LOCUS NC_015128 3907 bp RNA linear VRL 13-AUG-2018
DEFINITION Avian orthoreovirus segment L3, complete genome.
ACCESSION NC_015128
VERSION NC_015128.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avian orthoreovirus
ORGANISM Avian orthoreovirus
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE 1
AUTHORS Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
TITLE The genomic constellation of a novel avian orthoreovirus strain
associated with runting-stunting syndrome in broilers
JOURNAL Virus Genes 42 (1), 82-89 (2011)
PUBMED 21116842
REFERENCE 2 (bases 1 to 3907)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3907)
AUTHORS Banyai,K.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
H-1143, HUNGARY
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FR694193.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3907
/organism="Avian orthoreovirus"
/mol_type="genomic RNA"
/strain="AVS-B"
/db_xref="taxon:38170"
/segment="L3"
/country="USA"
gene 13..3870
/gene="lambda-C"
/locus_tag="AOrVsL3_gpp1"
/db_xref="GeneID:10220421"
CDS 13..3870
/gene="lambda-C"
/locus_tag="AOrVsL3_gpp1"
/codon_start=1
/product="lambda-C protein"
/protein_id="YP_004226523.1"
/db_xref="GeneID:10220421"
/translation="MAQIRGLRLSTTLSAPPSRKTLTSHTYDELISALKLTTKPWRPL
KSRDRNSITAVQLLFPLNGYIEPMFILEKDMSYEDFESWLSPLLSALADQLLRRYPIA
SHHGRLVNPLLSNAIVAAFLSNVPYLHALDHLFIIRGVVEDILDVGLSIQNHLWYDRS
ALVTPAGQKFIQLSGYHFSSQDPCLFSKQLRCYGLVYYFLDMSDCISYCQRHLSNSTP
LIHFDRPSNGVHCLVPSESTTPIAGSLPVSALSSILLESCIQQSLLNTRTPTGSPVVR
QVEVLLPISSPFFERQNTLEYSLFALSNALVNGYQLIDLQPNHPDCATVAAILARLID
FSKDITTIRPSPAQFNIYADSPLTYSGENANFIRRLPCSSGNPIGPVVVGKTVDRAIG
WMPQFDPASSYNPDLAMDSLSKATTLPLRAKFSPFWSGPALFSFASCDRKNGIYDVSF
MSQFPSLYFSDDDTASRSRFSSYRAVKDRSLLKDTANLLYISNLASSHDHRLIPDSKT
MVYVGASGTHADNQPSVIKPLLNGSLPGVFKPLSVKQIGWEVTNGTICDIELPLATGT
FFFVYSDVDQVQAGDSDLDASSRRFCSQLDMLVKLTYTGGSVVAKCNFPTNLVWRHLF
TTVSPYFSSIHLLKPLIANNLELYVLLAEKLPVPEASFLPSADMVVFWRSQIQRYRTL
RDSFAVVPSIDSTLSLEDDLTVSVLNFVDVTSLSSVEDQHALAAFSVITSLGSQKLSI
HPYFDSYRTQLIGIITPHSRNVLDRLAYIPRVFPSTIDVQHRIMSSSDPEIFGFRSTY
WTQLSFFYDNALMQMDFTEAKHWLDLGTGPEARPLSFLPSDLPVTLCDTRPFIFPSGC
WATFTDFLSYDYLTTNVILSTGADVVSCVLTLGAACADANITLHEGVRQIVSQCVDAN
VKTLFLQLNCPLPSAGDVPRDVLELVQTNSTYIFHSLGRIEPFIPYSALLEIVEDLCP
GIVVEIKTMDPSLSWLNYAVHFNASVSSDDIVLAMRLSHFCPLFVFHLNRHSADFPDD
ARVGSPFTVLLSNYEDTSSYEVTLDNVTIATITAGSLVGFSSGVQVASKDDQLTLTIN
SASPGILSIIQVLPVRVSLGSCVIEAPDPSLSLIFPAKLDTSLSGTDLELFLSDWYDV
ALFYIDEANSRLLPVSDTKYEIYRKDQTPGTRTINYIFDRSDVFFKIVLCDVSPSGVG
