LOCUS       NC_014512               2801 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete genome.
ACCESSION   NC_014512
VERSION     NC_014512.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 2801)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2801)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence is identical to
            GU733444.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="2"
                     /country="Germany"
                     /collection_date="2005"
     gene            40..2781
                     /locus_tag="RV-Ds2_gp1"
                     /db_xref="GeneID:9742379"
     CDS             40..2781
                     /locus_tag="RV-Ds2_gp1"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="YP_003896047.1"
                     /db_xref="GeneID:9742379"
                     /translation="MRKNKLIQDKEREKSKSKDETRTERGKTDRNTTNSLKNGVETDC
                     NDGNCVDNVNVDSKNDKKEERTKKDYIKSEKKSDGASDTKEKENGSKDKVVSNEENKK
                     NEKELAEILKTKEEVTKDLDKEIFYKYIPTFDVNIDIVKKMLDIPSVSPKDEKTLFRL
                     FDLKNLPLYDTSAVRTLETRWVWKLKKDDLPDDSYSVREYFQGLYEHILSIIPDYIML
                     RNMAVDNTRSRYNGKIVDKESLDIVNKLFVDDQIDNQIRLYISDMNHTTIARTNTIIY
                     PAIMNPIDHEFNEYFLNAQLIEELNTGVIMNMIPRQLRADSNYNFALENSFNHTARYL
                     PQLLMQDRIAIHEISSLWDSMTTANYVLARSVIPDLKDLLPADVQITEMAANLNLEAL
                     TTQVETAYLSGITTESANECFKIIIASLLSTRTISMSYSGNNYVSLFSGMYLLSIIPF
                     NSMLRESVISLQLAIVNSILYPAFGLPQLTYTYLDQDTPFMIAQQTISNRRVREWLQH
                     VNNFDFPRVNRDGVFVYTVPDRIRYGNIVNLFSETVTELANQQFRTYTLEYQRAIKRA
                     IQLFVRRVPQILDLTRLMFYNYEVLLRMIVMSQQRMITLTTEKLDLTRVTSLLFLISN
                     TVVFPDPQSLMRYYSANRNFLNNYNERIDDTVARLYASNRLNLYRKKVLSIVTDFVRN
                     LYIFEATKVPADQMYNLRDRLRRLPLENRRQRVFDIMMNNQDQIIHASDKIAHGVVLF
                     RNERELINDEYEGLTNVVRNIDGNALSIEEIRNRGDYQPLIDSLLQTNSVALKGVIPF
                     NTTHNPFELIAKVDVSIFAPVLKDRDINKLKPVKYAINSDSQSFYIVANNNWKPTSST
                     AVYKLQPRQFDFTQSLFQLTSRLFFQVFKDPLTFLTIRTVDPIIAVASDNRRIILSV"
     misc_feature    190..2769
                     /locus_tag="RV-Ds2_gp1"
                     /note="Rotavirus VP2 protein; Region: Rota_VP2; pfam05087"
                     /db_xref="CDD:398657"
ORIGIN      
        1 ggcatataaa ctgcgacact gataatcttt cttgttacga tgcgaaagaa taaactaata
       61 caagataaag agagagaaaa atctaaatct aaagatgaaa caagaaccga gcgaggaaag
      121 actgatagaa acactacaaa ttcgttaaaa aatggagtag agacggattg taatgatggt
      181 aactgcgtgg acaatgttaa tgtagatagt aaaaatgata aaaaagaaga gagaacgaaa
      241 aaagattaca ttaaaagtga aaaaaagagt gacggtgcat ctgatactaa agagaaagaa
      301 aatggatcta aggataaagt tgtatcaaat gaagagaata agaaaaatga aaaggagcta
      361 gcggaaattc tgaaaacaaa agaagaagtt actaaagact tagataaaga aatattttat
      421 aaatatatac cgacatttga tgttaatata gatattgtta agaaaatgtt agatatacca
