LOCUS NC_013467 2814 bp DNA circular VRL 13-AUG-2018
DEFINITION Sweet potato leaf curl Lanzarote virus, complete genome.
ACCESSION NC_013467
VERSION NC_013467.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Sweet potato leaf curl Lanzarote virus
ORGANISM Sweet potato leaf curl Lanzarote virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus.
REFERENCE 1 (bases 1 to 2814)
AUTHORS Lozano,G., Trenado,H.P., Valverde,R.A. and Navas-Castillo,J.
TITLE New begomovirus species of recombinant nature in sweet potato
(Ipomoea batatas) and I. indica: taxonomic and phylogenetic
implications
JOURNAL J. Gen. Virol. (2009) In press
PUBMED 19515824
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2814)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2814)
AUTHORS Trenado,H.P., Lozano,G. and Navas-Castillo,J.
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2009) Virology, CSIC, Mayora Algarrobo-Costa,
Algarrobo-Costa, Malaga 29760, Spain
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 2814)
AUTHORS Trenado,H.P., Lozano,G. and Navas-Castillo,J.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2008) Virology, CSIC, Mayora Algarrobo-Costa,
Algarrobo-Costa, Malaga 29760, Spain
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to EU839579.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2814
/organism="Sweet potato leaf curl Lanzarote virus"
/mol_type="genomic DNA"
/isolate="ES:MAL:BG30:06"
/host="Ipomoea batatas"
/db_xref="taxon:574890"
/clone="BG30"
/country="Spain"
/collection_date="Sep-2006"
gene 43..441
/gene="V2"
/locus_tag="SPLCLaV_gp1"
/db_xref="GeneID:8559946"
CDS 43..441
/gene="V2"
/locus_tag="SPLCLaV_gp1"
/codon_start=1
/product="MP"
/protein_id="YP_003288781.1"
/db_xref="GeneID:8559946"
/translation="MMTLLYKDQSGCRAWRPSMAEMWDPLQNPLPDTLYGFRCMLSIK
YLQGILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSLWGETGKTEAELRDS
YRALHWECCPNCCPKLCPGFKRRPDEEKEG"
misc_feature 106..345
/gene="V2"
/locus_tag="SPLCLaV_gp1"
/note="Geminivirus V2 protein; Region: Gemini_V2;
pfam01524"
/db_xref="CDD:366689"
gene 266..1030
/gene="V1"
/locus_tag="SPLCLaV_gp2"
/db_xref="GeneID:8559941"
CDS 266..1030
/gene="V1"
/locus_tag="SPLCLaV_gp2"
/codon_start=1
/product="CP"
/protein_id="YP_003288782.1"
/db_xref="GeneID:8559941"
/translation="MTGRMRVSPRFHPYGGRQVRRRLNFETAIVPYTGNAVPIAARSY
VPVSRGVRMKRRRGDRIPKGCVGPCKIQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRL
GKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEP
TTAKIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYE
NQLENALMLYSASSHASNPVYQTLRCRAYFYDSHKN"
misc_feature 323..1027
/gene="V1"
/locus_tag="SPLCLaV_gp2"
/note="Geminivirus coat protein/nuclear export factor BR1
family; Region: Gemini_coat; pfam00844"
/db_xref="CDD:307130"
gene complement(1046..1480)
/gene="C3"
/locus_tag="SPLCLaV_gp3"
/db_xref="GeneID:8559942"
CDS complement(1046..1480)
/gene="C3"
/locus_tag="SPLCLaV_gp3"
/codon_start=1
/product="REn"
