LOCUS       NC_014515               1872 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 5, complete genome.
ACCESSION   NC_014515
VERSION     NC_014515.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 1872)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1872)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence is identical to
            GU733447.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="5"
                     /country="Germany"
                     /collection_date="2005"
     gene            38..1762
                     /locus_tag="RV-Ds5_gp1"
                     /db_xref="GeneID:9742373"
     CDS             38..1762
                     /locus_tag="RV-Ds5_gp1"
                     /codon_start=1
                     /product="NSP1"
                     /protein_id="YP_003896050.1"
                     /db_xref="GeneID:9742373"
                     /translation="MATRQLRFEYSVLKFTLANQYSIIKSSDYVSQMRWLEDKKPNVT
                     LWRTLNPTQMNKSEPCGNCLTCGCFHNVYSCDFCSVNHICKSCKQNYSDLCPFSLKQS
                     RFMMDMIDCGPIWELTEDILYEKLQPLYLKYFHVLSNPNYEKIAMEDRHRRCIGARIH
                     YGSTIHADINDCFLPSSVIAFRAMKNSQLHTFLIFGHYEPALNRENMLSYTHLNLRRY
                     RKVSDFIDIYNIRLAMTRGNSTRPMITLDISANAESIPVISQQTCINSYTHTYDSDLK
                     SISLALIVNNNGNLTLRRPILDCLNSYNVMKEMFIARLVKYLNLELPHMLQKHYKTML
                     ELSYSIRTPDKGVFSVSYPIFDDELLITMLQNFELVKYLVEYAVHVSEHFNQQDEIDE
                     SCPICADFMSFEQQFEMAYNITKCRRDCEVIFVPSDDLSGLFTVRHVCREGLLIHEIP
                     FKLRMLILTITQSVRVNRGIHQLNSYPSWYADVDQDQGDDLDKLQRLWPLSLNTLWNV
                     IRQKQLKPLNYTVISEEDEDGIAFTEEDEEGIMLIDKPNEYKWLRYVTCVIGPDTDEE
                     IEFYDGPY"
ORIGIN      
        1 ggtttttaaa agacctttat acaatcagtg cgtcactatg gcgacgagac aactaagatt
       61 tgaatactca gttttgaaat ttactttagc taatcagtat tcgatcataa agtcgagtga
      121 ttacgtttca cagatgagat ggctggagga caaaaaacca aatgtaactc tttggcgtac
      181 tttaaatcca actcagatga ataaatctga accgtgtgga aattgtctta cgtgtggatg
      241 ctttcacaat gtgtattctt gtgatttctg ttcagttaac catatctgta aatcatgcaa
      301 acaaaactac tctgatcttt gccctttttc acttaaacaa tctcgcttca tgatggacat
      361 gatagattgt ggaccaattt gggaactgac ggaagacata ctgtatgaaa agctgcaacc
      421 actgtacttg aagtactttc atgtgctatc aaatccaaat tatgaaaaaa ttgcaatgga
      481 ggacagacat cgcaggtgca taggtgccag aatccattat ggatcaacaa ttcatgctga
      541 catcaacgat tgctttctgc caagtagcgt tatagccttt agagctatga agaattctca
      601 gcttcacact tttcttatct ttggacatta tgaaccagca cttaatcgag aaaacatgtt
      661 gtcatacacg catcttaatt tgaggcgata caggaaagta agtgacttca tcgacatcta
      721 caacattaga ttggcaatga caagaggaaa ctcgactaga ccaatgatta cattggacat
      781 ttctgcaaat gcggaatcaa ttccagtgat tagccaacaa acatgcatta acagctatac
      841 tcatacttat gattctgatt tgaaatcaat aagtttagcg ctaattgtga ataataatgg
      901 gaacttgacg cttcggagac caattctaga ttgcttaaat tcatacaacg tgatgaaaga
      961 aatgttcatt gcaagattag tgaaatattt aaatttagag ttaccgcata tgctacaaaa
     1021 acattataaa acgatgctgg aattgtcata ctcaatacgc acaccggata agggtgtgtt
     1081 ctcagtatct tatccgattt ttgatgatga actacttatc accatgttgc agaattttga
     1141 attagtgaaa tatttagttg aatatgccgt ccatgttagt gaacacttta atcaacaaga
     1201 tgaaattgac gaatcatgtc ccatctgtgc agacttcatg agctttgagc aacagtttga
     1261 gatggcgtac aatataacaa aatgtagacg tgattgcgaa gtaatatttg ttccatctga
     1321 tgacttgtcc ggtctattta cagtgagaca tgtatgtaga gaaggactgt tgattcatga
     1381 aataccattc aaattgagaa tgttgattct gacaattacg caaagcgtgc gtgtgaatag
     1441 aggtatacac caattgaata gttatccatc atggtacgca gatgttgatc aagatcaagg
     1501 agatgattta gataagctac aacgactttg gccactgtca ttaaatacac tttggaacgt
     1561 gattcgtcaa aagcaattga aaccactgaa ttatacagtc atttcagagg aagatgaaga
     1621 tggtatagct tttacggaag aagatgaaga aggaataatg ttgatagaca aaccaaatga
     1681 gtataagtgg ctaagatacg taacatgtgt aattggtcca gacacggatg aagaaataga
     1741 gttttacgat ggtccatatt aaatgtatac gattaaataa atgatagata atgaataaga
     1801 agtaaatcaa tattgcgaat gaaaatagaa aatagataga aagatagcgc ctaggcagca
     1861 taaaatgtga cc
//