LOCUS       NC_014514               2104 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 4, complete genome.
ACCESSION   NC_014514
VERSION     NC_014514.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 2104)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2104)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence is identical to
            GU733446.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="4"
                     /country="Germany"
                     /collection_date="2005"
     gene            15..2072
                     /locus_tag="RV-Ds4_gp1"
                     /db_xref="GeneID:9742375"
     CDS             15..2072
                     /locus_tag="RV-Ds4_gp1"
                     /codon_start=1
                     /product="VP3"
                     /protein_id="YP_003896049.1"
                     /db_xref="GeneID:9742375"
                     /translation="MRLVVCSDEQSKTPLVNATLYRYRSNVHPAENAFLACNQIAEII
                     LVINCSNFDKFSENVRSNGICCVDTRGNDDLFKSVVSGNCLFNENEVITIDYGYYRYK
                     TLRTMFTYIFSFPKTEFKWESVPPSELCNDDDILTNYLYRSDKSVKFEEFIQQKILER
                     LSFALRHEKYESRLLRTKVYNLYKNEKPIVIGPRNESMFELLSLNFTYYSANEFTVKD
                     LSSLQSSRFREITLNEFDVGQYKNMLNFLSLYYYHVNHYGLPNRIVIIGSYPSKWLIL
                     LRNSGLNCEIILYDVKLDDSQKDIREFVFRNKFYTFDDSYTDIIDNSIVYLDARIEYS
                     RDSEIDRRKKIELDTKIYFEWCDRLVRHFNKVTIMCKYTAMNGNLYKNIKLVNHIRTS
                     IRSEVYLLFNIDDVSSEKVYIDKGKIYSFIQNHITDNVFIGKTFKVTKINKSTRPVVA
                     LYSLSNTLNDRKLCLSYINTTRRGILTYRARNNFTNEDLISYDKFKDYSCLRTELKSS
                     DNSIVTSLSGALGVFGCQTTFNDKADGNVHFHVIKGIERTNIDKYALHLQISRRSQFL
                     RFTETATSLSGYLFRDLASEGFSNDLSETDSNNAASGHVYNALIYFRYNWRFDLIYWM
                     EKHINSNQIQSVGTNYYKHSIREIVNAINAAKKYAELQNDETLINYINTLIQLYPTNL
                     LRR"
     misc_feature    105..2036
                     /locus_tag="RV-Ds4_gp1"
                     /note="Rotavirus VP3 protein; Region: Rotavirus_VP3;
                     pfam06929"
                     /db_xref="CDD:399720"
ORIGIN      
        1 ggcttttaaa gcacatgaga ctagtagtgt gtagcgatga gcagtctaag actccattgg
       61 ttaatgcaac tctatatagg tatcgatcta atgtacatcc agctgaaaat gcatttctcg
      121 catgtaacca aatcgctgaa atcatactcg ttattaattg ttcaaatttt gataaattta
      181 gtgaaaatgt taggtcgaat ggcatttgct gtgtggacac tagaggtaat gatgatcttt
      241 ttaaatctgt tgtatctgga aattgtttat ttaacgaaaa tgaagttatt actattgatt
      301 atggttatta taggtataaa acgttacgaa ccatgtttac gtatatcttt agctttccga
      361 aaacagaatt caaatgggaa tcagtaccac caagtgaact gtgcaacgat gatgacattt
      421 taactaatta tttatataga agtgataaat cagttaaatt tgaggaattt attcagcaga
      481 aaatattgga aagactatct tttgcgttac gacacgaaaa gtatgaaagt aggctactga
      541 gaacaaaagt atataatcta tataaaaatg aaaaaccaat agtaataggt cctaggaatg
      601 aatcgatgtt cgagctatta agtttaaact ttacatacta ttcagcgaat gaatttacag
      661 ttaaagatct atcatcatta caatcatcta gatttcggga aattactttg aatgaatttg
      721 atgtggggca gtataaaaac atgttgaatt ttttatcttt atattattat cacgttaatc
      781 attatggatt accaaatcgt atagtaataa taggatcata tccatctaaa tggttaatat
      841 tgctacggaa ttcagggctg aattgtgaga ttatactata tgatgtgaaa ttagatgata
      901 gtcaaaaaga cataagagaa tttgtattta ggaataaatt ttatacattt gatgactcgt
      961 acacagatat aatagataat tcaatagttt atctagatgc tagaattgag tattcacgag
     1021 atagtgaaat agatcgtcgt aaaaagatag aattagatac taaaatatat tttgaatggt
     1081 gtgatcgtct agtcagacac tttaataaag taactattat gtgcaaatat acagctatga
     1141 atggtaattt atacaaaaat attaaattag taaatcacat cagaacatct attagaagtg
     1201 aagtgtattt attatttaac atagatgacg ttagttcaga gaaagtatat atagataaag
     1261 gtaagatata ttcatttata caaaatcaca taacggataa tgtgtttata ggaaaaacct
     1321 tcaaagtaac taagataaat aaaagtacca gaccagtagt tgcattatac tctctatcaa
     1381 atacgttgaa tgacaggaaa ttatgcttat catatatcaa tacgacgcgg agaggtattt
     1441 taacatatag agccagaaat aattttacaa atgaggatct aatatcttat gataagttta
     1501 aagattattc atgtttgcgt actgaattaa aatcaagtga taattcaata gttacttcat
     1561 tgtcgggagc gttaggagtg tttggttgtc aaacaacatt taatgacaaa gctgacggta
     1621 atgtccattt tcatgtcatt aagggaatag agagaactaa tattgacaaa tatgctttgc
     1681 acttacaaat atccagaaga tcacaatttt tgagatttac tgagacagcc acatcattat
     1741 caggttattt atttcgtgat ttggcgtcag agggattctc caatgattta agtgaaactg
     1801 atagtaataa tgctgcttcg ggccacgttt ataacgctct gatatacttt agatacaatt
     1861 ggagattcga tttaatatat tggatggaaa aacatataaa tagtaatcaa attcagtcgg
     1921 ttggaacaaa ttactataaa cattctataa gagaaatagt gaatgctatt aatgcagcta
     1981 aaaaatatgc ggaattgcaa aatgacgaaa cgttaattaa ttatatcaac acattgattc
     2041 agttgtatcc taccaatctt cttaggcggt aacacgcagt cctgctcatc ccctttatgt
     2101 gacc
//