LOCUS NC_021590 3526 bp RNA linear VRL 13-AUG-2018
DEFINITION Rotavirus G chicken/03V0567/DEU/2003 segment 1, complete sequence.
ACCESSION NC_021590
VERSION NC_021590.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Rotavirus G chicken/03V0567/DEU/2003
ORGANISM Rotavirus G chicken/03V0567/DEU/2003
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
G.
REFERENCE 1 (bases 1 to 3526)
AUTHORS Ogden,K.M., Johne,R. and Patton,J.T.
TITLE Rotavirus RNA polymerases resolve into two phylogenetically
distinct classes that differ in their mechanism of template
recognition
JOURNAL Virology 431 (1-2), 50-57 (2012)
PUBMED 22687427
REFERENCE 2 (bases 1 to 3526)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3526)
AUTHORS Johne,R. and Patton,J.T.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2011) Food Hygiene and Safety Concepts, Federal
Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JN596592.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3526
/organism="Rotavirus G chicken/03V0567/DEU/2003"
/mol_type="genomic RNA"
/strain="chicken/03V0567/DEU/2003"
/host="chicken"
/db_xref="taxon:994995"
/country="Germany"
/collection_date="2003"
gene 15..3497
/locus_tag="RVG_s1_gp1"
/db_xref="GeneID:16414238"
CDS 15..3497
/locus_tag="RVG_s1_gp1"
/codon_start=1
/product="VP1"
/protein_id="YP_008136242.1"
/db_xref="GeneID:16414238"
/translation="MDQFLEWLSRSMVRDLSYTSLVYTNPRVSRIILEKDGKENIWQT
RETLTETPKQAIQYIQTIIGSNDTVEKKVEKLLRIRYHAVYVEDKSDKRDLVNKLLSI
TIKQLGNEDLDETNINLIVNDAKKWRVKNASKLRPYHFNIPIKEFIRDNEFEIVDTGD
RRWKSDTLQGLIPHYYHRTHTLVSSVLYAIQSRIDTYDDDRKKALKWMLKKIQSKMIE
GYLELERNRKWSMTIKELKEANFRMYNAKIIHAACAMISILHSKRIIPEFLCQILAAF
EEIPANAAKVLSSPMTLYIGICQLNTKKVVSTGNANESAQTDQPNIQRVDDSQLEEWK
KSIEEDPLPNSLMLRLMSRNLKTDVDTFKTIFNCFSATFHVGHRIDNSQDAIQDQVTV
EYTTKVNREMYDMYYYTLKNMLKDEIKNYMLEMKKQMNSDVTVPSLASLANTSNGKTI
EVEFVGRKIKTTKKMLHLDNDLFTQSNYTEIEKIIRQGIPMGTRNVPARQTRGIFILP
WQVAAVQHTLAETMYKRAKKGAYRGAFAEAYTAKAASLTYGVLAQDTSTAEKIILYTD
VSQWDASQHNTEPYRSAWINAIDEAREELAMPRSLEPKVLEMNVLDKMKEIQKALLNS
DLIIESPGSQREPLKIRYHGVASGEKTTKIGNSFANVALINTVLNKVAERIPDIRVTH
MRVDGDDNVVTMYTSCKIEELQKEIKDAYTQMNARVKALASWTGLEMAKRFIICGKIF
ERGAISIFTAERPYGTDVSIQQMTGASLYSAAVNAYRGFGETYRKFMEDVLIPPSAST
KITARLRVLLSPITLHSIGPLGYEITPGGLGGRMRMHFADKINMQLFKQLTNSVSISI
TPDEIKEYKGTPQFKKRTEIMIDALRNNVMKQAKILEDILVDKESQKTLGVPNVQTSK
NRQQLEEAVRILSKPENKLENVDQFYPEEVFNLVTASSNRAQPSYVSIDRLYEHESEP
VRKLQMQLGVRIADTKPLTKPVNQLYEIVSKIAPMNISPTDILTNARKYDLKTLNGKR
AFLSDLGLQGAQLKQYLGSKLLFRDLLLAKYDKLYEAPGFGATQLTTIPLNLESAERI
FNVAFRLPSNYYEILMLMLLYEYVNYIFDGGQPCVWKLKDMEANENVKLSAQIMKMID
NIKLDEVLFSDYIY"
misc_feature <1146..2234
/locus_tag="RVG_s1_gp1"
/note="Reverse transcriptase (RT, RNA-dependent DNA
polymerase)_like family. An RT gene is usually indicative
of a mobile element such as a retrotransposon or
retrovirus. RTs occur in a variety of mobile elements,
including retrotransposons, retroviruses, group...;
Region: RT_like; cl02808"
/db_xref="CDD:445932"
ORIGIN
1 ggcatatatt gaggatggac cagttcttgg aatggctatc taggagcatg gttcgtgatc
61 tctcttatac atcactagta tatacaaatc caagagttag cagaataata ttggagaaag
121 atggcaagga aaatatatgg caaactagag aaactttaac tgaaactcca aaacaagcaa
181 ttcaatacat tcagacgata ataggttcaa atgatacagt agaaaagaaa gtcgaaaaac
241 tactacgtat acgctatcat gcggtgtatg tagaagataa atcagataaa cgtgatctag
301 tcaataaatt actatcaata acaattaaac agttgggaaa tgaagattta gatgaaacaa
361 atataaattt aatagtaaac gatgcaaaaa aatggagagt aaagaacgct tcaaagttaa
421 gaccatatca ttttaacata ccaatcaaag aatttattag agataatgaa tttgagatag
481 ttgacacagg agatagacgt tggaaatcgg atacactgca ggggttgata ccacattact
