LOCUS NC_015126 3958 bp RNA linear VRL 13-AUG-2018
DEFINITION Avian orthoreovirus segment L1, complete genome.
ACCESSION NC_015126
VERSION NC_015126.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avian orthoreovirus
ORGANISM Avian orthoreovirus
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE 1
AUTHORS Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
TITLE The genomic constellation of a novel avian orthoreovirus strain
associated with runting-stunting syndrome in broilers
JOURNAL Virus Genes 42 (1), 82-89 (2011)
PUBMED 21116842
REFERENCE 2 (bases 1 to 3958)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3958)
AUTHORS Banyai,K.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
H-1143, HUNGARY
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FR694191.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3958
/organism="Avian orthoreovirus"
/mol_type="genomic RNA"
/strain="AVS-B"
/db_xref="taxon:38170"
/segment="L1"
/country="USA"
gene 21..3902
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/db_xref="GeneID:10220417"
CDS 21..3902
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/codon_start=1
/product="lambda-A protein"
/protein_id="YP_004226521.1"
/db_xref="GeneID:10220417"
/translation="MSSRKVARRRHKDATESKDTKNTTKSKPSSTDVKESVENATDKK
VTVPTPDNPAASTPSSTDGASQTSVAKQTNDNDNSVKESAPKPTVSSDGKDGMHGAVK
SQDAKATVAVDNNKDRDVVFGGAGSGDKNAITKTGSVDNDGGVKVVPAKDATISSAKA
MMEQKQLVAGLPKQPKSANHLCTVCMAQFASSDALAIHQTTHSIGSNAALTSFSISTA
VEEFIQSWATATSTANTKTALTVSDVDSLMMTEGIRLITWDSGLCTSFELVPIVHSNT
VQDVISYSWFTSSYNITTPFPQATVVRIVLRTNWAAKLDSPSSSRECDLRLAPPTESN
ARSFSMLLNTGATPEGTFNPNTLRMNVLQMCLQYVLSNLHLNRSTQFTMDLTAAAPNL
SASQLRIVPEDKEGKWFPVMYPSRVNIPLFNKTADFVNQCIRDRIGRYDRAQTFAGAP
SEWADMWETADSLTLSVREMWMSRISQMNITPADIADAISRCSQSLLTVAAPTAPSVA
RLLPWRVSSDERQLLQLLMYLNVGTSADYVQPILSAFARTLSRVSPLRINPTLIANAM
STIVESTTNTQSPAAAILSKLKPVASDFSDFRLACAAWLYNGCVQTYLSEDSYPSSGG
SVTSIDTLVDMFVCLLALPLVTDPNAPCQAFMVVANAMVGYENLPMDDPNFTQQRLAA
AFNNPTTWPQCFLHPQNIDRRQCPILSWWAQQIHRNWPTPSQITYGAPDIIGSANLFT
PPDVLLLPLQHRPIRITNPTLNFDNELTTWRNTVVDLVLRIIDSGRYQPNWNQSIRAS
MRNAMTNFRIIKSYTPAYIAELLPVELAAIAPTLPFQPFQVPFARLDRDAIVTHVNVS
RQAPNNLAQPALNMSMTYQRTGVPISLSARPLAVALLSGQYPTDPPLQTNVWYVNTLT
PLYSNDGLFNNVQHAMVASEAYATLITMLAQCTDMQYPVDRPLNWLRQINLAANEATI
FGRSINSLFQTAFDLSPSTVLLQPFLESDPRATQLAISYVRYNGDSETFVPTVRPSMI
SEATLLVERTLSHEYNLFGLCRGDIILGQHMTPTAFNPLAPPPSVIFNRGDVDVHEFG
SRSFANFGMNGEEILVMDANGVRRPLLGRWVMPLQLLMVNIGVFPKLLLDRILKGRLY
IRLEVGAYPYTVQYYQGREFTDGFTLLEQWMSKVSPMGIPPVPFLMPQSEGHNITSGM
VTHYIWSTEYNDGSLFATNTDLPVTVFGPDRTIPIERYRALVDPGALPATNQLPHTID
LYCSLRRYYLETPPITATVTTYGDGLPALNH"
misc_feature 348..3863
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/note="inner capsid protein lambda-1 or VP3; Region:
lambda-1; cd11674"
/db_xref="CDD:212564"
misc_feature order(537..548,561..563,576..578,693..698,1503..1508,
