LOCUS       NC_021625               3296 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus F chicken/03V0568/DEU/2003 segment 1, complete sequence.
ACCESSION   NC_021625
VERSION     NC_021625.1
DBLINK      Project: 210412
            BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus F chicken/03V0568/DEU/2003
  ORGANISM  Rotavirus F chicken/03V0568/DEU/2003
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            F.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ogden,K.M., Johne,R. and Patton,J.T.
  TITLE     Rotavirus RNA polymerases resolve into two phylogenetically
            distinct classes that differ in their mechanism of template
            recognition
  JOURNAL   Virology 431 (1-2), 50-57 (2012)
   PUBMED   22687427
REFERENCE   2  (bases 1 to 3296)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3296)
  AUTHORS   Johne,R. and Patton,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2011) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to JN596591.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Rotavirus F chicken/03V0568/DEU/2003"
                     /mol_type="genomic RNA"
                     /strain="chicken/03V0568/DEU/2003"
                     /host="chicken"
                     /db_xref="taxon:994994"
                     /segment="1"
                     /country="Germany"
                     /collection_date="2003"
     gene            19..3279
                     /locus_tag="M908_s1gp1"
                     /db_xref="GeneID:16028488"
     CDS             19..3279
                     /locus_tag="M908_s1gp1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="YP_008145313.1"
                     /db_xref="GeneID:16028488"
                     /translation="MGTYDALLEEYIHFLYSDDSLSVIPIYYTSNVDIHQELSKYHTE
                     LIEYNKIKARTKKHDFNKLESIHAKYNESISKSRRLSIVVYAYGKHDAVERKIVKYAT
                     KKPLIADLTANELDYENNKLTKDLYDEKSYTDYLMDPAISTSLTSNLNACMFTIETET
                     NEKQRKRYYELFTIVASTLHHYGIPRHDSKYRYTYEQMRDKPYYIVPWANSAIEMLMS
                     VNNHDDFVIARELITYSFSNRSTLAKIVSSPMSIMTALLDINGTFITDESLQLQYSSK
                     MIKALVTDEAKKELEEMLQKMIDLGLVDIPNILLSWIENPRLDTFHRVANVYSWSFHV
                     GYRKQLMQDAVQDQLSVEYSENVDKTMYDEYYNYIKEDYIRMLKDDVIKSTTILKQHE
                     LAGLLSMSSASNGKKMEIKFGSKKLFTTRKNMHVMSDVSSGNYNSSIVPPVDATSPIP
                     LGRRDVPGRRTRVIFILPYEYFLAQHAIVELLLKQAKHTREFSEFYSSANQLLSYGDT
                     MRELNPSTIIIYTDVSQWDGSQHNTQPFRKAIMAAMQDLQAYTTDQNVERALNKYYET
                     QRQLMNSYVTIDDKIIQYGAVASGEKQTKIANSIANLALIKTVLNKLSAKYTFNIKLI
                     RVDGDDNYTVIESRSQVTQELLSNLSKDIKDTYALMNVKVKALVSTTGLEMAKRYIAG
                     GRIYFRAGINILNNEKRNQQTAWDQAAILYASYTVNKLRGFITNRTFILTKIMQMTSV
                     KISGVLRIFPASDVLTLNSTYKVFDEVDYAVNYKVDADSLMLQKLLIKVSQSRSKVAD
                     EISKSHIFSNYVKYISTMLLKIPNKTIEQGLAKTEKAKLNSYPPISLEKRKTQLDTLI
                     KTLQYPIIYVGGKTTLNDVVSVVDQYVEYKSIDPEKKYRNYSPMLPTDISEVITVIGS
                     RLSSYEDHAGKSAIAKLISTYSVYRPSIEELYAIITKRENEIKLYMLSLSVPLQDVDA
                     YIASQTYKRDKYLILQSYVYDLLSINYGAYQLFDFESEFFSKYITYVAMSKVPSAEFL
                     VGTYVKLKIINRYLTERKWYSANITIPKHEYMKINKLTWEISSVRSPYTSANFFQE"
     misc_feature    361..2091
                     /locus_tag="M908_s1gp1"
                     /note="Reverse transcriptase (RT, RNA-dependent DNA
                     polymerase)_like family. An RT gene is usually indicative
                     of a mobile element such as a retrotransposon or
                     retrovirus. RTs occur in a variety of mobile elements,
                     including retrotransposons, retroviruses, group...;
                     Region: RT_like; cl02808"
                     /db_xref="CDD:445932"
     misc_feature    order(1582..1599,1783..1788,1897..1899,1903..1908)