RFIYRELPELSSPVWPEDVRTFLSLPFDSPMVIISPDGPVNYDGATVTPPTSWLTVDG
STCVVDGRPSFFVPPGRYGLVRV"
misc_feature 13..3861
/gene="lambda-C"
/locus_tag="AOrVsL3_gpp1"
/note="Reovirus core-spike protein lambda-2 (L2); Region:
Reovirus_L2; pfam06016"
/db_xref="CDD:283634"
ORIGIN
1 gcttttccac ccatggctca gattagaggc cttcggttgt caacgacgct ctcagctcct
61 ccttcacgaa agactttgac ttcacataca tacgatgagc taatatctgc gttgaagcta
121 actaccaaac catggcgacc acttaagtct agggatcgga attccatcac cgcggtgcaa
181 ctattattcc ccctcaatgg atatatcgaa ccaatgttca tactggagaa agacatgagc
241 tatgaggatt ttgagtcttg gttatcacct ctactttcag ctttggcgga tcaattgtta
301 cggcgttacc ccattgcgtc tcaccatggg cgactggtta atccattgct ttccaatgcc
361 atcgtcgcgg cctttctatc aaatgttcct tacttgcatg cgctggatca tctttttata
421 atccgcggcg ttgttgaaga cattctggat gtcggacttt ccattcagaa tcatctgtgg
481 tatgatcgta gtgcccttgt gacgccagct ggtcagaagt tcatccaact atctggttat
541 catttctcct ctcaagatcc ttgtttgttt tcaaagcaac tgcgttgcta tgggctcgtc
601 tattattttc tagacatgtc ggactgcatt tcatattgtc agcgacatct ctccaattct
661 actcctctta ttcatttcga tcgcccatct aatggagtac attgcttggt cccttccgaa
721 tcaacaactc caattgctgg ctccctacct gtgtcagcac tcagttctat cttgcttgag
781 tcttgtattc aacaatctct tctgaatact cgaactccta ccgggagtcc ggttgtgagg
841 caagttgagg tgttactacc tatttcgtcc cctttcttcg agcgtcaaaa tactttggaa
901 tactccttat ttgcgctctc taacgcgctg gttaatggct accagctaat agacttacaa
961 ccgaatcacc cggattgcgc gactgtagcc gctattttag ccaggctgat tgatttttcg
1021 aaggacatta ctaccattcg cccatctccc gcgcaattta atatttatgc tgacagtcca
1081 ctgacttata gtggtgagaa cgctaacttt atccggcgct taccctgctc ttctgggaac
1141 cctattggtc cagtcgtcgt cggcaaaact gttgaccgcg ctatcggttg gatgcctcaa
1201 tttgatcccg cctcttctta caatcctgat ttggctatgg actccttatc taaagccacg
1261 acgctaccgc ttcgcgcaaa attttcgccc ttctggtctg gtccagcttt attctctttc
1321 gcttcttgcg atcggaagaa tggaatttac gatgtctctt tcatgtccca atttccatct
1381 ttgtatttca gtgatgatga cacagcctct agatcccggt tctcttccta tcgcgccgtc
1441 aaagacagat ctttgctgaa ggacacagct aacttactgt atatctcgaa cttggccagt
1501 tcgcacgatc accgccttat tccagactcg aagaccatgg tgtacgttgg ggcttcaggt
1561 acgcacgcgg ataatcagcc atctgtcatc aagcctttac taaatgggtc acttccgggc
1621 gtctttaaac ctctctctgt gaagcagatt ggatgggagg tgactaatgg tactatttgc
1681 gacattgagt taccactcgc gacaggcaca tttttcttcg tctacagcga tgtcgatcaa
1741 gttcaggctg gtgactccga tcttgatgcc tcttcccgcc gcttctgctc ccaattggac
1801 atgcttgtca aattgacata cacaggtgga tccgtcgttg ctaaatgtaa cttcccaact
