LOCUS       NC_014511               3274 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 1, complete genome.
ACCESSION   NC_014511
VERSION     NC_014511.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 3274)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3274)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to GU733443.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="1"
                     /country="Germany"
                     /collection_date="2005"
     gene            19..3258
                     /locus_tag="RV-Ds1_gp1"
                     /db_xref="GeneID:9742381"
     CDS             19..3258
                     /locus_tag="RV-Ds1_gp1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="YP_003896046.1"
                     /db_xref="GeneID:9742381"
                     /translation="MGTYNLLLQKYLRWLYGKDATVIPIFITNDQNNQEILNSIVDYA
                     KQLAIDDKYDYKLIEDKLSKCNFDYEIVSFFTYSDQKYDNVEQKLLKYVNKKKVLVAD
                     LTRNKLKYENNYITKDLYTEDDYTDTLMDPSINTSLRSNLNAAMFVIENIEDKKIQSR
                     YRHLFEYVASTVSHYGIPVHNQKYRYDYKEMYNKPYYLVPWANSSIEMIFAVSSHELY
                     LVAEELIINSFSNRSTLAKLTSSPMTTLTSKLDLYSCYMTTEDLELEYSDKIVKSYIT
                     DEAQLELDEQIAELRKEKMTKTADIIDEWQRNPSIDTFPLMAQIYSFSFHVGYRKQMM
                     LDAVTDQLSIEYSDTFDKDMYNMYTNNIIKIIDDMLRDHIKKEDKMLLNAEIAGLLSM
                     SSASNGESRVIKFGRRTVRSTKKNMHVMDDIFNKQYDLDVPDVNENNPIPLGRRDVPG
                     RRTRVIFILPYPYFIAQHSVVELYLRESKHIKEFSEFYSQSSQLLSYGDTNRYLNQST
                     IIVYADVSQWDSSKHNTTPLRNAILKAIEQLKSYTTNEKVITALNNYALTQMKLKNSF
                     VTIGNKVLQYGAVASGEKQTKLMNSIANLALITTVINYLNVGESYRIKIIRVDGDDNY
                     FIMEFDRKVDKQLVTVVSNAVKDTYGRMDVKVKALTATTGLEMAKRYIAGGRLFFRAG
                     VNILNNEKRTHTTTYDQAAIIYANYLVNKMRGYNMERIFILCKIMQMTSVKITGSIRL
                     FPASLMLTTNSPYKVFDDVDFVQTYNSSTIAIHLQKMLISVSQVKSNLADDIAKSEKF
                     TNYVQFLTKKLLVHNNKIVEMGIARTEKAKLNSYPPIANEKRNNQLKTLMTFLQTPTY
                     KMSTDVTINDMMKIINEYTNYTIITDKYGIQPNPMPLLPENIQFAMSHVGARVYQIEE
                     SAARSAISKLISNYTVYKPSVDELYKVINSNERILFEYVTSFGVPTRDVTAYLSAKLY
                     KKDRNLILESYIYQIMSVNYNAYQLFNLNSELFDKYINIVTYMKIPSVNFIIFTYLKL
                     VILNKMLQERKLYKAYCQIPKHLLHILWKMSINLATISSPYTIANFFQE"
     misc_feature    334..2091
                     /locus_tag="RV-Ds1_gp1"
                     /note="Reverse transcriptase (RT, RNA-dependent DNA
                     polymerase)_like family. An RT gene is usually indicative
                     of a mobile element such as a retrotransposon or
                     retrovirus. RTs occur in a variety of mobile elements,
                     including retrotransposons, retroviruses, group...;
                     Region: RT_like; cl02808"
                     /db_xref="CDD:445932"
     misc_feature    2320..3255
                     /locus_tag="RV-Ds1_gp1"
                     /note="Rotavirus VP1 C-terminal domain; Region:
                     Rotavirus_VP1; pfam12289"
                     /db_xref="CDD:403490"
ORIGIN      
        1 ggcaattaaa gtggtaggat ggggacctat aacttactct tacagaagta tttgagatgg
       61 ttgtatggga aagatgcaac agtaattcca atatttataa cgaatgatca aaataatcag
      121 gagattttga atagtatagt tgattatgct aaacagttag caattgatga taaatacgat
      181 tataaactaa tcgaagataa gttgtcaaag tgtaactttg actatgaaat agtgtcattt
      241 tttacttatt ctgatcagaa gtatgataac gttgaacaga aattattaaa atatgtgaat
      301 aaaaagaaag tgttggttgc agatcttact agaaacaaat taaagtatga gaacaattat
      361 ataaccaaag atctttatac tgaagatgac tatacagata cattaatgga tccatcaatt
