LOCUS NC_021581 2364 bp RNA linear VRL 13-AUG-2018
DEFINITION Rotavirus G chicken/03V0567/DEU/2003 segment 3, complete sequence.
ACCESSION NC_021581
VERSION NC_021581.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Rotavirus G chicken/03V0567/DEU/2003
ORGANISM Rotavirus G chicken/03V0567/DEU/2003
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
G.
REFERENCE 1 (bases 1 to 2364)
AUTHORS Kindler,E., Trojnar,E., Heckel,G., Otto,P.H. and Johne,R.
TITLE Analysis of rotavirus species diversity and evolution including the
newly determined full-length genome sequences of rotavirus F and G
JOURNAL Infect. Genet. Evol. 14, 58-67 (2013)
PUBMED 23237956
REFERENCE 2 (bases 1 to 2364)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2364)
AUTHORS Johne,R., Trojnar,E., Kindler,E. and Otto,P.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2012) Food Hygiene and Safety Concepts, Federal
Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JQ920006.
##Assembly-Data-START##
Assembly Method :: SeqBuilder v. 7.2.1
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2364
/organism="Rotavirus G chicken/03V0567/DEU/2003"
/mol_type="genomic RNA"
/strain="chicken/03V0567/DEU/2003"
/host="chicken"
/db_xref="taxon:994995"
/country="Germany"
/collection_date="2003"
gene 19..2337
/locus_tag="RVG_s3_gp1"
/db_xref="GeneID:16414228"
CDS 19..2337
/locus_tag="RVG_s3_gp1"
/codon_start=1
/product="VP4"
/protein_id="YP_008136232.1"
/db_xref="GeneID:16414228"
/translation="MLSYLRKEYATFGGTSDTSKSDQSEATSRSINEKEIKEREKPVK
SGDYFCYRQQQNRTIWNSDAFGFVLGENIEPKEDSGNIIYRSTLQGDLKFIYNEVCDP
KLKIKIYMESGGQLSVTIDGIQKQIDTMDVDVIFNDDGTITATQDDVKDINEDQKFII
IKLLDINSHSYTSNAILEMTYIQNVRTTRPLKITTDHLQITKCSQDNGPPPIVLRGLN
HEETFDVKFNGIENSRTIISEEMDGYWKITQETVAIKLKFGIEAKGVMGGAFKNWLVD
SYFVKKQLDYTYTRDGATVSAKTVTYVSPTGKGGIAQPSRPATDYNGQFTVLQPGDII
EVWYAEDQWQINNAIYAKNFQSDTMASGWIGPVDSSKLIYRMNYIPSLAKITNYSGKV
QYKYESGGFAQMDAVGYTGLAVIFRFRCVGDKWYNESWQSWYDRDNSRIAYIGERYTD
STGWIYRPGATYGFGAGYPLQEYTHDITLSYTVLKPSDPEFVTGGDNYQESITSDLYE
KVRDLQDQINTIKAELNVSGVTSGIFEALTNIGNLPQMFSNFVEVFSKVKVAILGMRK
KNVKPKPIEAIQIVSKVDVQKPLIQSIAKQMPEEIELGIIYNSIRNKRLRERQIHEID
KFAIATEMELPMIQRTETLKPKFKKYLRERGMLPENAHAIEFDAANNKFSVLLKEKAD
ILSYKIDKELAHEVLSEMSTSASRSIFSLNVRKQINLDNNFSSPTYADLVNKILDDGE
LLDVLGRIDKHRLENYVEEFVTRIEDMLQKIA"
misc_feature 712..>1089
/locus_tag="RVG_s3_gp1"
/note="Rotavirus VP4 membrane interaction domain; Region:
Rota_VP4_MID; pfam17477"
/db_xref="CDD:407512"
ORIGIN
1 ggcaaatata agctcactat gttatcctat ctgaggaaag agtatgcgac atttggagga
61 acgtcggata cctctaaatc agatcaatct gaagcaacgt caagatctat taatgagaaa
121 gaaattaaag agagagaaaa accagtaaaa tcaggtgatt acttctgcta cagacaacaa
