LOCUS       NC_015135               1192 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Avian orthoreovirus segment S4, complete genome.
ACCESSION   NC_015135
VERSION     NC_015135.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Avian orthoreovirus
  ORGANISM  Avian orthoreovirus
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus.
REFERENCE   1
  AUTHORS   Banyai,K., Dandar,E., Dorsey,K.M., Mato,T. and Palya,V.
  TITLE     The genomic constellation of a novel avian orthoreovirus strain
            associated with runting-stunting syndrome in broilers
  JOURNAL   Virus Genes 42 (1), 82-89 (2011)
   PUBMED   21116842
REFERENCE   2  (bases 1 to 1192)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2011) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1192)
  AUTHORS   Banyai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2010) Banyai K., Hungarian Academy of Sciences,
            Veterinary Medical Research Institute, Hungaria krt. 21., Budapest,
            H-1143, HUNGARY
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR694200.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Avian orthoreovirus"
                     /mol_type="genomic RNA"
                     /strain="AVS-B"
                     /db_xref="taxon:38170"
                     /segment="S4"
                     /country="USA"
     gene            24..1127
                     /gene="sigma-NS"
                     /locus_tag="AOrVsS4_gpp1"
                     /db_xref="GeneID:10220435"
     CDS             24..1127
                     /gene="sigma-NS"
                     /locus_tag="AOrVsS4_gpp1"
                     /codon_start=1
                     /product="sigma-NS protein"
                     /protein_id="YP_004226530.1"
                     /db_xref="GeneID:10220435"
                     /translation="MDNTVRVGVSRNTSGAAGQTVFRNYYLLRCNISADGRNATKAVQ
                     SHFPFLSRAVRCLSPLAAHCADRTLRRDNVKQILTRELPFPSDLINYAHHVNSSSLTT
                     SQGVEAARLVAQVYGEQLSFDHIYPTGSATYCPGAIANAISRIMAGFVPHEGDNFTPD
                     GAIDYLAADLVAYKFVLPYMLDIVDGRPQIVLPSHTVEEMLSNTSLLNSIDASFGIES
                     KSDQRMTRDAAEMSSRSLNELEDHEQRGRMPWKIMTAMFAAQLKVELDALADERVESQ
                     ANAHVTSFGSRLFNQMSAFVPIDRELMELALLIKEQGFAMNPGQVASKWSLIRRSGPT
                     RPLSGARLEIRNGNWTIREGDQTLLSVSPARMA"
     misc_feature    24..1121
                     /gene="sigma-NS"
                     /locus_tag="AOrVsS4_gpp1"
                     /note="Sigma NS protein; Region: PolyG_pol; pfam01518"
                     /db_xref="CDD:250679"
ORIGIN      
        1 gctttttgag tccttgtgca gccatggaca acaccgtgcg tgttggagtt tcccgcaaca
       61 catccggcgc agctggtcag actgttttta gaaactacta cctactacga tgcaacatct
      121 cagctgacgg tcgtaatgca acaaaagctg tgcaatccca ctttccattc ctttctcgtg
      181 ctgtccgatg cttatctcct ctagctgctc attgtgccga taggactctc cgtcgtgaca
      241 acgtgaagca gattctcact cgtgaactac catttccatc ggatctaatc aattacgcgc
      301 accacgtgaa ttcatcctcg cttactactt ctcagggtgt tgaggcagcc cgtctggtgg
      361 ctcaagttta tggagagcaa ctgtcatttg accacatcta ccccactggt tctgcaacat
      421 actgccctgg agcgattgcg aatgcgattt cccgtatcat ggctggcttc gtcccccacg
      481 aaggcgacaa ctttacccca gatggtgcca tcgattatct cgctgcagat ctggtcgcgt
      541 acaagtttgt gcttccttac atgctagaca ttgtggacgg gcgtccgcag attgttctcc
      601 catctcacac tgttgaggaa atgctgtcca acacgagctt gcttaattca attgacgctt
      661 catttggtat tgaatctaag agcgatcaac gcatgacccg tgacgcggct gaaatgagtt
      721 ctcgttcact taatgagctt gaggatcacg agcagagggg tcgaatgcct tggaaaatca
      781 tgacggcgat gttcgcggcg caactgaagg tggagctgga tgccctagct gatgagcggg
      841 ttgagtctca ggctaatgct cacgtgacat cttttgggtc tcgtctgttc aaccagatgt
      901 ctgcttttgt cccgattgat cgtgagttga tggagctggc tctactcatt aaagaacaag
      961 gtttcgcaat gaatccaggg caagttgcat ctaaatggtc gctgatacga cgatctggtc
     1021 ccactcgccc actctcaggc gcgcgccttg agatcagaaa tggtaactgg acgattcgtg
     1081 aaggtgacca gacacttctg tctgtctctc cagctaggat ggcgtaaacg ggacccatgg
     1141 tgcgggtgag gggccgccac accctctgcc gcgacctgga ctcttattca tc
//