1512..1514,1518..1520,1701..1703,1713..1715,1722..1727,
2286..2297,2304..2309,2355..2357,2367..2375,2382..2384,
2400..2402,2406..2414,2418..2420,2430..2432,2439..2444,
2448..2450,2454..2456,2721..2726,2730..2732,2739..2741)
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/note="homooligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:212564"
misc_feature order(564..566,573..575,612..614,624..626)
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:212564"
misc_feature order(1344..1361,1377..1379,1383..1385,1425..1427,
1434..1439,1446..1451,1455..1457,1461..1463,1467..1472,
1476..1481,1518..1541,1560..1562,2208..2210,3099..3101,
3105..3107,3114..3116,3774..3782,3822..3824,3828..3830)
/gene="lambda-A"
/locus_tag="AorVsL1_gpp1"
/note="VP6 interface [polypeptide binding]; other site"
/db_xref="CDD:212564"
ORIGIN
1 gcttttctcc gaacgccgaa atgagttcgc gcaaagtggc tagacgtcgt cataaggatg
61 ctactgaatc taaagacact aagaacacta ctaagtctaa gccatcttcc actgacgtta
121 aagaatccgt agaaaacgcc acagacaaga aagtcaccgt cccaacgcca gataatccag
181 ctgcctctac tccctcctct actgatgggg cttcacaaac ctcagtcgct aagcagacga
241 atgataatga taactcggtt aaggaatcag ctcccaaacc tactgtatct agtgatggga
301 aagatggaat gcacggtgcg gtgaaatcgc aagacgctaa agcgaccgta gctgtagata
361 ataataagga tagagacgta gtatttggtg gtgcgggttc tggtgataag aatgctatta
421 cgaagactgg gtctgttgac aatgatgggg gtgttaaggt tgttccagct aaagacgcta
481 cgatatcttc agctaaagct atgatggagc aaaagcagct tgtagctggc cttccgaagc
541 aaccgaaatc cgctaatcat ttgtgtactg tctgcatggc ccagttcgcg tcatctgacg
601 ctcttgctat tcaccagact acgcattcta ttggttctaa tgctgctctg acaagctttt
661 cgatttctac tgctgttgaa gaattcattc agtcatgggc taccgccacg tctacagcca
721 acactaagac ggctttgact gtgtctgacg ttgactcact gatgatgact gaaggaatac
781 gcctcataac ttgggattcc gggttatgta catctttcga acttgtcccg attgtccatt
841 caaatactgt tcaagatgtt atttcttatt catggtttac gtcaagctac aacatcacta
901 ccccctttcc acaggcgact gtcgtacgaa tcgttttacg taccaactgg gctgctaagt
961 tggattcacc atcatcatcg cgggaatgtg atcttcgtct tgccccccct acagagagta
1021 acgctaggtc attctcgatg ctactcaaca cgggtgcgac cccagaaggc acttttaacc
1081 caaacactct tcgtatgaat gtgctgcaga tgtgtcttca gtatgtgctg tctaacttac
1141 acttaaaccg tagtactcaa tttaccatgg atttgactgc cgcggctcct aatctttccg
1201 cgtctcaact ccgtattgtt ccagaggata aggagggtaa atggtttcct gtcatgtatc
1261 catcccgagt gaacatcccc ttgttcaaca agactgctga tttcgtcaat cagtgcattc
1321 gtgataggat tggccgatat gatcgtgctc aaactttcgc tggtgcacct tctgaatggg
1381 ctgacatgtg ggagacagcg gactcgctaa ctctttccgt tcgtgaaatg tggatgtcgc
1441 gtatttctca gatgaacatt actcctgctg acattgctga cgctatctcc agatgttctc
1501 agtccttgct cactgttgct gcgcctacgg ctccctctgt ggctcgcttg ttaccgtggc
1561 gggttagttc tgatgaaagg cagctcctcc aattgttaat gtacctaaat gttgggacca
