LOCUS NC_015127 3829 bp RNA linear VRL 13-AUG-2018
DEFINITION Avian orthoreovirus segment L2, complete genome.
ACCESSION NC_015127
VERSION NC_015127.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avian orthoreovirus
ORGANISM Avian orthoreovirus
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE 1
AUTHORS Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
TITLE The genomic constellation of a novel avian orthoreovirus strain
associated with runting-stunting syndrome in broilers
JOURNAL Virus Genes 42 (1), 82-89 (2011)
PUBMED 21116842
REFERENCE 2 (bases 1 to 3829)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3829)
AUTHORS Banyai,K.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
H-1143, HUNGARY
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FR694192.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3829
/organism="Avian orthoreovirus"
/mol_type="genomic RNA"
/strain="AVS-B"
/db_xref="taxon:38170"
/segment="L2"
/country="USA"
gene 14..3793
/gene="lambda-B"
/locus_tag="AOrVsL2_gpp1"
/db_xref="GeneID:10220419"
CDS 14..3793
/gene="lambda-B"
/locus_tag="AOrVsL2_gpp1"
/codon_start=1
/product="lambda-B protein"
/protein_id="YP_004226522.1"
/db_xref="GeneID:10220419"
/translation="MRVNGFDDATLSYAQSISGVIPMTNKLFEQASASIRALPRSHVY
ALLDDVNFSVSCVIPNRIFHHSDHSEYFYVDAVNRVRRKQVIDPDDVFVPNCNLQGLI
SPMERLPNYGQLSEIISSNARDGLPSARIAATFYNISVSQARQIKAPLETFLLPLLLS
ETYSLSEDPCGLDTTASPPIHTNLALWVLREISRTICGSSKDRSPWLLLDSGVAWFMS
PLMSSAIPPLMADLTNLAIYKQICSVSDEMHSLAVQMVLQAAASQSYGHYILQTKSIF
PQNTLHNMFRTLTDGIVPVIDWLEPRSNYRFMLQGARRVTSDDANQAPDNTEAAEQLG
RKMGCLDVVRSLRKMSSSITVHSHDAMTFVRDAMSCTSGIFITRQPTETVLKEYTQAP
TIEVPIPQSDWSPPIGSLRYLSDACSLPAVYLARAWRRAASAVVDNPHTWDPLYQAIL
RSQYVTSRGGSGAALRDALKAAEVELPQYPGVSVKVATKIYQAAQTADVPFDKLSRAV
LAPLSMGLRNQVQRRPRTIMPMNVVQQQISAAHTLSADYINYHMNLSTTSGSAVIEKV
VPLGMYASCPPAQAVNIDIKACDASITYQYFLSVIVGAIHEGAAGRRVSSSFMGVPPS
VLSVVDSSGVTSSVPISGFQVMCQWLAKLYQRGFEYQVTDTFSPGNIFTHHTTTFPSG
STATSTEHTANNSTMMDGFLRAWIPASGASDVLKKFCKSISIQRNYVCQGDDGLMVVD
GLSTGKLSGEIIDEFVKELRAYGKSFGWNYDIEFTGNAEYLKLYFLNGCRIPNVSRHP
ICGKERASGDKLEMWPSTIDIFNGIFVNGVHDGLPWRRWLRYCWALALMYSGKIVRHD
DSEVLIQYPMWSFVYWGLPPISAFGSDPWIFSPYMPTGDHGFYSMLTLVRPLIAASSP
PSDASGLFGQCDHNTLFNSELVYQGYYMAQCPRQPSRSNRRDDPDSVQRFVKALESYL
YISPELKSRVRLGRDRWQKLVGYTEKSPPSLDDVALKWFRSAQEADLPTAVEIQAMDL
SLLSARRRTYQGFSKLLNTYLRVTWDLSEPIDHAVDPRVPLCAGISPSNSEPFLKLYS
VGPMMQSTRKYFSNTLFIHRTVSGLDVDVVDRALLRLRALNAPDDVVVAQLLMVGLSE
