LOCUS       NC_014930               1760 bp ss-DNA     circular VRL 13-AUG-2018
DEFINITION  Cyclovirus NGchicken15/NGA/2009, complete genome.
ACCESSION   NC_014930
VERSION     NC_014930.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Cyclovirus NGchicken15/NGA/2009
  ORGANISM  Cyclovirus NGchicken15/NGA/2009
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus
            adie.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Li,L., Shan,T., Soji,O.B., Alam,M.M., Kunz,T.H., Zaidi,S.Z. and
            Delwart,E.
  TITLE     Possible cross-species transmission of circoviruses and
            cycloviruses among farm animals
  JOURNAL   J. Gen. Virol. 92 (PT 4), 768-772 (2011)
   PUBMED   21177928
REFERENCE   2  (bases 1 to 1760)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1760)
  AUTHORS   Li,L. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2010) Blood Systems Research Institute,
            University of California, San Francisco, 270 Masonic Ave, San
            Francisco, CA 94118, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to HQ738644.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Cyclovirus NGchicken15/NGA/2009"
                     /mol_type="genomic DNA"
                     /isolate="NGchicken15"
                     /isolation_source="muscle"
                     /host="chicken"
                     /db_xref="taxon:942037"
                     /country="Nigeria"
                     /collection_date="2009"
     gene            1..837
                     /locus_tag="CyCV-NGck15_gp1"
                     /db_xref="GeneID:10100795"
     CDS             1..837
                     /locus_tag="CyCV-NGck15_gp1"
                     /note="putative replication-associated protein"
                     /codon_start=1
                     /product="Rep protein"
                     /protein_id="YP_004152333.1"
                     /db_xref="GeneID:10100795"
                     /translation="MPRQTVRRFVFTWNNYPIEAYDKCEKYLTKFCKYGIVGEEIAPE
                     TGTPHLQGFCNLHKPTRFSTIKKHLDNSIHIEKANGSDIDNQKYCSKSGIFFETGQPS
                     KQGQRSDLAVVSNKILEGSTTIRDIATQHPETYIRYFRGIRELQRLVNPISPRDFPTQ
                     VYYYYGPPGTGKSRTALEEAKKIDPTSIYYKPRGLWGDGYTNQKCVIIDDFYGWIKYD
                     ELLKICDRYPYKVQIKGGFEEFNSTHIWITSNVDTDLLYKFTGYCNAAFERRITIKKY
                     FA"
     misc_feature    16..273
                     /locus_tag="CyCV-NGck15_gp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    487..750
                     /locus_tag="CyCV-NGck15_gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
     gene            complement(834..1502)
                     /locus_tag="CyCV-NGck15_gp2"
                     /db_xref="GeneID:10100794"
     CDS             complement(834..1502)
                     /locus_tag="CyCV-NGck15_gp2"
                     /note="putative capsid protein"
                     /codon_start=1
                     /product="Cap protein"
                     /protein_id="YP_004152334.1"
                     /db_xref="GeneID:10100794"
                     /translation="MAYRRVRKYRRRIRRPLRKYRRRFRRIRKGRYSKPGNLYAKFTR
                     IHTIVVQNELNTTWDCSFQLGQFSEWTRIGSNFEMTKVNKVVVKVIPMQNVSNNSTSS
                     VPSYCIYPWHYGVPIPKDFGTLLSVDKAKIRPQTVPLTMSFVPNTISPAQNTSSNEFT
                     APVINWKPTVQWTTTAQDQPLIRCGALGFQGDPSATGRSTRFNIVTNVYVEMRNQSII
                     NGLS"
ORIGIN      
        1 atgcctcggc aaacagtcag acgtttcgta ttcacttgga acaactatcc tatcgaagca
       61 tacgacaagt gcgaaaaata tctcaccaaa ttttgcaaat atggcatcgt tggagaagaa
      121 atcgctccgg aaacagggac gcctcaccta caggggtttt gtaacctaca taaacccaca
      181 cgctttagta ccatcaagaa gcatctcgat aactcaatcc atattgagaa ggcaaatgga
      241 tccgacattg acaaccaaaa atactgtagt aagtcaggca tcttttttga aacgggacag
      301 ccctctaaac aaggacagag gtcggacctt gctgtcgtta gtaacaaaat cttggaagga
      361 agtactacaa tacgagatat tgccacccaa catcctgaaa cgtacatcag atactttcgc
      421 ggcattcgag aactacaacg attggtcaac ccgatctctc ctcgagactt tcccacacaa
      481 gtatattact actacggtcc gccaggaaca ggtaaatcca gaactgcttt ggaagaagca
      541 aaaaaaattg atccgacttc catctactat aaaccacgag gtctgtgggg ggacggctat
      601 acaaaccaga aatgtgttat tattgacgac ttctacggat ggataaaata cgacgaacta
      661 ctgaaaattt gcgaccgtta tccttacaaa gtacaaataa aagggggatt cgaagaattc
      721 aacagcacac acatctggat tacttcaaac gtcgatacag atttattgta taaatttaca
      781 ggatattgta acgctgcatt tgaacgtcgt attacaataa aaaaatattt tgcttaagac
      841 agtccattta ttatagattg attcctcatt tccacataaa cattagtaac tatattaaac
      901 cgcgtactcc gaccagttgc tgagggatca ccctgaaatc ctaaagcgcc acagcgaatc
      961 aagggctgat cttgtgcagt tgtagtccat tgaacggtag gcttccaatt aatcactgga
     1021 gcggtaaact cattcgacga agtattttga gctggggata tagtattcgg cacaaaactc
     1081 atagtcaacg gaacagtttg tggacgaatc ttggccttat ccacacttaa cagcgttcca
     1141 aaatctttag gaataggtac cccgtaatgc caagggtaaa tacaatacga aggcacagag
     1201 gacgtactat tgttagacac attctgcatt ggaataactt ttacaactac tttattaact
     1261 tttgtcatct cgaaattact tccgatacga gtccactcag aaaactgacc cagttgaaac
     1321 gaacaatccc acgtagtatt gagttcattc tgaacaacaa tcgtatgaat tcgcgtaaat
     1381 ttagcataca gatttccagg tttcgaatac cggcctttac gtatcctacg aaatcggcga
     1441 cggtacttcc gcaacggtcg ccgaatgcgg cgacgatact ttctaactcg acgatacgcc
     1501 atatgtagag ggggagcttc cctcgctacc gctcgggaca aatataaccc ccctactaac
     1561 aaccggtttc aacatgcttt gtgtagcgct cccccagctc gcccccccgc cccccccccc
     1621 tccggtacgc tccggggggg gggcgtcgcg ccgctgtggc gcgtgcgcgt ggaaacgtgt
     1681 tcaaggctga aagtgaaagg tggttacaaa gttgggttac gaagtggcgg gtaatactaa
     1741 gccgccactt cgttgtaacc
//