LOCUS NC_015396 2383 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Avian gyrovirus 2, complete genome.
ACCESSION NC_015396 NC_015630
VERSION NC_015396.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avian gyrovirus 2
ORGANISM Avian gyrovirus 2
Viruses; Anelloviridae; Gyrovirus; Gyrovirus galga1.
REFERENCE 1 (bases 1 to 2383)
AUTHORS Rijsewijk,F.A., Dos Santos,H.F., Teixeira,T.F., Cibulski,S.P.,
Varela,A.P., Dezen,D., Franco,A.C. and Roehe,P.M.
TITLE Discovery of a genome of a distant relative of chicken anemia virus
reveals a new member of the genus Gyrovirus
JOURNAL Arch. Virol. 156 (6), 1097-1100 (2011)
PUBMED 21442232
REFERENCE 2 (bases 1 to 2383)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2383)
AUTHORS Rijsewijk,F.A.M., Teixeira,T.F., dos Santos,H.F., Cibulski,S.P.,
Varela,A.P., Dezen,D., Franco,A.C. and Roehe,P.M.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2010) Microbiol. Dept. Vir. lab., Fed. Univ.
UFRGS, Avenida Sarmento Leite 500, Porto Alegre, RS CEP 90050-170,
Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to HM590588.
On Aug 1, 2016 this sequence version replaced NC_015630.1.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2383
/organism="Avian gyrovirus 2"
/mol_type="genomic DNA"
/isolation_source="serum of diseased chicken in poultry
production unit"
/host="Gallus gallus"
/db_xref="taxon:1002273"
/clone="Ave 3"
/country="Brazil"
/collection_date="14-Jul-2006"
regulatory 27..32
/regulatory_class="polyA_signal_sequence"
repeat_region 224..353
/note="imperfect 21nt repeats with putative enhancer
function"
/rpt_type=direct
/rpt_unit_range=224..245
regulatory 402..409
/regulatory_class="TATA_box"
gene 450..1145
/locus_tag="AvGV2_gp1"
/db_xref="GeneID:10447553"
CDS 450..1145
/locus_tag="AvGV2_gp1"
/note="VP2"
/codon_start=1
/product="putative dual-specificity protein phosphatase"
/protein_id="YP_004376203.1"
/db_xref="GeneID:10447553"
/translation="MSSGGLGDCSACETRAAGGSELPLRQEGQLGPSGAGSTGKTLNA
DPPLSPTSNNYSVRTINGIRASNKFVSASRNDLDRDPNWYRVNYNYSIATWLRQCARS
HDEICTCGRWRSHWFQEASGLVTQETQTDQLARDLRRLQRKGEAAKRKLDYLKRRGTP
HKKTKTVTWQDYDDDDLVDALASTTEDDGTGDTDCDEDAIPGGVNFDMRVEDPLIAAL
RGGSSTHTRAPMW"
misc_feature 684..>794
/locus_tag="AvGV2_gp1"
/note="TT viral ORF2; Region: TT_ORF2; pfam02957"
/db_xref="CDD:251643"
gene 577..951
/locus_tag="AvGV2_gp2"
/db_xref="GeneID:10447551"
CDS 577..951
/locus_tag="AvGV2_gp2"
/note="putative apoptosis function"
/codon_start=1
/product="VP3"
/protein_id="YP_004376204.1"
/db_xref="GeneID:10447551"
/translation="MQTPRSRRQATTTRSELLTAYEHPTSSCPPAETTSIEIQIGIGS
TIITLSLPGYASVRVLTTRSAPADDGGVTGSRRLADSSHRRPRRTSSPEIYVGFSAKE
RRQKENLITLREEGPPIKKLRL"
misc_feature 631..948
/locus_tag="AvGV2_gp2"
/note="Chicken anaemia virus VP-3 protein; Region:
CAV_VP3; pfam04771"
/db_xref="CDD:282606"
gene 953..2335
/locus_tag="AvGV2_gp3"
/db_xref="GeneID:10447552"
CDS 953..2335
/locus_tag="AvGV2_gp3"
/note="VP1"
/codon_start=1
/product="putative nucleocapsid"
/protein_id="YP_004376205.1"
/db_xref="GeneID:10447552"
/translation="MARLRRRRPRGRFGFYHRGRWHWRHRLRRRRYSRRGKFRYARRR
SFDRRVKRRIFNPHPGSYVVRLPNPYNKLTLFFQGIVFIPEAQAFVKSTYTKTNLTVC
HVASINVNLREFMLATMPLDAKSKIGGPNPYPQHLQGCQWSAQTTQDAWPYSAGMSET
KRPSVPPSEWWRWALLVMHPRAPGRFYNAPKLMTLDAMGDLLGGWQLFRHVRTKFRVL