/protein_id="YP_003288783.1"
/db_xref="GeneID:8559942"
/translation="MDSRTGESLSHAQTTRAVEFNTNPMSVGRTAPFHLRIMYVHEST
QGRTILKFQLRVNHRERRQLGFHNIFLQFRILTTRLTGAIHSWTGILERLKWRICNEL
ANLGLFSLINLVFVIRYLPRVCSWIDEIDTIDCNDDVKVLLY"
misc_feature complement(1139..1477)
/gene="C3"
/locus_tag="SPLCLaV_gp3"
/note="Geminivirus AL3 protein; Region: Gemini_AL3;
pfam01407"
/db_xref="CDD:279715"
gene complement(1197..1643)
/gene="C2"
/locus_tag="SPLCLaV_gp4"
/db_xref="GeneID:8559944"
CDS complement(1197..1643)
/gene="C2"
/locus_tag="SPLCLaV_gp4"
/codon_start=1
/product="TrAp"
/protein_id="YP_003288784.1"
/db_xref="GeneID:8559944"
/translation="MSNPLSGYKRKCPIQEPLHIEAKKAKRKVPEQRTRIVWKGCGCS
AFITTNCKYQHGFTHRGITKSCSDYESSRIQHQPHVCGSDCTIPSQNHVCPREHTGEN
HPQIPTESQPQGKEAAGIPQHLPPIQDLDDPSNWCYSQLDWYFGTP"
misc_feature complement(1248..1607)
/gene="C2"
/locus_tag="SPLCLaV_gp4"
/note="Geminivirus AL2 protein; Region: Gemini_AL2;
pfam01440"
/db_xref="CDD:279747"
gene complement(1552..2646)
/gene="C1"
/locus_tag="SPLCLaV_gp5"
/db_xref="GeneID:8559945"
CDS complement(1552..2646)
/gene="C1"
/locus_tag="SPLCLaV_gp5"
/codon_start=1
/product="Rep"
/protein_id="YP_003288785.1"
/db_xref="GeneID:8559945"
/translation="MPRAGRFNIKAKNYFLTYPQCSLTKEEALDQLLHLNTPTNKKFI
KICRELHENGEPHLHVLLQFEGNYQCTNQRFFDLVSPSRSSHFHPNIQRAKSSSDVKS
YVDKDGDTIEWGEFQVDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIF
QYHNLCGNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIV
IEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMG
AQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFC
DVQSPFWVQEEVSHSGATAHRGEEGQEESS"
misc_feature complement(2290..2628)
/gene="C1"
/locus_tag="SPLCLaV_gp5"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1957..2271)
/gene="C1"
/locus_tag="SPLCLaV_gp5"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
misc_feature complement(1627..2025)
/gene="C1"
/locus_tag="SPLCLaV_gp5"
/note="or GDSL_hydrolase, is a diverse family of lipases
and esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the typical...; Region:
SGNH_hydrolase; cl01053"
/db_xref="CDD:445243"
gene complement(2232..2495)
/gene="C4"
/locus_tag="SPLCLaV_gp6"
/db_xref="GeneID:8559943"
CDS complement(2232..2495)
/gene="C4"
/locus_tag="SPLCLaV_gp6"
/codon_start=1
/product="C4"
/protein_id="YP_003288786.1"
/db_xref="GeneID:8559943"
/translation="MKMGNLISTCCCSSKGTTNARIRDSSTLFPHQGHHTFTLISREL
NPAPMSSPTSIRTVTQLNGVSSRSTADLLEEASRLLMTQQQRP"
misc_feature complement(2238..2489)
/gene="C4"
/locus_tag="SPLCLaV_gp6"
/note="Geminivirus C4 protein; Region: Gemini_C4;
pfam01492"
/db_xref="CDD:279790"
ORIGIN
1 accggtgccc gccgcgctcc cttttgtggg ccccacaagg gaatgatgac attgctttat
61 aaggaccaat caggttgccg tgcttggcgc ccaagtatgg ctgaaatgtg ggaccctctt
121 cagaacccac taccagatac tttatacggt ttcaggtgta tgctctccat aaaataccta
181 caaggtattt tgaagaaata cgagccagga accttagggt tcgagctctg ttcggagtta
241 atccgtatat tcagggtcag gcagtatgac agggcgaatg cgcgtttcgc cgagatttca
