LOCUS       NC_015129               2283 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Avian orthoreovirus segment M1, complete genome.
ACCESSION   NC_015129
VERSION     NC_015129.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE   1
  AUTHORS   Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
  TITLE     The genomic constellation of a novel avian orthoreovirus strain
            associated with runting-stunting syndrome in broilers
  JOURNAL   Virus Genes 42 (1), 82-89 (2011)
   PUBMED   21116842
REFERENCE   2  (bases 1 to 2283)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2283)
  AUTHORS   Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
            Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
            H-1143, HUNGARY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR694194.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Avian orthoreovirus"
                     /mol_type="genomic RNA"
                     /strain="AVS-B"
                     /db_xref="taxon:38170"
                     /segment="M1"
                     /country="USA"
     gene            13..2211
                     /gene="mu-A"
                     /locus_tag="AOrVsM1_gpp1"
                     /db_xref="GeneID:10220423"
     CDS             13..2211
                     /gene="mu-A"
                     /locus_tag="AOrVsM1_gpp1"
                     /codon_start=1
                     /product="mu-A protein"
                     /protein_id="YP_004226524.1"
                     /db_xref="GeneID:10220423"
                     /translation="MAYLATPVLGVGSRITALDRTIDAITLKPRIDLQDVYTLDPTLT
                     LRQIELISSGTSMDDIARGLLHRDWRRQSTIVLLPSRRSLLEYLLSNPSSCPDGLDRS
                     RLKGFQKRPNDFRVQDFFSPLITDTTSIATYSRWLNAHPTVYSTTHKVAGARVRLFGP
                     AKLYILSPDVLRELSILKSTDRILVVPTARVYVGCFPSASTSNCVLTARERWNAPDVH
                     PVVKAIQLAYDHQYRVTARYLSDPLVSALLLGTRSVKTLKVQPIEARAARSVGIRVQA
                     MTPPRGINTSIIQVVDLRLQCRHSLIPTERPFPLTFVGLPSCLLQHLDLTLSDDWVPI
                     RDHTGMFEMWFMILTLTCDKILDGRGSAVFLIPSSTNALSINYVQLTSTASPRPQSLA
                     ANASGRIDSIGLCMPKGSFKSTMIKFLTGLEICGTRVMYPDVVMDSDDVGDALDPTFE
                     TALYDALIALDPPFDVDKLASPTDLVNQEYVASHMYPTFLRLVNELLTPKASELYSER
                     SVEFRSLTYAHADSEFLNACWTARLMRCFINYHEEQNILLRPGRVGGVLFQVALSRCY
                     KMFATSTPASPLSLFLKSLFVPWIESAPLLASLTPNESSRVLAWYIPSSYWSDNGWCT
                     CDTHRHVTFSFIRGLPTDLSVLDLFDWSRFRATINVDTSLVELGADIRAVKVSVHWTS
                     QKPTVDVFDNRALFTPFQHYHLSLHCNCAPGRPFFAKNMKLYLSTVGGEH"
     misc_feature    13..1848
                     /gene="mu-A"
                     /locus_tag="AOrVsM1_gpp1"
                     /note="Reovirus minor core protein Mu-2; Region:
                     Reovirus_Mu2; pfam07781"
                     /db_xref="CDD:369516"
ORIGIN      
        1 gcttttctcg acatggccta tctagccaca cctgtgctag gagtcggttc tcgcattacc
       61 gccttagatc gtactattga tgctatcacg ttgaaacctc gaatcgacct ccaagatgtg
      121 tatacgcttg atcccacact gacgttgcgt cagatagagt taatctcttc gggaacttca
      181 atggacgata tcgctcgtgg actattgcac cgggactggc gtcgtcaatc caccattgtc
      241 ttgcttcctt cccgtcgctc tctccttgag tatttactgt ctaacccttc ctcttgtcca
      301 gatggtttag atcgctctcg actcaaagga tttcaaaagc gaccaaatga ttttcgtgtt
      361 caggatttct tttcgccatt gattacggac actacgtcaa tcgctaccta ctctcgatgg
      421 cttaatgctc atcctaccgt gtactctact acccataaag ttgccggcgc ccgagtgcgt
      481 ctctttggac ccgctaaatt gtacatcctg tcgcctgatg ttcttcgtga gttatccatt
      541 ttgaaatcca ctgatcgcat actcgttgtg cccacagctc gtgtgtatgt tggttgtttt
      601 cccagcgctt ctactagtaa ttgtgtactc actgcacgtg agcgttggaa tgctcctgac
      661 gttcatccag ttgtcaaagc aattcagtta gcatacgatc atcaatatcg tgtcaccgct
      721 cgctatctct ctgatcctct tgtctcagct ctccttcttg gaactcggtc ggtcaagacg
      781 ttgaaagtac agccgataga agctcgagcc gcacgatcag ttggcatccg cgtacaagcg
      841 atgacacctc cccgtggcat taacacctca attattcaag tcgttgatct taggctacag
      901 tgtcgtcatt ccctcatccc cactgaaagg ccattcccgt taacgtttgt cggcctccca
      961 tcgtgtttgc ttcaacattt ggatttaaca ttatctgatg actgggtgcc cattcgtgat
     1021 catacaggta tgtttgagat gtggtttatg attcttactc tcacttgtga taaaattctt
     1081 gacggacggg ggagcgccgt ttttctcatt cccagctcta ctaatgcact gtcaattaac
     1141 tatgtacagc tcacgtcgac cgcgtctcca cgtccccaat cgttggcagc taacgcatct
     1201 ggacggatag attccattgg actgtgtatg cccaaaggat ctttcaagtc gaccatgatt
     1261 aaatttctca ctggactaga aatttgcggc acgcgagtaa tgtacccgga cgtcgtgatg
     1321 gacagtgatg acgtgggtga cgctttggat cctacttttg aaactgccct atatgacgca
     1381 ttgatagctc ttgacccgcc ctttgacgtt gacaagttag ctagtcctac tgatttagtc
     1441 aatcaggagt atgttgcatc ccacatgtac ccgacgttct tgaggcttgt caatgagttg
     1501 ctgactccca aagcttcaga gttatactcg gagcgtagtg tcgaattccg atctctcact
     1561 tacgcgcatg ccgattctga atttcttaac gcttgctgga ccgctcgttt gatgcgctgc
     1621 tttatcaatt atcatgagga gcagaatatc ctgcttcgtc ctgggcgcgt tggtggtgta
     1681 ctattccagg ttgcgctgag tcgctgttat aagatgttcg ctacttctac tcctgcttcc
     1741 cctctgtcat tgttcctcaa gtcgttgttt gtcccctgga ttgaatctgc cccactgtta
     1801 gctagtctca cgccaaacga atcttctcgt gtgctagcat ggtatatccc ttcctcgtac
     1861 tggagcgaca atggctggtg cacttgtgac actcatcgtc acgtcacctt ttctttcatt
     1921 cgcggtcttc ctactgacct gtcggtgtta gatctatttg attggtctcg ctttcgtgcg
     1981 actataaacg tagacacatc tctagtggag ttgggcgctg atatccgtgc agttaaagta
     2041 tccgttcatt ggacatctca gaagcccact gtggacgttt ttgacaatcg tgcgcttttc
     2101 actcccttcc agcactacca tttgagtctc cattgtaact gcgcgcccgg tcgcccgttc
     2161 tttgcgaaga acatgaaact atatttgtcg acggttggag gcgagcactg acgggccatg
     2221 gggcggtgac acccagggag ggtatgctgg taaccctggg ttagtcgtct tgagatactc
     2281 atc
//