LOCUS       NC_015133               1324 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Avian orthoreovirus segment S2, complete genome.
ACCESSION   NC_015133
VERSION     NC_015133.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE   1
  AUTHORS   Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
  TITLE     The genomic constellation of a novel avian orthoreovirus strain
            associated with runting-stunting syndrome in broilers
  JOURNAL   Virus Genes 42 (1), 82-89 (2011)
   PUBMED   21116842
REFERENCE   2  (bases 1 to 1324)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1324)
  AUTHORS   Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
            Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
            H-1143, HUNGARY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR694198.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1324
                     /organism="Avian orthoreovirus"
                     /mol_type="genomic RNA"
                     /strain="AVS-B"
                     /db_xref="taxon:38170"
                     /segment="S2"
                     /country="USA"
     gene            16..1266
                     /gene="sigma-A"
                     /locus_tag="AOrvsS2_gpp1"
                     /db_xref="GeneID:10220431"
     CDS             16..1266
                     /gene="sigma-A"
                     /locus_tag="AOrvsS2_gpp1"
                     /codon_start=1
                     /product="sigma-A protein"
                     /protein_id="YP_004226528.1"
                     /db_xref="GeneID:10220431"
                     /translation="MARAVYDFFSTPFGNRGLATNRTQLSSLLTSSNSPWQRFLSSMT
                     PLTAPGIVSTPEAPYPGSLMYQESMLHSATVPGVLGNRDAWRTFNVFGLSWTDEGLSG
                     LVAAQDPPPAAPYQPASAQWSDLLNYPRWANRRRELQSKYPLLLRSTLLSAMRAGPVL
                     YVETWPNMISGRLADWFMSQYGNNFVDMCARLTQSCLNMPVEPDGNYDQQMRALISLW
                     LLSYIGVVNQTNTISGFYFSSKTRGQALDSWTLFYTTNTNRVQITQRHFAYVCARSPD
                     WNVDKSWIAAANLTAIIMACRQPPMFANQGVINQAQNRPGFSMNGGTPVHELNLLTTA
                     QECIRQWVVAGLVSAAKGQTLTQEANDFSALIQADLGQIKAQDDALYNQQPGYARRIK
                     PFVNGDWTPGMTAQALAVLATFTA"
     misc_feature    118..1251
                     /gene="sigma-A"
                     /locus_tag="AOrvsS2_gpp1"
                     /note="Reoviral Sigma1/Sigma2 family; Region: Sigma_1_2;
                     pfam03084"
                     /db_xref="CDD:367326"
ORIGIN      
        1 gctttttctc ccacgatggc gcgtgccgta tacgacttct tttctacgcc tttcgggaat
       61 cgtggtctag caacgaatcg tactcaacta tcatcactac taacaagctc gaattcccca
      121 tggcaacgat ttctatcttc aatgactcca ttgacggcgc caggtattgt ctcaacacct
      181 gaagcaccct atccgggctc actgatgtat caagagtcca tgcttcacag tgccactgtc
      241 cctggagtac ttggtaatcg tgatgcttgg cgtacgttta atgtcttcgg gctttcatgg
      301 actgacgaag gactgtcagg actggtggct gctcaagatc ctcctcccgc cgccccgtat
      361 cagccagcct ctgctcagtg gtcagatctc ctcaactacc ccagatgggc gaacagacgt
      421 cgtgagttac aatcaaaata cccgcttctg cttcgatcca cgctgctttc tgccatgcga
      481 gctggtcctg ttctttatgt tgagacgtgg ccgaatatga tctcaggacg gctagccgac
      541 tggttcatgt cccaatatgg caacaatttc gttgacatgt gtgccaggtt gacacagtct
      601 tgtttgaaca tgcctgtcga acctgatggg aattacgatc agcagatgcg tgctttgatc
      661 agtttgtggc tcctttcgta cattggggta gtcaatcaga ctaataccat cagcggcttc
      721 tacttctcct cgaagactcg gggtcaagcg ttagacagtt ggaccttatt ttacaccaca
      781 aacaccaatc gtgtccaaat tacccagagg catttcgctt acgtgtgtgc acggtcccct
      841 gattggaacg tggataaatc gtggatcgct gcggcgaatt tgaccgctat catcatggcc
      901 tgtcgtcaac cgccaatgtt tgccaaccaa ggcgttatca accaagcgca gaaccggcct
      961 ggcttttcca tgaatggagg gacgcccgtt cacgagctca acttactgac taccgcgcag
     1021 gaatgcatta ggcagtgggt ggtagctggt ctggtgtcag cggcgaaggg gcaaacatta
     1081 acacaagagg ctaatgactt ttcggccctc atccaggcag atctaggaca aatcaaggcg
     1141 caggatgatg ctctgtacaa tcagcagcca ggatacgcaa ggagaataaa acccttcgtt
     1201 aacggtgact ggacaccagg catgaccgcg caagctctgg ccgttctagc cacttttacc
     1261 gcctaggcgt agggtcgtac gctgcccgag tccagccctc cggcagcacg tgggtgtact
     1321 catc
//