LOCUS NC_021099 2349 bp RNA linear VRL 13-AUG-2018
DEFINITION Hop trefoil cryptic virus 2 isolate IPP_GelbSK segment RNA 2,
complete sequence.
ACCESSION NC_021099
VERSION NC_021099.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Hop trefoil cryptic virus 2
ORGANISM Hop trefoil cryptic virus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes;
Durnavirales; Partitiviridae; Betapartitivirus.
REFERENCE 1 (bases 1 to 2349)
AUTHORS Lesker,T., Rabenstein,F. and Maiss,E.
TITLE Molecular characterization of five betacryptoviruses infecting four
clover species and dill
JOURNAL Arch. Virol. 158 (9), 1943-1952 (2013)
PUBMED 23584419
REFERENCE 2 (bases 1 to 2349)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2349)
AUTHORS Lesker,T. and Maiss,E.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2012) Institute of Plant Diseases and Plant
Protection, Gottfried Wilhelm Leibniz University Hannover,
Herrenhaeuser Str. 2, Hannover 30149, Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JX971981.
GenBank Accession Numbers JX971980-JX971981 represent the complete
genome of Hop trefoil cryptic virus 2 isolate IPP_GelbSK.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2349
/organism="Hop trefoil cryptic virus 2"
/mol_type="genomic RNA"
/isolate="IPP_GelbSK"
/host="Medicago lupulina"
/db_xref="taxon:1323523"
/segment="RNA 2"
/country="Germany"
/collection_date="2011"
gene 91..2112
/locus_tag="L061_s2gp1"
/db_xref="GeneID:15331776"
CDS 91..2112
/locus_tag="L061_s2gp1"
/note="75.4 kDa"
/codon_start=1
/product="coat protein"
/protein_id="YP_007889826.1"
/db_xref="GeneID:15331776"
/translation="MSTEETAPQTKAIKNQNVVLSFEDGKPPGPVSDFMSLFRSNSCA
HTDTANQWIIDVFPNMTPILMYVMTKAQHHSEATDYRLHSKSSVFTICMYYMSIIYGY
FLLNDLHSRPTQSAHARNWVENSWKSSFAKFLMTLPVPEFLLPILAQFHPFNTDRTKN
VFFSPSAAGFDHDQFFGRVYPLNMFAVIHDCTATLPGNSTRTQVLQDLFSKVLYTVNA
PGFTCLIPDLFGLTLDQTVNTTVNYMNSRLYQVFSSLFNPVLFRDSQRRSSLAALSFT
PPTYTTNHINAYDYMFAAYPANLRELQVVLQSVSAIIKDVAECKIPLGTYVADYSSPS
IIHHGYSSYALPTWSHSETEQKVDRFENATTFNLVTEDARAQDICFLQRPTQAIPHEH
NVTDLIFTAAGAPDTDIPLPANHAIVRRFPFCLRLDAPAENGFPRHDNEDLVKFSDDT
HSAPGVLVLDTIGDGVLSAHLPTLTGKIIESFELDGSTIEMPDVRKSLGMQNCMFADS
AVAYKYVRPGSYWHPRAAGSTLPPLNRAPPNSRPRLPASSLLHDRTKVMLPQLNVRIN
AALNDNALPGLTRVTPVNVVRYTQSFLGFRTVDSSNNAANLDAVPGMTEGLLMLWSPY
TYTPYESGDYPFADLSASRHYYLTNLRTIFGTDYNLVSVKHPYEAFPVV"
ORIGIN
1 agatttttct aaagcggccc cgctagaaat taagaattca cattcgtcta cattatcaag
61 ttttcctgaa cctctgctct aatccttaag atgtctactg aagaaactgc tcctcagact
121 aaggcaatca agaaccaaaa tgttgtcctc tcctttgaag atggaaaacc acctggtccc
