LOCUS       NC_014513               2366 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 3, complete genome.
ACCESSION   NC_014513
VERSION     NC_014513.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 2366)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2366)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence is identical to
            GU733445.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="3"
                     /country="Germany"
                     /collection_date="2005"
     gene            10..2343
                     /locus_tag="RV-Ds3_gp1"
                     /db_xref="GeneID:9742377"
     CDS             10..2343
                     /locus_tag="RV-Ds3_gp1"
                     /codon_start=1
                     /product="VP4"
                     /protein_id="YP_003896048.1"
                     /db_xref="GeneID:9742377"
                     /translation="MASSLWTSLNASLQDLDIYNRLDKKENHETKNQNIVNTTMLGTA
                     SLGPVKWSSGPTFNSSLTEGMLGPNSQQSMNTSQLVQLFSSYGSPFYVYFDYSNTSTN
                     NLAHQLVRFQTLKNDQSTREEGIFLCESQCNGITFAGHTLNLTTGTVKIVKVWENDTA
                     TALGSMYYNYPAGYVLSASLKLEHTANNTITVKLYNPTARLYGDENVHQAGQQIFAIT
                     SAYYVSKVDPGDLITTPASAPQLYAFEVEENLYNIVRQQPNCRSRKLNGLANINMQMT
                     TYDADVSVEEVISKESLWKEVRYANDIELKLVLKSVITRASGLGYKFASAVFKPHSYD
                     YNYMRGTERVNAYVTSSVNNIFVTSENGPLPTDFGIDELQYIGVDTLVYLDYYDDSNA
                     FKNMVYVRSLDAQFNDILLRKPHNTGYDTEITLPCCPSGKHLYSNSPRNLTLSYQGVM
                     LSTQYTDTYAVNSLRFIFKCTAADRAVFDRMVYNGIEASAITTLYMNSSGPTTTGRFS
                     FISLIPSNDAYQTPIQSSVTVRQDLDKDIAKLREEFNALSQEIAVNQLIETAMLPLDV
                     MSTSGAVASGASTISTSIKNVSKQFSKSKASITLTSFKNLSDIVDSVPTDQLAKNLNH
                     VSKRSIGTQFEDITAAVVKKTMDKGIGTDDMAELITDIADSAIPVRAYRVIDKSENAV
                     YEVSSIGKAIKYDTELTQLPFDEIKFKKLISESPVISAIIDFQTLKLYNQTFGKIDAN
                     VLDNFLASNPEILLKMVNEKNPIITDRIKTLIEQCRI"
     misc_feature    853..1548
                     /locus_tag="RV-Ds3_gp1"
                     /note="Rotavirus VP4 membrane interaction domain; Region:
                     Rota_VP4_MID; pfam17477"
                     /db_xref="CDD:407512"
     misc_feature    1582..2340
                     /locus_tag="RV-Ds3_gp1"
                     /note="Rotavirus VP4 helical domain; Region: VP4_helical;
                     pfam17478"
                     /db_xref="CDD:435918"
ORIGIN      
        1 ggcaataaaa tggcttcatc gttatggact agtttgaacg catcactaca agacttggac
       61 atctataata gattagacaa aaaagaaaac catgagacaa agaatcagaa tatagtgaat
      121 acaacaatgc ttggtactgc ttcattagga ccggtaaaat ggagttctgg accaactttt
      181 aattcatcat taacggaagg aatgttggga ccaaattcac agcagtcaat gaatacttcg
      241 cagttagtgc aactattttc atcttatggg tcaccattct atgtgtattt tgattattca
      301 aacacatcaa caaataatct tgcacatcag ttggttagat ttcagacact gaaaaatgat
      361 caatctacaa gagaagaggg aatattcctg tgtgaaagtc agtgtaatgg aatcacgttt
      421 gctggacata cattgaattt aacaactggg acagtcaaaa ttgttaaagt ttgggaaaat
      481 gacactgcta ccgcgctagg gtcaatgtat tataactatc cagctggtta tgtattatca
      541 gcttcactta aattggaaca tacggcgaat aatactataa cagttaaact ctacaatccg
      601 actgctagat tatacggaga cgaaaatgta catcaagctg gacaacagat ttttgctatt
      661 acttcagcat attatgtgtc gaaagtagat cctggggatt taattacaac gccagcatca
      721 gctccacaac tttatgcttt tgaagttgaa gaaaatttat ataacatagt taggcaacaa
      781 cctaattgca gatcaagaaa attaaatggt ttagcaaata taaatatgca aatgacgacg
      841 tatgatgctg atgtttcagt agaagaagtg atatctaaag aatcattatg gaaagaagta
      901 agatatgcta atgacataga attgaagtta gtacttaagt cagtgataac tagagcgtct
      961 ggattaggat ataaattcgc gtcagcagta ttcaagccac attcttacga ttataattat
     1021 atgagaggga ctgaaagagt taatgcatat gtgacttcat cagtaaataa tatattcgtg
     1081 acttcggaaa atggtccttt accaacagat tttggaatag atgaattaca atatatagga
     1141 gttgatacat tagtttattt agattactat gatgattcaa atgcattcaa aaatatggta
     1201 tatgtgaggt cattagatgc acaatttaat gatatattgt tacgaaaacc acataataca
     1261 ggctacgata cagaaattac actaccatgc tgccccagtg gaaagcattt atattcaaat
     1321 agtccaagga atttaactct atcatatcaa ggcgtaatgc tgtctactca atatactgat
     1381 acctatgccg taaactcatt acgatttata tttaaatgta cagcagctga tcgagcggtg
     1441 ttcgatagaa tggtatacaa tggaattgaa gcttcagcga tcacaacatt atacatgaat
     1501 tcatcagggc caacaactac tggaaggttc tcatttatat ctctgatacc atcgaatgac
     1561 gcttatcaga ctccaattca gtcctcagtt accgtaagac aagatctgga taaagatata
     1621 gcgaaattaa gagaagaatt taatgcactt tcacaagaaa tcgctgttaa ccaactgatt
     1681 gaaacagcaa tgttgccact cgacgtaatg tcaacgtccg gagcagtagc atcaggagca
     1741 tcaacgatct ctacatcaat taaaaacgtc tcaaaacaat tctctaaatc aaaggcatca
     1801 ataactttga catcatttaa aaatttgtca gatatagtgg attcagtacc aactgatcag
     1861 ttggcaaaaa acttgaatca tgtgtcaaaa cgatccattg ggacccaatt tgaagacata
     1921 actgcagctg tcgtcaagaa aactatggat aagggaattg gtacagatga tatggcagaa
     1981 ttgattacag atattgctga ttcagcaata ccagttagag cttatagagt aatagacaaa
     2041 agtgaaaatg ctgtatatga agtgtcatct atagggaaag ctattaaata tgacacagaa
     2101 ctaacccagt tgccatttga tgagattaaa tttaagaagc tgatatctga gtcgccagtt
     2161 atatcggcta taatagactt tcagacatta aagctatata accaaacttt tggtaaaata
     2221 gatgctaatg tattagataa tttcttagct tcaaatccag aaattctgct taagatggta
     2281 aatgaaaaga atcctatcat aacagataga attaaaacat taattgaaca atgtagaatc
     2341 tagtccataa tcgtactatt gtgacc
//