LOCUS       NC_015132               1645 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Avian orthoreovirus segment S1, complete genome.
ACCESSION   NC_015132
VERSION     NC_015132.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE   1
  AUTHORS   Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
  TITLE     The genomic constellation of a novel avian orthoreovirus strain
            associated with runting-stunting syndrome in broilers
  JOURNAL   Virus Genes 42 (1), 82-89 (2011)
   PUBMED   21116842
REFERENCE   2  (bases 1 to 1645)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1645)
  AUTHORS   Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
            Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
            H-1143, HUNGARY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR694197.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Avian orthoreovirus"
                     /mol_type="genomic RNA"
                     /strain="AVS-B"
                     /db_xref="taxon:38170"
                     /segment="S1"
                     /country="USA"
     gene            632..1612
                     /gene="sigma-C"
                     /locus_tag="AOrVsS1_gpp1"
                     /db_xref="GeneID:10220429"
     CDS             632..1612
                     /gene="sigma-C"
                     /locus_tag="AOrVsS1_gpp1"
                     /codon_start=1
                     /product="sigma-C protein"
                     /protein_id="YP_004226527.1"
                     /db_xref="GeneID:10220429"
                     /translation="MEGLTQSQRREVVGLILSLTSNVTINPGDLTELRERVSALESAN
                     ASLNEIIKGVLDQLVDLAQKLGNAAGAVVDLRGELNSLTASVQTIQSSLGSLTDSISD
                     LSSQVTTNASSPTNLRSMVAGLIADVTNLKRDVSNQGLQMTSLEQRVTSLESGTGSIP
                     TFAAPLKLDGGIVSLDLDPYFCSVDHNLTSYSASALLMNFQWLVRGEGGSSDSFDMNV
                     TAHSHGQRTDFMMSTTQSLTVTGNSVTLVFDLNALISPPSDYSRLIPCHGFQQATFPV
                     DLSFKRDDVTHSYQVYGSYTTPRIFKITFSPGNPVPAVIRFITVRTGIDT"
     misc_feature    <737..1096
                     /gene="sigma-C"
                     /locus_tag="AOrVsS1_gpp1"
                     /note="fibritin; Provisional; Region: wac; PHA02607"
                     /db_xref="CDD:177432"
     misc_feature    1094..1210
                     /gene="sigma-C"
                     /locus_tag="AOrVsS1_gpp1"
                     /note="Reovirus sigma C capsid protein triple beta spiral;
                     Region: Reo_sigmaC_M; pfam17750"
                     /db_xref="CDD:407622"
     misc_feature    1220..1609
                     /gene="sigma-C"
                     /locus_tag="AOrVsS1_gpp1"
                     /note="Reovirus sigma C capsid protein; Region:
                     Reo_sigmaC; pfam04582"
                     /db_xref="CDD:368009"
ORIGIN      
        1 gctttttcaa tcccttgtgt cgatgttccc gtatgtcatc tggttcatgt aacggtgcaa
       61 cttctatttt tggtaacgtt cactgtcagg cagcgcaaaa ctcggcgggt ggtgatcttc
      121 aagcgacttc ctctcttgtt gcttattggc cctacttggc tgcgggcggt ggtctgctcg
      181 ttgttattat tataattgtt ggcgctgttt gttgttgcaa ggctaaggtt aaagcggacg
      241 cagcccgaaa cgttttctac cgagagctgt tcgcacttaa ttcgggtaaa agtgatgcag
      301 gacctccgat ttaccaggtt tagtgtacga cgatttgagt tttcaccttt cgtcttagag
      361 gagtgcacta ctccatcttt cacgactata actaataccg atccggctct ctactttaac
      421 attgagtttc cgtcaagtca tcgtctctcc cccttcattc cagaactgtt gtctcagcct
      481 tgtaccgttc acgtttcatt gattcggaga ttcgctctct gtgcaacctt atctagtatt
      541 tgtgaatacg actgtgcgct actgccatcc atcaacgcta ttacgacgat ccctacacca
      601 ggtgcgtcat catctctgat tgttcattgg gatggaaggc ttaactcagt cacagcgaag
      661 agaggtcgtg gggctgatac tctcattgac ttcgaacgtg actataaatc ctggcgattt
      721 gacggaactg cgtgagcgcg tctcggcgtt agaatcggcc aatgcgtcgt tgaatgagat
      781 cataaaaggc gtgttagatc agttggtaga tttggcacag aagttgggca atgcggcggg
      841 tgctgtagtt gacctacgag gagagctgaa ctcattaact gccagcgtcc aaactatcca
      901 atcttctttg ggatcactca cggacagtat atcggatctt tctagccaag tgactactaa
      961 cgcctcttcg cccacgaatc tgaggagtat ggtggcgggt cttatagctg atgtgactaa
     1021 tcttaaacgt gacgtatcga atcagggtct tcaaatgacg agtctcgagc agcgtgtaac
     1081 tagtttggaa tctggtactg gatctattcc cacatttgct gctcccctta aattagatgg
     1141 cgggattgtt tcactcgatc tggaccctta cttttgttct gtggaccata atctcacgtc
     1201 gtattccgca agcgctctgc taatgaattt tcagtggctt gttcgaggtg agggagggtc
     1261 gtctgactca ttcgatatga atgtgacagc tcatagccac ggccagagga cagattttat
     1321 gatgtctacc actcagtcgt taactgttac tggaaattct gtcactctag tctttgatct
     1381 taatgcgctt atttctccac cctccgacta ttctcgcttg ataccatgtc atggtttcca
     1441 acaagcgacg tttcccgtgg acctttcgtt taagcgagac gacgtcacgc actcatatca
     1501 ggtgtatggt tcgtacacaa ctcctcgcat tttcaagata actttctccc ctggcaatcc
     1561 agtacctgcg gtcatacgtt tcataaccgt gcgtacgggc atcgatactt aaggtgtggc
     1621 gccgtacggg gattggttat tcatc
//