LOCUS NC_014745 2764 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Okra leaf curl Cameroon virus, complete genome.
ACCESSION NC_014745
VERSION NC_014745.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq; complete genome.
SOURCE Okra leaf curl Cameroon virus
ORGANISM Okra leaf curl Cameroon virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus.
REFERENCE 1
AUTHORS Walter,N.Leke., Judith,K.Brown., Maaike,E.Ligthart., Naaem,Sattar.,
Dominic,K.Njualem. and Anders,Kvarnheden.
TITLE Discovery of a diverse group of helper Begomoviruses and satellite
DNAs infecting Okra in Cameroon
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2764)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2010) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2764)
AUTHORS Nkeabeng Leke,W.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2010) Nkeabeng Leke W., SLU, Department of Plant
Biology and Forest Genetics, Box 7080, SE-750 07, SWEDEN
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FR717137.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2764
/organism="Okra leaf curl Cameroon virus"
/mol_type="genomic DNA"
/isolate="pGRec17F"
/db_xref="taxon:912034"
/geo_loc_name="Cameroon"
/collected_by="Walter Leke"
/identified_by="Walter Leke"
gene 76..513
/gene="V2"
/locus_tag="OLCCV_gp1"
/db_xref="GeneID:10002892"
CDS 76..513
/gene="V2"
/locus_tag="OLCCV_gp1"
/codon_start=1
/product="pre-coat protein"
/protein_id="YP_004046688.1"
/db_xref="GeneID:10002892"
/translation="MLSNQNARSTHYNLKFEIYTCSLSLSGITMWDPLVNEFPESVHG
FRCMLAIKYLQALEDTYEPNTLGSDLIRDLISVIRAKNYVEATRRYNYFHARLEGSSK
AELRQPLYEPCSCPHCPRHKQTSVMDLPANVQKAQNVPDVQKP"
misc_feature 163..396
/gene="V2"
/locus_tag="OLCCV_gp1"
/note="Geminivirus V2 protein; Region: Gemini_V2;
pfam01524"
/db_xref="CDD:366689"
misc_feature 397..468
/gene="V2"
/locus_tag="OLCCV_gp1"
/note="WCCH motif; Region: WCCH; pfam03716"
/db_xref="CDD:202737"
gene 323..1099
/gene="V1"
/locus_tag="OLCCV_gp2"
/db_xref="GeneID:10002891"
CDS 323..1099
/gene="V1"
/locus_tag="OLCCV_gp2"
/codon_start=1
/product="coat protein"
/protein_id="YP_004046689.1"
/db_xref="GeneID:10002891"
/translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPTVLGTSKRRS
WTYRPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGL
THRTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNM
FDNEPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKESAIVRRFFRINHHVTYNHQEA
AKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
misc_feature 374..1096
/gene="V1"
/locus_tag="OLCCV_gp2"
/note="Geminivirus coat protein/nuclear export factor BR1
family; Region: Gemini_coat; pfam00844"
/db_xref="CDD:307130"
gene complement(1096..1497)
/gene="REn"
/locus_tag="OLCCV_gp3"
/db_xref="GeneID:10002890"
CDS complement(1096..1497)
/gene="REn"
/locus_tag="OLCCV_gp3"
/codon_start=1