1861 aatctcgttt ggcggcacct ctttacgacc gtttctccat acttttcttc tattcatctg
1921 ctgaaaccac taatcgctaa taatttggag ttgtatgttc tattggctga gaagttgcca
1981 gttcctgaag cgtccttcct cccttctgca gatatggtcg tcttctggag atcacagatt
2041 caacgttatc gaactttacg tgattctttt gctgtagttc cctcgattga ctctactctt
2101 agcttggaag atgatttaac tgtttctgtt ctgaattttg ttgatgtgac ttctctctca
2161 tctgtggaag atcaacatgc cctggctgcc ttttcagtaa ttacttcatt agggtctcag
2221 aaactgtcga ttcaccccta ttttgatagt taccgtactc agctgatcgg gataatcact
2281 ccccactctc gtaacgtatt ggataggctg gcgtacatac cgcgtgtgtt tccctctacc
2341 attgatgttc agcatcgcat catgtcgtca tctgaccctg agatcttcgg tttccgctct
2401 acctattgga ctcagctctc attcttttat gacaatgcat tgatgcagat ggatttcact
2461 gaagcgaaac attggcttga cttagggaca ggacctgaag ctaggccttt atctttcttg
2521 ccctccgatc ttcccgtcac cctgtgtgat actcgacctt tcatatttcc ttctggttgc
2581 tgggccacgt tcacagattt tcttagttac gattacctaa ccacaaatgt tattctctcg
2641 accggagctg atgttgtatc ttgcgttctc actttaggtg ctgcttgtgc cgacgcgaac
2701 ataacgcttc atgagggagt tcgccagata gtttcacaat gtgtggatgc caatgttaag
2761 acgctcttct tacagctcaa ttgtcctttg ccttctgccg gtgatgtgcc ccgtgacgtt
2821 ttggaactgg tgcagactaa ctcgacttac attttccatt cgttgggccg cattgaacct
2881 tttattcctt actctgctct tcttgagatc gtggaggact tatgcccggg tatcgttgtg
2941 gagattaaga cgatggatcc atctctttcg tggctcaatt acgctgtaca ttttaatgca
3001 tctgtttctt ccgatgatat agtgttggct atgcggttgt ctcacttctg tcccctattc
3061 gtgtttcact tgaaccgtca ttcagctgat tttccagacg atgcgcgcgt aggctctcct
3121 tttacggttt tactgtccaa ttatgaggac acgagctctt atgaggttac tttagataac
3181 gtcacgattg ctacaatcac tgctggatct cttgtgggct tttcatcggg tgtccaggtc
3241 gcttcaaaag atgatcaact cactttaacc ataaactctg ccagtcctgg aattttgtct
3301 attattcagg tgctcccggt gcgtgtctct cttggcagct gtgtgataga ggccccagac
3361 ccttcactgt ccttgatttt cccggccaaa ctggacacat ctctatcggg cacagatctg
3421 gaattgttct tatctgattg gtatgatgtc gctttattct atattgatga agccaactct
3481 cgtttgttgc cggtgtcgga taccaagtac gaaatttaca gaaaagatca aactccaggt
3541 actaggacga ttaattatat cttcgatcgc tcagatgtct tcttcaaaat agtgttgtgt
3601 gacgtttctc catcaggagt tggccgattc atttatcgcg agctacccga gttaagttca
3661 cccgtgtggc ctgaagacgt tcgcaccttt ctatcgctac ctttcgactc tccaatggtc
3721 attatctctc ctgatggtcc tgtgaactac gatggtgcga ctgtgacgcc ccccacgtct
3781 tggttgacag ttgacggtag tacatgcgtt gtcgatggtc ggccttcatt ctttgtgcct
3841 cccggtagat atggcctggt gagagtctag acgaccgcgg gcctccagta gaagggtgtt
3901 actcatc
//