181 gtctctgact tcatgtcttt gttccgctca aactcttgtg cacacactga tactgctaat
241 caatggatca ttgatgtttt ccctaacatg actcccattc tcatgtacgt catgaccaaa
301 gcccaacacc attctgaagc tactgactat cgtctccact ccaagtcatc tgtcttcacc
361 atctgtatgt actacatgtc catcatttat ggctacttct tgttgaatga tttacattcc
421 cgccccactc aatctgccca tgctcgcaac tgggttgaga actcttggaa atcctccttt
481 gctaagttcc ttatgacact tcccgtgcct gaatttctgc ttcccatcct tgctcagttc
541 cacccattca ataccgacag gactaagaat gttttcttta gtccctccgc tgctggattt
601 gaccatgacc aattctttgg ccgtgtctat cctttgaaca tgtttgctgt aatccatgac
661 tgcactgcta ccctccctgg taattctacc agaacccaag tcctacaaga ccttttctca
721 aaggtcctat acactgttaa cgcccctggt ttcacttgtc tgattcctga tctatttggt
781 cttaccctcg atcaaacagt taacaccact gttaattaca tgaattccag actttaccaa
841 gtcttttcat cactgtttaa tcccgtgtta ttccgcgact ctcagcgccg ctcatccctt
901 gctgcactct ctttcacccc gcctacatat acaaccaatc atattaatgc atatgactac
961 atgtttgctg cctatcctgc aaatctccgt gaattgcaag ttgtcctcca atccgtctct
1021 gccattatta aagatgttgc tgaatgtaag atacccctcg gtacctatgt tgctgattat
1081 tcttctccat ccattatcca ccatggatac tcctcctatg ctctcccaac ttggtcccat
1141 tctgagaccg aacaaaaagt tgaccgattt gaaaatgcta ccactttcaa tctcgtcact
1201 gaagatgcaa gagcccaaga tatctgtttt ctccaacgcc ccactcaagc tatcccacat
1261 gaacacaatg tgactgatct catattcacc gctgctggcg ctcctgatac cgacattccc
1321 ctgcctgcta atcatgcaat cgttcgtcga tttccgttct gcctccgcct tgatgcccct
1381 gctgaaaatg gcttccctcg ccatgacaat gaagatttag ttaagttttc tgatgatacc
1441 cacagtgccc ctggcgttct agtcctcgat accatcggtg atggtgtact ctctgctcac
1501 ctcccgactc tcactggaaa aataatcgag tcatttgaac tcgatggttc cacaatcgaa
1561 atgcctgatg taaggaaatc actcggcatg caaaactgca tgttcgctga ctctgccgtc
1621 gcatataaat atgtgcgccc tggctcctac tggcaccctc gcgccgctgg atctactctt
1681 cctccactga atcgagctcc acccaattct cgtccccgtc tcccggcttc gtctctgctc
1741 catgatagaa ccaaagttat gctgcctcaa ctcaatgttc ggattaatgc tgctctcaat
1801 gacaatgctc tccctggtct tacccgtgtt acgcctgtca atgttgtccg ctacacccaa
1861 tctttccttg gattccgcac agttgatagt tccaataatg ctgcaaacct cgatgctgtc
1921 cccgggatga ctgaaggtct tctgatgctc tggtctccct acacatacac tccgtatgag
1981 tctggtgatt atccattcgc tgatctcagt gcttctaggc actattatct gaccaacctc
2041 cgtaccatct ttggtactga ctacaacttg gtttcagtta agcatcccta tgaagctttc
2101 cctgtcgttt aagcaattac tctctttcct ttaatgcaat ttaaagtttt tgatgtttaa
2161 ttggtttcct ttaatgacaa tcgcgtgtat actacgcggt tcttttgttt cgtttttctt
2221 ctgaactttt tagttcagcg ttttcaacgt tgttttctgt ttatgaaaaa aaaaaaaaaa
2281 aaataaaaaa aaaaaaaaaa ataaaaaaaa aaaaaaaaaa aaaaaaaaca aaaaataaaa
2341 aagttccct
//