/product="replication enhancement protein"
/protein_id="YP_004046690.1"
/db_xref="GeneID:10002890"
/translation="MDSRTGELITARQTENGVLIWTINNPLYFKTIKEIPLTHGNQTM
VEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKCLYRLGVISIN
NVIRAVNHVLYDVLQTTVASEFTHNIQIKLY"
misc_feature complement(1138..1494)
/gene="REn"
/locus_tag="OLCCV_gp3"
/note="Geminivirus AL3 protein; Region: Gemini_AL3;
pfam01407"
/db_xref="CDD:279715"
gene complement(1241..1645)
/gene="TrAP"
/locus_tag="OLCCV_gp4"
/db_xref="GeneID:10002887"
CDS complement(1241..1645)
/gene="TrAP"
/locus_tag="OLCCV_gp4"
/codon_start=1
/product="transcritional activation protein"
/protein_id="YP_004046691.1"
/db_xref="GeneID:10002887"
/translation="MRPSSPSHIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVA
FTCRDNGFTHRGTHHCASDREWRTYLDNQQSPIFQNHQGDSSNARESNNGRDADKIQL
QPQEGIGDSQMFHELQGLDDLTPPDWSFLKRI"
misc_feature complement(1262..1645)
/gene="TrAP"
/locus_tag="OLCCV_gp4"
/note="Geminivirus AL2 protein; Region: Gemini_AL2;
pfam01440"
/db_xref="CDD:279747"
gene complement(1545..2633)
/gene="Rep"
/locus_tag="OLCCV_gp5"
/db_xref="GeneID:10002889"
CDS complement(1545..2633)
/gene="Rep"
/locus_tag="OLCCV_gp5"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_004046692.1"
/db_xref="GeneID:10002889"
/translation="MAPNKRFQIYAKNFFLTSPKCSLSKEEALEQLQQISTASNKKYI
KICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKS
YIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKTEALRVIRELAPKDFVL
QYHNLINNLDRIFQEPPAPYVCPFLSSSFDQVPEELEEWAAENVVEAAARPGRPISIV
IEGESRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMG
AQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKDYLEEEKNAHLKSWALKNATFI
TLSYPLYSGTNQSPASGGQEESNQETQD"
misc_feature complement(2277..2615)
/gene="Rep"
/locus_tag="OLCCV_gp5"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1944..2258)
/gene="Rep"
/locus_tag="OLCCV_gp5"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(2183..2476)
/gene="C4"
/locus_tag="OLCCV_gp6"
/db_xref="GeneID:10002888"
CDS complement(2183..2476)
/gene="C4"
/locus_tag="OLCCV_gp6"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_004046693.1"
/db_xref="GeneID:10002888"
/translation="MANLICMCFSNSKGNSSAKIRDYSTWSPQIGQHISIQTFRELNP
APTSSPTSTRMETHSNGENSRSTDDLPEEANRQPMTLTPQRLTQGVRQRLLGL"
misc_feature complement(2225..2476)
/gene="C4"
/locus_tag="OLCCV_gp6"
/note="Geminivirus C4 protein; Region: Gemini_C4;
pfam01492"
/db_xref="CDD:279790"
ORIGIN
1 accggtgggc gcgaaaaaaa aaagtggtcc ccgccccacg tgaacatgtc gcgcgagtgc
61 tgaacatgtc gcgcgatgct gtccaatcag aacgcgcgct ctacgcatta taatttgaaa
121 tttgaaatat atacttgctc cctaagtttg tccggcataa ctatgtggga tccgttagtg
181 aacgagttcc ccgaatctgt gcatgggttt cgttgtatgc ttgcaataaa atatttgcag
241 gctttagagg atacttacga gcccaacacg ttggggtctg atttaattag agatttaata
301 tctgtgatta gagcgaagaa ttatgtcgaa gcgaccagga gatataatta tttccacgcc