541 atcatagaac acatacatta gtatcatcgg tgttatacgc aatacagtca agaatagaca
601 catatgatga tgataggaag aaagctttaa aatggatgtt gaaaaaaata caatcgaaaa
661 tgattgaagg atatttagaa ttagaaagaa atagaaaatg gtcaatgacg attaaagaac
721 taaaagaggc taattttaga atgtataatg ctaaaataat acatgctgca tgcgcaatga
781 tatcaatatt acactcaaaa agaataattc cagaatttct atgtcaaata ttagctgcat
841 ttgaagagat accagcgaat gctgcaaaag ttttatcgtc gccaatgaca ttatatattg
901 gaatatgtca gttaaatact aaaaaagttg tatctacagg aaatgcaaat gagtctgcac
961 agacagatca gccaaatata caaagagtcg atgattctca acttgaagag tggaagaaat
1021 caattgaaga agatccacta ccaaattcat taatgttaag gctgatgtca agaaatttaa
1081 aaacagacgt ggacacgttc aaaacgatat ttaactgttt ttcagccaca tttcatgtgg
1141 gtcacagaat agataattca caggacgcaa ttcaagatca agtaacagta gaatatacaa
1201 caaaggtgaa tagagaaatg tatgacatgt actattatac actaaaaaat atgttaaaag
1261 atgaaataaa gaattatatg ttggaaatga aaaagcaaat gaattctgac gttacagtac
1321 cgtcattagc gagtctagca aatacatcaa acggaaaaac gattgaagtc gagtttgttg
1381 gaagaaagat taaaacaacg aagaaaatgc ttcatcttga taacgactta tttactcagt
1441 ctaattacac tgaaatagaa aaaataataa gacaaggaat accaatggga actagaaatg
1501 ttccagcaag acagacaaga ggtatattta tattaccgtg gcaagttgct gcagttcaac
1561 atactttagc agaaactatg tataaaagag cgaagaaagg tgcatataga ggagcgtttg
1621 cggaagcgta taccgctaaa gccgcatctt taacatacgg tgtattagct caagacacat
1681 caacagcaga aaagattata ttatacacgg acgtttcaca gtgggatgcg tcgcaacata
1741 atacagaacc atacagatcc gcatggataa acgcaattga tgaagcgaga gaagaattgg
1801 ccatgccgag gtcactggaa ccaaaagtgc tggagatgaa tgtattagat aaaatgaaag
1861 aaatccaaaa ggcgttactg aattcagatt taataattga atcaccagga tcgcaacgcg
1921 agccattaaa aattagatat catggagtcg catcaggtga aaagacaact aagataggca
1981 attctttcgc aaacgtggca ttgattaata cggtattaaa taaagttgca gaaagaatcc
2041 cagacatcag agtaacacat atgcgggttg atggagatga taatgtagta acaatgtaca
2101 catcatgtaa aatagaggaa cttcagaaag aaatcaagga tgcgtacaca caaatgaatg
2161 cacgcgtaaa ggctctagca tcatggacgg ggttagaaat ggctaaaaga ttcataatat
2221 gtggaaaaat ctttgagaga ggagcaatat caatatttac tgctgagagg ccatacggca
2281 cagatgtttc aatacagcaa atgacaggtg cgtcattata ttcagcagcg gtgaatgctt
2341 atagaggatt tggtgagaca tataggaaat ttatggagga tgtcctaata ccaccttcag
2401 cctcaactaa aataacagca agattaagag tacttttatc accgataacg ttacattcga
2461 taggaccatt gggatatgag ataacaccag gaggactagg aggccgtatg aggatgcatt
2521 ttgctgataa gatcaatatg caattattta aacaactgac gaactcagtg tcaatatcca
2581 ttacacccga cgaaataaaa gaatacaagg gaacgccaca atttaagaag agaacagaga
2641 taatgatcga cgcacttaga aataatgtaa tgaaacaagc taaaattctt gaagatattc
2701 tggtggacaa agaaagtcaa aagacgcttg gtgtgcctaa tgttcaaacg tcaaagaatc
2761 gccaacagct tgaggaagca gtaagaatac tatcgaaacc tgaaaataag ttggaaaatg
2821 tagaccaatt ctatcctgaa gaagtcttca atttagtcac agcgtcttca aatagagctc
2881 aaccaagtta tgtgtcaatt gatagattat atgaacatga gtcagagcca gtgaggaaat
2941 tacagatgca gttaggggtg cgaatagctg atacgaaacc attaacgaaa ccggttaatc
3001 aattgtacga gatagtatca aaaatcgctc caatgaatat ttcaccaaca gacattttga
3061 cgaatgcaag gaaatatgac ctaaaaacat taaacggaaa gagggctttt ttatcagatc
3121 taggactaca aggcgctcaa ttaaaacagt atttaggatc aaaactatta tttagagatt
3181 tactactagc caaatatgac aaattatacg aagctccagg tttcggggcc actcaattaa
3241 ctacaattcc attgaattta gaatctgcgg aaagaatatt caacgtcgct tttagactac
3301 catctaacta ttatgaaatt ttaatgttaa tgttgttata tgagtacgta aattacatat
3361 ttgacggagg acaaccatgt gtgtggaagt taaaagatat ggaagcaaat gaaaatgtga
3421 aactctcagc acaaataatg aagatgatag acaatattaa acttgatgaa gtactgtttt
3481 cagattacat atactagtgt gagatcgtca aactaaataa agaccc
//
