LOCUS NC_021098 2431 bp RNA linear VRL 13-AUG-2018
DEFINITION Hop trefoil cryptic virus 2 isolate IPP_GelbSK segment RNA 1,
complete sequence.
ACCESSION NC_021098
VERSION NC_021098.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Hop trefoil cryptic virus 2
ORGANISM Hop trefoil cryptic virus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes;
Durnavirales; Partitiviridae; Betapartitivirus.
REFERENCE 1 (bases 1 to 2431)
AUTHORS Lesker,T., Rabenstein,F. and Maiss,E.
TITLE Molecular characterization of five betacryptoviruses infecting four
clover species and dill
JOURNAL Arch. Virol. 158 (9), 1943-1952 (2013)
PUBMED 23584419
REFERENCE 2 (bases 1 to 2431)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2431)
AUTHORS Lesker,T. and Maiss,E.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2012) Institute of Plant Diseases and Plant
Protection, Gottfried Wilhelm Leibniz University Hannover,
Herrenhaeuser Str. 2, Hannover 30149, Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JX971980.
GenBank Accession Numbers JX971980-JX971981 represent the complete
genome of Hop trefoil cryptic virus 2 isolate IPP_GelbSK.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2431
/organism="Hop trefoil cryptic virus 2"
/mol_type="genomic RNA"
/isolate="IPP_GelbSK"
/host="Medicago lupulina"
/db_xref="taxon:1323523"
/segment="RNA 1"
/country="Germany"
/collection_date="2011"
gene 110..2350
/locus_tag="L061_s1gp1"
/db_xref="GeneID:15331774"
CDS 110..2350
/locus_tag="L061_s1gp1"
/note="87.2 kDa"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="YP_007889825.1"
/db_xref="GeneID:15331774"
/translation="MPFNSVRNYLEERSVRVKKEMMTYQSSNRDPDAILEQSQDPDYR
RYYDNARYNPSNDLKYRMLSKEYSTLVEAYRLRNDDKHQPYELHQPVPQDAAPVPSYR
APAPGIKPVPLMYHYGHVIHDPVSLTESAIDDDSDTLPDSDEPTVTHFGYPINKRIYD
LICNRYPEYLSVISAYCRPIGTVDATFKDFNKEQIPSGPIDPNRKEEVLTHIFRFLDA
QPYLPLHFVDTQFCKTPLVTGTGYHNRYSFKQKAHAKYSHPEEYAQMPTSKGYFYNAT
YENARTLVHYIKEYGLPFNIHYTPEDVDFTEEQIQAYIDSANNFFNDYPTLLFTRNHI
SKRDGTLKVRPVYAVDDLFIIIELMLTFPLTVQARKQSCCIMYGLETIRGSNHYIERL
ARSYSTYFSLDWSSYDQRLPRVITDIYYTDFLRRLIVINDGYQPTYEYPTYPDLDEHK
MYTRMDNLLTFLHTWYNNMTFVLADGYAYRRTYCGVPSGLYNTQYLDSFGNLFLIIDA
MIEFGFRTPEIDDFILLVLGDDNTGMTVISIDRIYDFITFLEIYALTRYNMVLSTTKS
VLTTLRSKIETLGYQCNHGSPKRDISKLIAQLCYPENGLKPHTMASRAIGIAYASAGQ
DYMFHSFCQDVYNMFRLDYKPDARTTLNFQRQIYHNLDDGIPDLATPVVPPFPSIFEV
REMYSRYQGPLTYAPKWNFAHFINSPDVTPAHYKTMRMYEIENNITIRPAPTFETVVP
TTRNFP"
misc_feature <1133..1999
/locus_tag="L061_s1gp1"
/note="Reverse transcriptase (RT, RNA-dependent DNA
polymerase)_like family. An RT gene is usually indicative
of a mobile element such as a retrotransposon or
retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons, retroviruses, group...;
Region: RT_like; cl02808"
/db_xref="CDD:445932"
ORIGIN
1 agatttttta taagcggccc ccgcctataa tatttagaat tcacattcgt ctaatttttc