361 cgtctcgaag gttcgtcgaa ggctgaactt cgacagccct tatacgagcc gtgcagctgt
421 ccccactgtc ctaggcacaa gcaaacgtcg gtcatggact taccggccaa tgtacagaaa
481 gcccagaatg taccggatgt acaaaagccc tgatgttcct cgaggatgtg aaggtccatg
541 taagatccaa tcattcgatc aacgtgactc agtaacccat acaggtaatt caagatgtct
601 aagtgatgtc acaagaggta atgggcttac tcatcgtaca ggtaaacgtt ttgttatcaa
661 gtctgtttac atattaggta aggtttggat ggacgagaat gttaagaagt ccaatcacac
721 aaacacgtgt atgttctggt tagttagaga tagacgtcca tatggtaata gccctcaaga
781 ttttggacag gtatttaata tgtttgataa tgagcccagc actgcaacgg ttatgaacga
841 caagcgtgat cgttaccagg ttttaaagag gtttcaagca accgtcactg gaggaccttc
901 cggttgcaaa gagtctgcta ttgttaggcg ttttttcagg ataaaccatc atgtcactta
961 caatcatcag gaagctgcca aatatgagaa tcatacggag aatgctttac tattgtatat
1021 ggcatgtacc catgcgtcaa accctgtgta tgctagtctt aaaatacgaa tgtatttcta
1081 cgattcagtt tcgaattaat ataattttat ttgaatattg tgtgtgaatt cacttgccac
1141 tgttgtttgc aatacatcgt acaaaacatg attgactgct ctaattacat tgttaattga
1201 aattacacct aatctataca aacatttcat aatctgtttc ctaaatacgt ttaagaaaag
1261 accagtcggg gggcgtgaga tcgtccagac cctgaagttc atgaaacatt tgtgaatccc
1321 caattccttc ctgaggttgt agttgaatct tatctgcatc tctaccattg tttgattccc
1381 gtgcgttaga ggaatctcct tgatggtttt gaaatatagg ggattgttga ttgtccagat
1441 aagtacgcca ttctctgtct gacgcgcagt gatgagttcc cctgtgcgtg aatccattgt
1501 ctctgcacgt gaaggctacg tatactgtgc aaccacaagg gatgtcaatc ctgcgtctcc
1561 tgattgctct cttcttggcc tcccgatgct ggactttgat tggtacctga gtacagcgga
1621 tatgagaggg tgatgaaggt cgcattcttt aatgcccagg atttgagatg tgcgttcttc
1681 tcctcttcta aatagtcttt ataggatgaa tttggacctg gattgcagag gaagattgtt
1741 gggatgcccc ctttaatttg aactggcttc ccgtattttg tgttgctttg ccagtccttt
1801 tgtgcaccca tgaactcctt aaagtgtttc agataatgcg ggtcaacatc atctatgacg
1861 ttataccatg cgtcattact gaacaccttt gggctcagat caagatggcc gcacagataa
1921 ttatgaggcc caagacttct ggcccatacg gtctttcctg ttctgctttc cccttcaatt
1981 actatactaa tcggtctacc tggccgcgca gcggcctcca cgacgttctc cgccgcccat
2041 tcttcaagtt cttctggaac ttggtcgaac gaagaagaca aaaaaggaca aacataagga
2101 gctggaggct cctgaaaaat cctatctaaa ttattaatta aattatgata ttgtaaaaca
2161 aaatctttgg gagctaactc ccttataacc ctaagagcct ctgtcttact ccctgcgtta
2221 agcgctgcgg cgtaagcgtc attggctgtc tgttggcctc ctctggcaga tcgtccgtcg
2281 atctggaatt ctccccattc gagtgtgtct ccatccttgt cgatgtagga cttgacgtcg
2341 gagctggatt tagctccctg aatgtttgga tggaaatgtg ctgacctatt tggggagacc
2401 aggtcgaata gtctctgatt ttggcacttg aatttccctt cgaattggag aagcacatgc
2461 agatgaggtt ggccatcctc gtgaagttct ctgcaaatct tgatgtattt cttgtttgat
2521 gctgtactta tttgctggag ttgctctagg gcttcctctt tgcttagaga acattttggg
2581 gaagttagga aaaaattctt tgcatatatt tggaatctct tgttaggagc cattgacttg
2641 gtcaatcggt actcagatgc ttctccctag tatatcggta ctcaatatat agtgagtacc
2701 aaatggcatt ttggtaaaaa tcccaataat tttgaacccc catagcgccc accgttataa
2761 tatt
//