      481 tctgtttcgc caaaggatga gaaaacatta tttagattat ttgatttaaa aaacctgcca
      541 ttgtatgata cttcagcagt taggacacta gaaacgagat gggtgtggaa gcttaaaaaa
      601 gatgatttgc cagatgattc ttactcagtg cgtgagtact ttcaaggttt atatgaacac
      661 attctatcaa taataccaga ttatataatg ttgaggaata tggctgtgga taatactaga
      721 tcgagatata atggaaaaat tgttgataaa gaatcattag atatagttaa taaattattt
      781 gttgatgatc agatagataa ccaaattagg ctttacattt cggacatgaa ccatactact
      841 atagcaagaa caaatacaat tatatatccg gctattatga atccaataga tcacgagttt
      901 aatgaatatt ttttgaatgc tcagctgatt gaagaattaa atactggagt aattatgaat
      961 atgattccaa gacagctaag agccgattct aactacaatt ttgctttaga aaattcgttt
     1021 aatcacactg ctagatattt acctcagttg ctaatgcagg ataggatagc aattcatgaa
     1081 ataagttcac tatgggattc aatgacaacc gcaaattacg tattagctag atcggttatt
     1141 ccagatttga aggatttatt accagctgat gttcaaatta ctgagatggc tgctaatcta
     1201 aatttggaag cattaaccac acaagttgag acagcttatt tatcaggtat aacgactgaa
     1261 tctgcaaatg aatgttttaa aataattata gcatcacttc tatctacacg tactatatca
     1321 atgagttatt ccgggaataa ttatgtttca ttattctctg gaatgtattt actatcaatt
     1381 ataccattta attcaatgct acgtgagtca gttatatctc tacagctagc aattgtaaat
     1441 tcaattcttt atccagcgtt tggtctacca caacttacgt atacatacct agatcaagat
     1501 actccattta tgatagctca acaaactatt agtaatagaa gagtacgaga atggctacag
     1561 cacgttaata actttgattt tccaagagta aatagagacg gtgtatttgt atatactgtg
     1621 ccagatagaa ttaggtatgg taatatagta aacttattct ctgaaacagt gacagaatta
     1681 gcgaatcaac agtttaggac gtatacttta gagtatcaaa gagctatcaa aagagcaatt
     1741 cagttatttg ttaggcgtgt tccacaaata ctagatctga cgagattgat gttttacaac
     1801 tatgaagttc tattacgtat gatagtaatg tcacagcaac gaatgataac tttaactact
     1861 gaaaaattag acttaactag agtaacatct ttgctattcc taatatctaa tacagttgtc
     1921 tttccggatc ctcaatcttt aatgagatat tactcagcga ataggaattt tctgaataac
     1981 tataatgagc gtattgatga tactgtcgct agattatatg cgtcaaatag attaaatttg
     2041 tatcggaaga aagtattatc aattgttact gattttgtta ggaacttata tatttttgaa
     2101 gcaaccaagg taccagcaga tcaaatgtat aatttacgag atagattaag acgtctaccg
     2161 ttggaaaaca gaaggcagag agtctttgat attatgatga ataatcagga tcagataatt
     2221 catgcatctg ataaaatagc acacggtgtt gtgttgttca gaaatgaacg agaattaatt
     2281 aatgatgaat atgaaggatt gacaaacgta gttcgtaaca tagatggaaa cgcactatct
     2341 attgaagaga tacgtaatcg tggagattat caaccactca tcgatagttt attacaaact
     2401 aattcagttg ccctcaaggg agttatacca ttcaatacga cacataatcc gttcgaactg
     2461 atagcaaagg tcgatgtgtc aatttttgca ccggtactta aggatagaga cattaataaa
     2521 ttaaaaccag ttaaatacgc aataaactct gattcacagt cattttacat tgtcgcaaat
     2581 aataattgga agccgacatc atcaactgca gtatataagt tacaaccacg acaatttgat
     2641 tttacacagt ctctatttca gcttacgtca agactatttt tccaagtatt taaagatccg
     2701 cttactttcc taactatacg aactgtggac ccgataattg cagtcgctag tgacaaccga
     2761 aggattatct taagtgtgta ggccactgtg cctttgtgac c
//