1621 gtgccgacta cgtccagccg attctgtctg cgtttgctcg gaccctgtct cgtgtgtcac
1681 cattacgcat taatcccacc ctaatcgcta acgctatgtc gacgatcgtc gagagcacta
1741 ctaacaccca gagtcccgct gcggctatct tgtcaaagct taaacctgtg gcctctgatt
1801 tttccgactt cagattggcg tgtgccgctt ggttatataa cggttgcgtt cagacatacc
1861 tgtctgagga ttcatatcca agtagtggtg ggtctgtcac tagcattgac acgttggttg
1921 atatgttcgt gtgtctactg gcgttacctt tagtcactga tcctaatgct ccgtgccaag
1981 cctttatggt tgtcgctaat gccatggttg gctacgagaa tctgcctatg gacgatccta
2041 atttcactca gcagagattg gctgcagcat ttaacaatcc taccacctgg cctcagtgct
2101 tccttcaccc tcaaaatatt gatcgtcgcc agtgtcccat cctctcctgg tgggctcagc
2161 aaatccaccg taattggcct acaccatctc agattactta cggtgcacct gatatcattg
2221 gatccgccaa tcttttcact ccccctgatg tgctgctgct tccattacaa cacaggccca
2281 tacgtattac caatcccact ctgaacttcg ataatgagtt gacgacctgg cgtaacaccg
2341 tggtcgactt agtcttgcgc atcatcgaca gtggtcggta ccagcctaat tggaatcagt
2401 ccattcgcgc gtccatgcga aatgcgatga cgaatttcag gattatcaag tcttacactc
2461 ctgcctacat agcggaactg ctacccgtcg aattggcggc catcgcccca actttaccct
2521 tccagccttt ccaggtaccg tttgctcgtt tggatcgtga cgctatcgtc acccacgtca
2581 atgtatctcg gcaagctccc aacaatcttg ctcaacctgc gttaaatatg tctatgacgt
2641 accagcgcac aggagttccg atctctctca gcgcccgtcc cttagcggtc gctcttctgt
2701 caggccagta ccccactgat cctcctcttc agaccaacgt ttggtacgtg aacactctca
2761 cacctctgta ttctaatgat ggtctcttta acaacgtgca acatgcgatg gttgcctctg
2821 aagcttacgc cactttgatc actatgctgg ctcagtgcac tgacatgcaa tatcccgtgg
2881 atcgccctct gaactggttg cgtcagatta atttggctgc taatgaggcg acgatttttg
2941 gtcgctcgat caattcactt ttccagactg cctttgacct ctcgccttct actgtgttgc
3001 ttcaaccttt cttggagtct gatccacgtg caacgcaact agccatttct tacgttcgct
3061 ataatggaga cagtgagacc ttcgtaccga cagtacggcc atctatgatc tcagaggcga
3121 cattgctcgt tgagcgcact ctttcgcatg aatacaatct cttcggtcta tgccgtggtg
3181 acatcattct gggacaacac atgactccga ctgcgttcaa tcccttagct cctcctcctt
3241 ctgtcatttt taacaggggt gatgttgatg ttcatgaatt tggatctcgt agcttcgcta
3301 acttcggtat gaatggagag gagatcttgg tcatggacgc gaacggtgtg cgtcgtccac
3361 tacttggccg gtgggttatg ccgctccagc ttttgatggt gaatattggc gtatttccca
3421 agctgctgtt ggatcgtatc ttgaaaggac gtctatatat cagacttgaa gttggcgcgt
3481 atccctacac ggtgcagtac taccagggac gtgagttcac tgacggtttt acattgcttg
3541 agcaatggat gtccaaggtg tcgcccatgg gtatccctcc tgttcctttt ctcatgccac
3601 agtccgaggg acacaacatc acttcaggca tggtcactca ctacatctgg tccactgagt
3661 acaatgatgg gtcactcttt gccacgaaca ctgacctgcc ggttactgta tttgggcctg
3721 accgtaccat tccaatcgag cgctatcgtg cactcgttga tccaggcgcc ctccctgcta
3781 ctaaccaact gccgcacact atcgatctct actgctcact gagacgttac tatctggaga
3841 cgcctcccat tactgccact gtcactactt atggcgatgg actccccgcg ctgaaccatt
3901 agagcggcga ggctagacgc gagctgatcg cgtcgactct cgttggagat tattcatc
//
