
SSVLHEGGSYSPGSEGRFMDRFGNKMAEWEISSKVTELLGEHAADFELYERKEMSRDS
FKRAKGKSRAALDALISVGGFSDKETSEIRGAFEEGQIVRFNMARKAAE"
sig_peptide 57..116
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/inference="profile:SignalP3.0:"
misc_feature 771..839
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 876..944
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 987..1040
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 1053..1106
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 1134..1202
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 1284..2279
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="SUPERFAMILY SSF50494; Region: trypsin-like serine
protease"
misc_feature 1362..1430
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 1473..1541
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
misc_feature 1578..1646
/gene="ORF2A"
/locus_tag="PiRV-1-s2_gp1"
/note="transmembrane region"
gene 127..711
/gene="ORF3A"
/locus_tag="PiRV-1-s2_gp2"
/db_xref="GeneID:8417693"
CDS 127..711
/gene="ORF3A"
/locus_tag="PiRV-1-s2_gp2"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_003193669.1"
/db_xref="GeneID:8417693"
/translation="MVSEVVLVDYSRDRHAVTRAAQWVFSLPARLDGVCPWVREEECS
LLCQVICFFRWLAEWKRWVACLLPSNEVRGMRTEIGVQEAQLGVNSPINRSWMELRSL
AVFVSVIVCGVILSVIGFLRHRRALRSTRLLTVMGLAQLLIVTIAGMTVTLTDFLCVI
SLMELVTLEMAVLLESFLEFFEMRRNRLVPVSIS"
misc_feature 421..489
/gene="ORF3A"
/locus_tag="PiRV-1-s2_gp2"
/note="transmembrane region"
misc_feature 547..615
/gene="ORF3A"
/locus_tag="PiRV-1-s2_gp2"
/note="transmembrane region"
ORIGIN
1 gagttttgtg ttttaagtcc taacggagag gacacaagac atcctgtgtg cagcgaatga
61 gacaattagt ttgctgtgtg ctcctttgct tggcgttggt tcaactatcg tcttccgtga
121 actattatgg tgtcggaagt ggtgttagtg gactattcgc gggatcgtca tgccgttacg
181 cgtgcagcgc agtgggtttt ctcattgcca gcacggctgg acggggtgtg tccgtgggtg
241 cgagaggagg agtgttccct gctttgtcag gttatctgtt tcttcagatg gctggcggag
301 tggaagcgtt gggtggcgtg ccttctgcca tcgaacgagg ttcgtggaat gcgaacggag
361 attggagtcc aggaagcaca gctgggcgta aattctccga tcaaccgaag ttggatggaa
421 ctaaggagtt tggcggtttt tgtgagcgtc atagtttgcg gtgttatact gtcagtcata
481 ggttttttgc gtcacaggcg tgcgctgaga tctactcgac tactgaccgt tatgggttta
541 gcccagttac tcatcgtgac tattgcagga atgactgtta ctttaacaga tttcttgtgt
601 gtgatcagtt taatggagct ggttacttta gaaatggcag tcttgctgga aagctttttg
661 gagtttttcg aaatgcgacg aaatcggctg gtgcccgtct cgataagttg attgagactg
721 gtgaattcgg tgaaattgaa gtgttgcctg atgaaaagga gatcgaaagg gtctgggaac
781 ttgttttccc attggtccct ttaggtcttg ttggaatcat tgcaatgttg aagttcgcca
841 acgttgcacc ggttaagatc cttctgatta cgaccctgtt cgtattgatt acgttgggtt
901 gtgatttgga ggcggtactt acgatttgtg cggtagtaat gatgctattc acaatgcttg
961 ctcctgctcg caacgagttt ctaaattcgc tgtcagtcac gatagcgact gtgatactct
1021 ttgtgtccat tgccttcttt gtcgataacc agattgtggt gattggtttc ggtttcttat
1081 tgtgtggtgg tcttgtcttt gagttgttta aatacgctcg aagtacgcgc gcagcggatt
1141 caacattcgt gttgttcttc gtttgccttg ccatttatct cattgactat gttaaaatta
1201 tcaatgagac gaaaggcgtg agcaatgcgt tgcttgattg tctgcatggt gtaggtgcca
1261 ttatggtgcc ttacggaaga acgaagtctg tgttacttaa cgaccttatt ttaggcgttg
1321 acctttacag atggattctc cgttttcatg agtttccgaa aatcatagcc gtggggtttg
1381 gtttcgtggc atttggtttc ttcttggcga ttcgtgctgt tgtggcatgg aattccgttc
1441 cgaatttgcg tactaagtat gatcttggta acgtaatgac gggactttac gtttattgca
1501 ttgatgtatt tcaatggact tggctgttct actatatcat cggtagtgaa agttggaact
1561 acaaacgtgg tttctacagt ctcttcaacg cgattttgat cgttgcggag ttcaattacg
1621 cccttgattt tctagtggta agattcatgc tgtgggttgg tgagaaagtt ttctttcaaa
1681 ctggttacct caagatgacc agactgctta atgcaggatg tgaaattgag ttggatcgca
1741 agatctttcc agttaaagga gccttcccat ggcttgacgt cagcaacttg ttgaacattg
1801 ttgataatgt gaagggtatt acttcatttg ccaatggtgt cacaagggct ggtcagtgtc
1861 tggtccgtcg tgatgaacgt ggaatgacta acatcctgac tgtggatcat gtcgttgggt
1921 tatccaaaga cgtgtccgta ggtggtgttg gtgtcggttt gtttgagacg cgtagttaca
1981 agggtgttga ccctgtgatt gcgttgaatg ctaatgttga tggtggcact gatgtgccga
2041 ttctctcaaa gaatgaaacg agttcagtga aacatctgat cgtgattcat tcagacaaaa
2101 ggttgtgttt tatcgatagg ttcaaatttg gacgtgttgg tgaaattgaa gccgttgtca
2161 acttgcgcgc tggtgattcg ggtggtccga tcataggcgt gcttagtaac ggagagttta
2221 ggtatgttgg tgccgtgtcg cgcggaagtt ttgatgatgg ctcagccaat ttcatttctt
2281 ccgtgctaca tgagggtggt tcatattctc ccggttcgga gggacgattt atggacaggt
2341 ttggtaacaa gatggctgaa tgggaaatca gctctaaagt taccgaactg ctgggtgaac
2401 atgctgccga tttcgaatta tacgaacgca aggagatgtc gcgtgatagc ttcaaacgag
2461 ctaaaggcaa atctcgtgca gcgcttgatg cgctaatttc ggtcggtggg ttttctgaca
2521 aagagacttc ggagatacgc ggtgcgttcg aagagggtca aattgttcgt ttcaatatgg
2581 cgcgtaaagc ggcagaatga gacgcccagg ttgtatgttg catttataaa agttaaatag
2641 gaataaaaat tagttagatg tcgcgtgctt ttctttccct gaaaaggagg gttgccataa
2701 taatggtggg aaaagtttta tattgcatgt gttgcgcatc ttactgatga atgataaatt
2761 ctgacgttga tgggtgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaaaaa aaaaaa
//