AEAATLAAKIRTMDINAVQLARVVNLSIPDSWMTMDFDRLIRDIVSITPLTVRSLTTD
LPSGVPWARAILQFLGAGVAMTAVGPVRRPYLHSVAGGMASFIKQFRRWMRAETR"
misc_feature 50..3784
/gene="lambda-B"
/locus_tag="AOrVsL2_gpp1"
/note="Reovirus RNA-dependent RNA polymerase lambda 3;
Region: RdRP_5; pfam07925"
/db_xref="CDD:369599"
ORIGIN
1 gcttttcctc accatgcgtg tcaacgggtt tgatgatgct actctctctt acgcacaatc
61 catttcgggg gttattccta tgacaaataa gttatttgag caagcatccg catcaatacg
121 tgctttaccc cgatcacacg tttacgctct gttagacgac gttaatttct ctgtttcatg
181 cgtaattcca aatcgcatct tccaccactc tgaccactct gagtattttt acgttgatgc
241 ggttaataga gttaggcgta aacaggttat tgatcctgat gatgtgttcg ttcctaattg
301 taatttacag ggtctcatct ctccaatgga gaggttaccg aattatggcc agttatcgga
361 aattatttcg tcgaatgcac gtgacggcct gccgtccgct cgcatagcgg ctacatttta
421 taatatttct gtgtcccaag ctcgtcagat taaggctccg cttgaaacat ttttgttgcc
481 cttactgctg tctgagacct actctttatc agaggatcct tgtggtcttg acactacagc
541 ttctcccccg attcatacaa atttagcgtt atgggtgtta cgtgaaatta gtcgaactat
601 ttgtggatct tcaaaggatc gctcaccctg gttgttactt gactccggtg ttgcgtggtt
661 catgtctccg ttaatgtcat cagctatccc acctcttatg gctgatttga ctaatctagc
721 gatttacaaa cagatctgtt ccgtttctga cgagatgcat tctcttgcgg ttcaaatggt
781 tttacaagct gctgcgtcac agtcatatgg tcattacata ttgcagacaa agtcaatatt
841 tcctcagaac accttacaca acatgtttcg gacgctcact gatggcatcg taccagtcat
901 tgattggttg gaaccgcgtt ccaattaccg tttcatgctt cagggtgcgc gtagggtgac
961 ttcagatgat gcgaatcaag cgccggacaa tacggaagca gctgagcaac tcggtcgtaa
1021 gatgggatgc ttagatgttg tgcgatctct gcgtaagatg tcttcatcta ttactgttca
1081 ctcacatgat gcgatgactt tcgtgcgtga cgccatgtcg tgtactagtg gtatatttat
1141 tacacgtcaa cctactgaga ctgttttaaa agagtatacc caagctccca ctattgaagt
1201 gcccattcca caatcggact ggtcaccgcc tattggatct ttacggtacc tttcagatgc
1261 ctgctctctt cctgctgtgt acttggctag agcttggcga cgggccgctt ctgcagtggt
1321 agacaaccct cacacttggg atcctttata tcaggctatt cttcgctccc aatacgtgac
1381 atcccgtggt gggtctggtg cagcgctgag agatgcttta aaggctgctg aggttgagct
1441 tcctcaatat cctggggtca gtgttaaggt agccactaag atttaccaag cggctcaaac
1501 tgcagatgtc ccctttgata aattatctcg agccgttcta gctccactgt caatgggtct
1561 gcgtaaccaa gttcagcgac gtccaaggac cattatgcct atgaatgtcg tccaacaaca
1621 gatttcggcg gcccacactc tctccgctga ctacattaac tatcacatga acctatcgac
1681 aacatcaggc agcgcggtca tcgagaaggt agtcccactg ggcatgtatg catcatgtcc
1741 tcctgctcag gcggttaata tcgacattaa ggcatgtgac gcttctatta cgtatcagta