301 tccctatggg gggagacagg taagacggag gctgaacttc gagacagcta tcgtgcctta
361 cactgggaat gctgtcccaa ttgctgcccg aagctatgtc ccggtttcaa gaggcgtccg
421 gatgaagaga aggaggggtg accgcatccc taagggatgt gtgggtccct gtaagatcca
481 ggactatgag ttcaagatgg atgttcccca cacgggaacg tttgtctgtg tctcggattt
541 tacaaggggt acagggctta cccatcgcct gggtaagcgt gtttgtatta agtccatggg
601 tatagatggg aaggtatgga tggatgacaa tgtggccaag agagatcaca ccaatatcat
661 cacgtattgg ttgattcgtg atagaaggcc caataaggat ccgctgaact ttggccagat
721 cttcactatg tacgacaacg agcccactac tgctaagatc cgaatggatc tgagggatag
781 aatgcaagtc ttgaagaagt tctctgttac agtttcaggc ggtccataca gccacaagga
841 acaggcatta attaggaagt tttttaaggg tttgtataat catgttactt ataatcataa
901 ggaagaagct aagtatgaga atcagttaga gaatgctttg atgttgtata gtgctagcag
961 tcatgctagc aatcctgtgt atcagaccct gcgttgcagg gcttattttt atgattcgca
1021 caagaattaa taaactttta ttttattaat acagtaatac ctttacatca tcattgcaat
1081 ctatagtatc tatttcatct atccaagaac atactcttgg aagatatcta ataacaaaaa
1141 ctaaattaat caaactaaat aaccctaaat ttgctaattc gttacaaatg cgccacttaa
1201 ggcgttccaa aataccagtc caactgtgaa tagcaccagt tagacgggtc gtcaagatcc
1261 tgaattggag gaagatgttg tggaatccca gctgcctcct ttccctgtgg ttgactctca
1321 gttggaattt gaggatggtt ctcccctgtg tgctctcgtg gacatacatg attctgagat
1381 ggaatggtgc agtccgaccc acagacatgg ggttggtgtt gaattcgact gctctcgtag
1441 tctgagcatg acttagtgat tcccctgtgc gtgaatccat gctggtactt gcagtttgtg
1501 gtgatgaagg ctgaacagcc gcaacccttc cacactattc tcgtcctctg ttcaggaact
1561 ttcctcttgg ccttcttcgc ctctatgtgc agtggctcct gaatgggaca cttcctcttg
1621 tacccagaaa ggggattgga catcgcagaa tatagcgttt gctgttgccc aatttttgag
1681 tgctccttgc tctggtttgt ccaaccagag tttaaatgag gagccctctc ctggattgca
1741 gaggaagata gtgggaattc cacctttaat ttgaactggc ttcccgtatt tacagttgga
1801 ttgccagtcc ttctgggccc ccatgaattc cttaaagtgc tttaagtatt gggggttgac
1861 gtcatcaatg acgttatacc aagcactatt gctgtatact tttgggctta aatctaaatg
1921 cccacataaa tagttatgtg ggcccaatga cctggcccat actgttttgc cgattctgct
1981 tgggccttca ataactatgg atatgggtct atccggccgc gcagcggaat ccatgacatt
2041 ttcagcggcc cagtcgctga taatgtcagg aacggcattg aaagaagaag aagaaaaagg
2101 ggaagaatac acagaaggag gaggagaaaa aatcctatct aaattaccac ataagttgtg
2161 gtattgaaaa ataaatttct caggtagttt ttccctgatg atttgtaagg ccgcttcttt
2221 gctgcctgaa tttaaggcct ctgctgctgc gtcattagca gtctgctggc ctcctctagc
2281 agatctgccg tcgacctgga actcacccca ttcaattgtg tcaccgtcct tatcgacgta
2341 ggacttgaca tcggagctgg atttagctct ctggatatta gggtgaaagt gtgatgacct
2401 tgatggggaa acaaggtcga agaatctctg attcgtgcat tggtagttcc cttcgaactg
2461 caacagcacg tggagatgag gttccccatt ttcatgcagc tctctgcata tcttgatgaa
2521 ttttttattg gttggggtgt tgagatgaag aagctgatcg agagcttctt ctttggtaag
2581 agaacattgg ggatatgtaa gaaaatagtt tttggctttt atattaaaac gccctgctct
2641 cggcatgttg aaaagcaaat ggtggaacac aaagtcctgt atgaattggt ggaacggtgg
2701 acaatttata tgtgtccacc aaatggcatt ttggtaattt agaagatcct tttaccttta
2761 attcaaattc cgacatttct gggaccacca aaaggcgggc accgtattaa tatt
//