      421 aatacatcat tacggtcgaa cttgaatgca gctatgttcg taatagaaaa tatcgaagat
      481 aagaaaatac aatcgagata caggcattta tttgaatatg tggcttcaac tgtatcacat
      541 tatggtattc cagtacataa ccaaaaatat agatatgatt ataaggaaat gtataataaa
      601 ccatattatt tagttccatg ggcaaattca agtatagaga tgatatttgc tgtttcgagt
      661 catgaattat atttagttgc tgaggaatta ataattaatt catttagtaa tagatcaact
      721 ttagcgaaac ttacttcctc accaatgaca actctaacat cgaagctgga tttgtattct
      781 tgttatatga ctactgaaga cttggaatta gaatattcag ataaaatagt aaaatcgtat
      841 ataactgacg aagcacaact agaattagat gaacaaatag ctgaattaag aaaggaaaaa
      901 atgacaaaaa cagcagatat aattgatgaa tggcaacgga atccgagtat agatacattt
      961 ccactaatgg ctcaaattta ctcattttca tttcacgttg gatacagaaa acagatgatg
     1021 ttggacgcag taactgatca attatcaatt gagtattcag atacttttga taaagatatg
     1081 tataatatgt atactaataa tatcataaaa attatagatg acatgcttag agaccatatt
     1141 aagaaagagg ataagatgtt attgaatgca gaaatagctg gattattatc gatgtcttct
     1201 gcctcaaacg gtgaatcaag agtcattaaa tttggcagac gaacggtaag atcaactaag
     1261 aagaatatgc atgtaatgga tgatatattt aataagcaat atgatttaga cgttccagac
     1321 gttaatgaaa ataatccgat tccattagga agacgtgatg taccaggaag aagaacaaga
     1381 gtaatattta ttttaccata tccgtatttt attgctcagc attccgttgt agagttatat
     1441 ttacgtgaaa gtaaacatat aaaggagttt tcagaattct actcacagtc ttcgcagcta
     1501 ctatcatatg gtgataccaa tcgatatttg aatcagtcaa ctattatagt ctatgctgat
     1561 gtgtcacaat gggattcatc aaagcataat actacgccgt tacgtaatgc aattttgaaa
     1621 gctattgaac aattgaaatc gtacacgaca aatgagaagg ttattaccgc attaaataat
     1681 tatgcattaa ctcagatgaa attgaagaat tcttttgtca ctataggtaa taaggtgtta
     1741 caatatggag cagtagcttc gggtgaaaaa cagactaaat taatgaattc aatagcgaat
     1801 ttagcattaa ttacgactgt aataaattat ctaaacgtgg gagaatcata tagaattaaa
     1861 attataaggg tagatggtga tgataattat tttatcatgg aattcgacag aaaggttgat
     1921 aaacaattag ttacggttgt gtcaaatgca gtgaaagaca cttatggaag aatggatgta
     1981 aaagtgaaag cattaactgc tacgacagga ttagagatgg ctaaaagata tattgctggt
     2041 ggtagactgt tttttagagc aggagtaaat atattgaaca acgaaaaaag gacacataca
     2101 acgacgtatg atcaagcagc aataatatat gctaattact tagttaacaa gatgagagga
     2161 tataacatgg aacgaatatt catattatgt aaaataatgc aaatgacgtc agtgaaaata
     2221 actggttcaa taagactatt tccagcatca ttaatgctca ctacaaattc accatataaa
     2281 gtatttgacg atgttgattt tgtacaaacg tataacagca gtactatagc tatacattta
     2341 caaaaaatgt taatttcagt atctcaagta aaatcaaatt tagccgatga tatagctaaa
     2401 tcggaaaaat ttaccaatta tgtacagttc ttaactaaaa aattgttagt gcataacaat
     2461 aagattgtag aaatggggat agcacgtact gaaaaagcta agttaaattc atatccacca
     2521 atagcaaatg agaaaagaaa taatcaattg aagacattaa tgacattttt acaaactccg
     2581 acatataaaa tgtcgaccga tgtaacaata aacgacatga tgaaaataat taatgaatac
     2641 actaattata ccataataac tgataaatac gggatacaac ctaatccaat gccgttatta
     2701 cctgagaata tacaatttgc tatgtcacac gttggagcga gagtttatca aattgaagaa
     2761 tctgctgcaa gatcagcgat atctaagtta atttcaaatt acactgtata taaaccttca
     2821 gtagatgaat tatataaagt cattaatagt aatgaaagaa tattatttga atacgtaaca
     2881 tcatttggtg taccaacaag ggatgttaca gcgtatttat cagctaagct gtacaagaaa
     2941 gacagaaact taatattaga gtcttatatt tatcagatta tgtcagttaa ttacaatgca
     3001 tatcagcttt ttaatttgaa ttcagaatta ttcgataaat atatcaatat agtgacttat
     3061 atgaaaattc catcagtcaa ctttattatt ttcacgtatt taaagttagt tatactcaat
     3121 aaaatgttac aagagagaaa actatataaa gcatattgtc aaataccgaa acatcttctg
     3181 catatattat ggaaaatgtc aattaattta gctacaatat catcgccata cactatcgca
     3241 aacttctttc aagagtaatc acttacttgt gacc
//