181 cagaatagaa caatatggaa ttcagacgcg ttcggatttg tacttggaga aaatattgaa
241 ccaaaagaag acagtggaaa tataatatat agatcgactc ttcaaggtga tttaaaattc
301 atatataatg aagtgtgtga tccgaaacta aaaataaaaa tttatatgga atcgggtgga
361 caattgagcg taacaataga tggaatacaa aaacaaattg atactatgga tgttgatgtc
421 atttttaatg atgatggaac gattacagca acgcaagatg atgtaaaaga cataaatgaa
481 gatcaaaaat ttattataat aaaattgtta gatattaata gtcattcata tacatcaaat
541 gcaatattag aaatgacata tattcagaac gttcgtacaa caagaccatt aaaaataaca
601 acagatcatt tacaaataac taaatgttca caggacaatg gtccaccacc aatagtactg
661 cgaggattaa atcatgaaga aacattcgat gtcaagttca atggtattga aaatagcagg
721 acgataatat cagaagaaat ggatggctat tggaaaataa cacaggaaac tgtagcgatt
781 aaattaaagt ttggaataga agcaaaaggt gtaatgggag gtgcatttaa aaattggtta
841 gtcgattctt attttgtgaa aaaacaatta gattatactt acacgcgtga tggtgccacg
901 gtatcagcaa aaacggtaac atacgtcagc ccgacaggaa agggcggcat agctcaacca
961 tcaagaccag caacggatta taatggacag tttactgttc tacaacctgg cgatattata
1021 gaagtgtggt atgcagaaga tcagtggcag ataaataatg ctatctacgc aaaaaatttc
1081 caaagcgata cgatggcgtc gggatggata ggacctgttg actcaagtaa actaatatac
1141 agaatgaatt atataccatc attagcgaaa ataacaaact actcaggaaa agtacagtat
1201 aaatatgaat caggtggatt tgcacaaatg gatgctgtag gatatacggg tttagctgta
1261 atttttagat ttagatgtgt aggtgataaa tggtataatg aatcatggca atcatggtat
1321 gatagagata attctaggat tgcatatata ggtgaacgtt atacagattc aactggatgg
1381 atatataggc ctggagcaac ttatggattt ggagcaggtt atccattaca ggaatacact
1441 catgatataa cactttccta tactgtgtta aaaccatctg atccagagtt tgttacaggg
1501 ggtgataact atcaagaatc aataacgtca gatttgtatg agaaagtaag agatttacaa
1561 gatcaaataa atactataaa agcagaatta aacgtttcag gagtgacatc tggcattttc
1621 gaagcgctaa caaatatagg gaacttgccg cagatgttca gtaactttgt agaggtattc
1681 tcaaaagtaa aagtagctat actaggaatg agaaagaaga acgtcaaacc aaagccaatt
1741 gaggcaatac aaatagtgag taaagtcgat gtacaaaaac cactcataca gtcaatagcc
1801 aaacaaatgc cagaagaaat tgaattggga attatatata attctattag aaacaaaagg
1861 ctaagagaaa gacaaataca tgagatagat aaatttgcaa tagcaacaga aatggaatta
1921 ccaatgattc aacgaactga aacactaaaa ccaaaattta aaaaatattt aagagaaagg
1981 ggtatgctgc cggaaaacgc acatgcaata gaatttgatg ctgctaataa taagtttagt
2041 gttttgctta aagagaaagc tgatatattg tcatacaaga tagataaaga attagcccat
2101 gaagtgttgt cggaaatgtc aacttcagct tctcgttcta tattctcact gaacgttaga
2161 aagcagataa atctagacaa taatttctct agtcctacat acgcagattt ggtaaataag
2221 attctagacg atggtgaact actggatgta ctgggtagaa ttgataaaca cagattagag
2281 aattacgtcg aagaattcgt tactagaata gaagatatgt tgcaaaagat tgcataacat
2341 cgtgaagcga aaataaaaaa accc
//