1801 ttttctttcg gttattgtcg gcgctattca cgagggtgca gcagggcgtc gtgtctcgtc
1861 ctcatttatg ggagtccctc ctagtgtctt gtctgtcgtt gattctagtg gagtgacgtc
1921 gtcagtgcct atttctggtt ttcaggttat gtgtcaatgg ttggctaagc tctaccagcg
1981 aggttttgag tatcaagtca cggacacatt ttcgccaggt aatatcttta cacatcacac
2041 tactactttt ccctctggtt cgacggcgac gtctacggaa catactgcta ataatagcac
2101 gatgatggac ggattccttc gcgcttggat tcctgcttct ggcgcgtctg atgtcttgaa
2161 gaagttctgc aaatccattt cgatacaacg gaactatgtt tgccagggcg acgatggtct
2221 aatggtggtt gatgggttgt caactggcaa attgtcaggt gaaataatcg atgaattcgt
2281 taaagagcta cgggcttatg gtaaatcgtt tgggtggaac tatgacatag agttcactgg
2341 gaatgctgaa tatttgaagc tatatttcct aaacggttgt cgtataccta acgtttctcg
2401 acatccaatc tgtggtaagg aacgagcctc aggagacaaa ctggagatgt ggccgtctac
2461 cattgacata ttcaatggca tatttgtgaa cggcgtgcat gatggcttac catggcgtag
2521 atggctgcgt tattgttggg ctcttgctct catgtattcc ggaaaaatcg tacgtcatga
2581 cgactctgag gtgttaatcc aatatcctat gtggtccttc gtctattggg gcttacctcc
2641 tatcagtgcc ttcggttctg atccttggat cttctctcca tacatgccta ctggtgacca
2701 tggcttttat tcaatgttaa cattagtgcg tcccttgatc gccgcctcgt ctcccccgtc
2761 ggacgcttct gggctattcg gtcagtgcga tcataacacc ctgttcaact ctgaattagt
2821 atatcagggt tactatatgg cgcaatgtcc acgacaacct tctcgctcaa atcgtagaga
2881 tgatcccgat tcggtgcaac gttttgtcaa ggctctagag tcttacctgt acatctcccc
2941 tgaactgaaa tcacgagtga gacttggccg tgatcgatgg cagaaattgg ttggctacac
3001 ggagaaatct ccaccttcgc ttgatgacgt agctctcaag tggtttcgta gtgctcaaga
3061 ggccgatctt ccgactgctg tagaaattca ggccatggat ctgtccttgt tatctgcaag
3121 acgtcggaca tatcagggat tttctaaatt attgaatact tacttgagag tgacttggga
3181 cttgtccgaa ccaattgacc acgctgtgga tccccgtgtc cctctgtgtg ctggtatatc
3241 tccgtcgaat agcgagccgt tcttaaaatt gtactctgtt ggcccgatga tgcaatcgac
3301 acgtaaatat ttcagtaata ctttattcat tcaccgtact gtatccggtc tcgatgtcga
3361 tgttgtcgat cgtgctcttt tgaggttgcg tgcactcaat gcgcctgatg acgtggttgt
3421 agcccagctt ctcatggtag gtttatccga agccgaagcg gccacgctgg cagcgaagat
3481 acggacgatg gatatcaacg ccgtgcagtt agcgagagtt gtcaatctgt ctatccctga
3541 ctcgtggatg actatggact tcgaccgtct gatacgagac atagtgtcta tcactccgtt
3601 gactgtccgc tctttaacta ctgatctacc gtccggtgtc ccatgggcac gtgcgatact
3661 ccagttctta ggtgcgggtg ttgctatgac cgccgttggc cccgtgcgtc gtccctatct
3721 gcattcggta gctggaggca tggcatcgtt cattaagcag ttccgccggt ggatgcgtgc
3781 tgaaacgagg tagcgtccgt gcccggcatg gctcgaggaa ttactcatc
//
