LOCUS       NC_014516               1353 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete genome.
ACCESSION   NC_014516
VERSION     NC_014516.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus D chicken/05V0049/DEU/2005
  ORGANISM  Rotavirus D chicken/05V0049/DEU/2005
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            D.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     The genome segments of a group D rotavirus possess group A-like
            conserved termini but encode group-specific proteins
  JOURNAL   J. Virol. 84 (19), 10254-10265 (2010)
   PUBMED   20631147
REFERENCE   2  (bases 1 to 1353)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2010) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1353)
  AUTHORS   Trojnar,E., Otto,P., Roth,B., Reetz,J. and Johne,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diederdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence is identical to
            GU733448.
            GenBank Accession Numbers GU733443-GU733453 represent the complete
            genome of Rotavirus D strain 05V0049.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Rotavirus D chicken/05V0049/DEU/2005"
                     /mol_type="genomic RNA"
                     /strain="05V0049"
                     /host="chicken"
                     /db_xref="taxon:884200"
                     /segment="6"
                     /country="Germany"
                     /collection_date="2005"
     gene            21..1217
                     /locus_tag="RV-Ds6_gp1"
                     /db_xref="GeneID:9742371"
     CDS             21..1217
                     /locus_tag="RV-Ds6_gp1"
                     /codon_start=1
                     /product="VP6"
                     /protein_id="YP_003896051.1"
                     /db_xref="GeneID:9742371"
                     /translation="MEALSSIALTVREAREKIINGTIYSNVSDVIQQFNQMVRVLNGS
                     TFTTGGLATMPLREWTFDLPQLGTTLLNIDANYVESMTPTLDMLTEFVIAVCETELLV
                     DNNRNGAYPQSEALRLLSNNKYVFLNMDLGSKYISEWHYRLSARDPMFSNHVPYIFPY
                     DMAIAYDRVTAAYDNVSGTRFASLNNAIHFAAFDQDFVRGQPANARQFEYLYNLRTPV
                     SNATIVIHPISDILSVPSMIRNQAATHYWPYNPYNIPTFRDDIRVEFQLAGQVIYVAA
                     NLGMHTIPQFDAVNIILTMRRLPLLADLQNIFPAGNPSATHQAVISTKIEVLNATTET
                     TVPSINEHLYALIVGTRGRYQMQAGPVFPPGMRWDDILNRYTPARQSNMHRLMTTASI
                     LDLVSM"
     misc_feature    21..1208
                     /locus_tag="RV-Ds6_gp1"
                     /note="Rotavirus major capsid protein VP6; Region:
                     Rota_Capsid_VP6; pfam00980"
                     /db_xref="CDD:395780"
ORIGIN      
        1 ggttttaaat agtaatcaag atggaggcgc tgtcttcaat tgcgttgact gtcagagaag
       61 cacgagaaaa gatcataaat ggaacaatat attccaacgt atcagatgta atacaacaat
      121 tcaatcaaat ggttagagta ttgaatggat caacttttac tactggtgga ttggctacta
      181 tgccacttag agaatggact tttgatctgc cgcaattggg tacaacctta ctaaatatag
      241 atgctaatta tgtagaatcg atgacaccaa cacttgatat gttgactgag tttgtgattg
      301 ctgtatgtga aactgagttg ctagttgata acaatagaaa tggtgcatac ccacaatctg
      361 aagcactgag attactctct aacaataagt atgttttcct taatatggat ttaggatcta
      421 agtacatctc agaatggcat tatagattgt cagctaggga tccaatgttt tcaaaccatg
      481 taccatatat attcccatat gatatggcta tagcatatga tagagtaacg gctgcttacg
      541 ataatgtgtc aggaacacga tttgcatcac taaataatgc tatacatttc gctgcatttg
      601 atcaagactt tgttcgtgga cagccagcta atgcgaggca atttgaatac ctgtacaatt
      661 tgaggacgcc agtgtctaac gctactatag ttatacaccc aatatcagat attttgtcag
      721 taccaagtat gatcagaaac caagctgcca cacactattg gccatacaac ccatataata
      781 taccgacgtt tagagatgac attagagttg aattccaact tgcaggacaa gtaatatatg
      841 tagctgcgaa tctgggaatg catactattc cgcaattcga tgcagtaaat atcatcttga
      901 caatgaggag attgccgttg ctagctgatt tgcaaaatat attcccagct ggaaatccat
      961 cagcaacgca tcaagctgtg atttcaacta aaattgaagt gctgaatgcg acaactgaga
     1021 caactgtgcc atctattaat gaacatttgt atgctttaat tgtaggaact agaggtagat
     1081 atcagatgca ggctggacca gtctttcctc ctggtatgcg ttgggatgat attctgaata
     1141 ggtatacacc agcgagacaa tctaatatgc accggttgat gacaactgct tccatacttg
     1201 atctagtttc catgtaggcg cggaagatgc cactcgagat aacatcaagg ttaaaatacg
     1261 tggaactagg ctgagtatgt ggcacagtaa tgcggagtaa tatctgcatg gaagaaatct
     1321 gttatcatac gtcagcagct attatctttg acc
//