61 cccttcacaa ataactgcta acccctttta ttttaactaa cgtctcacaa tgccgttcaa
121 ctcagttcgt aattatctcg aagaacgctc cgttcgtgtt aagaaagaaa tgatgacata
181 tcagtcatca aaccgtgacc ccgatgcaat tcttgagcaa tctcaagacc cggactatcg
241 tcgttattat gacaatgccc gatataatcc ttcaaatgat ttgaagtatc gtatgctatc
301 aaaggaatac tctactctag ttgaagctta ccgtctcaga aatgatgaca aacaccaacc
361 gtatgaactt catcagccag tcccacaaga tgctgctccc gttccttcct accgtgcccc
421 tgctcctgga ataaaacccg ttcccctcat gtaccactat ggacatgtta ttcacgatcc
481 tgtctctctc accgaatcag caattgatga tgattccgat acccttcctg actccgatga
541 gcccactgtt actcactttg gatacccaat caataagcgt atttacgatt taatttgtaa
601 tcgctatcct gaatacctaa gtgtaattag tgcttattgt cgtcctattg gaacagttga
661 tgctacattt aaggatttta ataaggaaca gatcccatct ggacctattg atcccaatcg
721 taaagaagaa gtgctaaccc acatctttcg attcttagat gctcagcctt acctgcccct
781 tcatttcgtt gatacccagt tttgcaaaac accacttgta actggaacag gctaccacaa
841 ccgctattct ttcaaacaga aagcgcacgc taagtactct catcctgagg aatacgctca
901 aatgccaacc tcaaaaggct atttctacaa tgccacttat gagaatgctc gcactcttgt
961 tcattatatt aaggagtatg gattaccttt taatatccat tacactcctg aagatgttga
1021 cttcacagaa gaacagattc aagcctatat tgactctgcc aacaacttct ttaatgacta
1081 cccgacgtta ttgttcaccc gcaaccacat ctctaaacga gatggaactc ttaaagttcg
1141 tcccgtttat gctgttgatg acttgtttat tataatcgag ttgatgttga ctttccccct
1201 caccgtccaa gctcgaaaac agtcttgttg cattatgtat ggacttgaaa ccattcgtgg
1261 ttccaaccat tacattgaac gcctagctcg ttcgtattcg acctacttct cccttgactg
1321 gtccagttat gaccaacgac tccctcgcgt cattactgat atttattaca ctgacttcct
1381 ccgaagactc atagtaatta acgatggata ccaaccgacc tatgaatacc caacctaccc
1441 tgaccttgat gaacacaaaa tgtacacaag aatggataat ttacttacct ttctccatac
1501 ctggtacaac aacatgacct tcgttttagc tgatggttat gcctaccgca gaacttattg
1561 cggcgtaccc tctggtctgt acaacactca atacctcgat tcttttggta atctatttct
1621 aattatagat gctatgatcg aattcggttt cagaacccct gagatcgatg atttcattct
1681 ccttgtcctt ggagatgata atactggtat gacggtcatt tcaattgacc gaatctatga
1741 cttcatcacc tttcttgaaa tttacgcgct aacccgatat aatatggtcc tttcaacgac
1801 caaatccgtg ttaacaacgt tacgctctaa aattgagact ctcggttacc aatgtaacca
1861 cggttctcct aagcgtgata tttccaagct cattgcccag ctctgttacc cagagaatgg
1921 actaaagcca catactatgg cttcaagagc aattggaatt gcgtatgcct ctgctggcca
1981 agactacatg tttcactctt tttgtcaaga tgtgtataat atgtttaggt tagactataa
2041 acctgatgct cgcaccactc tgaattttca acgtcaaatt tatcataatt tagatgatgg
2101 aataccagat cttgcaacac cagtcgtgcc accattccct tcgatttttg aagttcgtga
2161 aatgtactcc cgttaccaag gtccactgac ctatgctcct aaatggaatt tcgctcactt
2221 tatcaattcc ccggacgtga cacccgccca ctacaaaact atgcgcatgt atgaaattga
2281 aaataacatt acaattcgac ctgcccctac ttttgaaacg gtcgtgccca ccacaagaaa
2341 tttcccgtga tttttttgtg cttaatagca tgaaaatatt tctcgctaat ttaaaaaaaa
2401 aaaaaaaaca aaaaaatcaa aataaatccc t
//