ATMGQGAFSPVASLLVQNDYWSRGHLEGFPVKGAPPMCTMQRKTQQYGNVEANAPADE
QWLPVNPPDPPVYPNQGGCSQNVAPGIYRLAGLQDSSRCFYSKACFPSFAALSAMGAP
WSFPSTQKPIQRGSFNKHSITGTGDPQGRRWLTLVPKGVEWITDDTMEQTQLDTDIAT
LFLAQGSPMWAPYKFGTFHKAMAITAMQTTPWCVVKVRSIWQLGNQRQPYPWQVNWYN
EHTATDRYNP"
misc_feature 1061..2302
/locus_tag="AvGV2_gp3"
/note="Gyrovirus capsid protein (VP1); Region:
Gyro_capsid; pfam04162"
/db_xref="CDD:282072"
ORIGIN
1 ggatcctccc ccccggaccc cccgtcaata aataattaaa taaagcaaat tgaattattt
61 atttattttc ggcgcgcgcg gcagcagcct gtacacagag acgtcgctcg ggtcctccgg
121 accctcgctc ctcaaccttt tcttattaaa atcatcaccc agcgcgacaa acgccacaag
181 gcgtggtaac caacgatatg taagtaaact gagactcata ccggtacagg ggggtacgtc
241 atcatgtaca ggggggtacg tcaccatgta caggggggta cgtcaccatg tacagggggg
301 tacgtcacca tgtacagggg ggtacgtcac catgtacagg ggggtacgtc acagccaatc
361 agaattgagc acgcccagaa acgcccctgg gcgggcagat cctatcaatt aggggatata
421 agcagagcgc ataccggtcg gcagtaggta tgtcatccgg cggtctcggg gattgcagcg
481 cctgtgagac ccgagccgct gggggcagtg aattgccgct taggcaagag gggcaacttg
541 ggcccagcgg agccggatcc acgggcaaga cactaaatgc agaccccccg ctctcgccga
601 caagcaacaa ctactcggtc agaactatta acggcatacg agcatccaac aagttcgtgt
661 ccgccagcag aaacgacctc gatagagatc caaattggta tcgggtcaac tataattact
721 ctatcgctac ctggctacgc cagtgtgcgc gttctcacga cgagatctgc acctgcggac
781 gatggaggag tcactggttc caggaggcta gcggactcgt cacacaggag acccagacgg
841 accagctcgc cagagatcta cgtcggcttc agcgcaaagg agaggcggca aaaagaaaac
901 ttgattacct taagagaaga gggacccccc ataaaaaaac taagactgtg acatggcaag
961 attacgacga cgacgacctc gtggacgctt tggcttctac cacagaggac gatggcactg
1021 gagacacaga ctgcgacgaa gacgctattc ccggaggggt aaatttcgat atgcgcgtag
1081 aagatccttt gatcgccgcg ttaagaggag gatcttcaac ccacacccgg gctcctatgt
1141 ggtaaggcta ccaaaccctt acaataagct taccctcttt ttccaaggca ttgtgttcat
1201 tccggaggct caagcatttg ttaaaagtac ttatacaaag actaatctta cggtttgcca
1261 tgtagcctca ataaatgtta acctccgaga atttatgctt gctacaatgc ctttagatgc
1321 aaagagcaaa atcggaggcc ctaatcctta tcctcagcac ttgcaggggt gccaatggtc
1381 agcacaaacg acgcaggacg catggccgta ctcggcgggc atgtcagaga caaaaagacc
1441 cagcgtacca ccgagtgagt ggtggcgctg ggctctcctg gtgatgcacc ctagagcacc
1501 tggcagattt tacaatgccc ctaagctaat gactctggac gctatgggag acctcttagg
1561 gggctggcaa ctattccgtc atgttagaac caagttcaga gtgctggcca ctatgggcca
1621 gggtgcattc tcaccggttg caagcctcct tgtgcaaaat gactattgga gcagggggca
1681 cttagagggc ttcccagtga aaggtgcacc gcctatgtgc accatgcaaa gaaagactca
1741 gcaatacggc aacgtggagg cgaacgctcc agcagatgag cagtggctac cggtgaatcc
1801 cccagaccca ccagtgtacc ctaaccaggg aggatgctcc caaaacgtgg ctccaggcat
1861 ataccggctt gcaggcttac aagacagtag cagatgcttt tattcaaagg cttgtttccc
1921 cagctttgca gcgctttctg ctatgggggc accctggtca tttcctagca ctcaaaaacc
1981 cattcaaaga ggctcattta acaaacattc catcacgggg acaggggacc cccagggccg
2041 acggtggtta acacttgtgc ctaaaggcgt ggaatggatc actgatgaca ccatggaaca
2101 aacgcaactg gacacagaca ttgcaacact cttcttagct caaggcagcc caatgtgggc
2161 accctacaaa ttcgggactt ttcacaaggc aatggccata acagcaatgc agaccacccc
2221 ctggtgcgtg gtgaaagtac ggtccatctg gcagctcggc aaccaaagac agccgtaccc
2281 atggcaagtg aactggtaca acgagcatac tgcaacggac agatacaacc cgtaattggg
2341 ggggggggtt ttgccccccc cacaaacccc ccccccccgg ggg
//