                     /locus_tag="M908_s1gp1"
                     /note="active site"
                     /db_xref="CDD:238185"
     misc_feature    order(1582..1599,1783..1785,1903..1905)
                     /locus_tag="M908_s1gp1"
                     /note="NTP binding site [chemical binding]; other site"
                     /db_xref="CDD:238185"
     misc_feature    1786..1788
                     /locus_tag="M908_s1gp1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238185"
     misc_feature    2350..3276
                     /locus_tag="M908_s1gp1"
                     /note="Rotavirus VP1 C-terminal domain; Region:
                     Rotavirus_VP1; pfam12289"
                     /db_xref="CDD:403490"
ORIGIN      
        1 ggcaattaat tgcgtacgat ggggacgtat gatgctttac tcgaggaata tatacatttt
       61 ttgtattctg atgattcttt atcagttata ccaatctatt atacttcaaa cgtagatata
      121 catcaagaac tatctaagta tcacactgaa ctgattgagt ataataaaat caaagctaga
      181 actaaaaaac atgatttcaa taaattagag tctatacatg ctaaatacaa tgaatcaatt
      241 agtaagtcaa gaagattatc tatagttgtt tatgcatatg gtaaacatga tgctgtagaa
      301 agaaaaatag ttaagtatgc tactaagaaa ccgttaattg ctgatttaac tgcgaatgaa
      361 ttagattatg aaaataataa attgacaaaa gacctttacg acgaaaaaag ctatacagat
      421 tacttaatgg atcctgcaat atctacatct ttaacgtcaa atttaaatgc gtgtatgttc
      481 accatagaaa cagaaactaa cgagaaacag cgaaagaggt actatgaatt atttacaata
      541 gtggcttcaa ctttacatca ttatgggata ccacgtcatg actcaaaata tagatatact
      601 tatgaacaaa tgcgagacaa gccatattat attgttccgt gggctaactc agctatagaa
      661 atgttaatgt cagtaaataa tcatgatgat tttgtaatag cacgagaatt aattacttac
      721 tctttctcaa atagatcaac attagcgaaa atagtgtcat caccaatgtc aattatgact
      781 gcattactag acataaatgg tacttttatc actgatgagt cactacagtt acaatattca
      841 tcaaaaatga ttaaagcgct tgttacagat gaagcaaaaa aagaactcga agaaatgtta
      901 caaaaaatga ttgacttagg attagttgat attcctaata tattgttatc atggattgag
      961 aatccgaggc ttgatacatt ccacagagtt gcaaatgtat attcatggtc gtttcatgta
     1021 ggatatagga agcagttaat gcaggatgct gtgcaagatc agttgtcagt tgaatactca
     1081 gagaatgttg ataaaactat gtatgatgag tactataatt acataaagga agattacatc
     1141 cgtatgctta aagatgacgt tattaaatca acgacgattc ttaagcagca tgaactagct
     1201 ggccttttat ctatgtcgtc agcttcgaat ggaaagaaaa tggaaataaa atttggaagt
     1261 aaaaaattgt ttactacaag gaaaaatatg catgttatgt ctgacgtatc ttctggaaat
     1321 tataattcat caatagttcc gccagttgat gcaactagcc caataccgtt aggtagaaga
     1381 gatgtaccag gtagaagaac acgcgtaatt tttatacttc cgtatgaata ttttttagca
     1441 caacatgcca tagtagagtt gttactaaag caagcaaaac atactagaga attttccgaa
     1501 ttttattcgt cagcaaatca attactgtcc tacggtgata caatgagaga attaaatcct
     1561 tcaactatta ttatttacac tgatgtgtca caatgggacg gctcgcagca caatactcaa
     1621 ccattcagga aagcgattat ggcagctatg caagatttac aagcatatac tactgatcaa
     1681 aatgttgaac gagcgttaaa taaatattat gaaacgcaga gacagttgat gaattcatat
     1741 gtcacaattg atgataaaat tattcaatat ggcgctgtag cgtcaggtga aaagcagact
     1801 aaaatagcta attctattgc aaatttagct ctaataaaga ctgtactaaa taaattatct
     1861 gcaaaataca catttaatat taagttaata agagttgatg gtgatgacaa ttatactgta
     1921 attgaatcac gctctcaagt aacccaagag ttattatcaa atttgtcaaa ggacattaag
     1981 gacacttatg cacttatgaa cgttaaagtt aaagctttag tatcaactac cggacttgaa
     2041 atggcaaaaa ggtacatcgc gggaggacgt atttatttta gagctggtat taacatttta
     2101 aataatgaga agagaaatca acaaactgct tgggatcagg cagccatttt atacgcatca
     2161 tatacagtta ataaattaag aggatttata accaatagaa cattcatact cacaaaaata
     2221 atgcagatga catcagttaa gatatcagga gtattgcgaa tctttccagc tagtgatgtt
     2281 ttaacattaa actcaactta caaagtattt gatgaagttg actacgctgt taattataaa
     2341 gttgatgctg attcattaat gctgcagaag ctattaatca aagtctctca gtcaagatca
     2401 aaggttgctg atgagatttc caaatcgcat attttttcaa attacgtaaa atatatttca
     2461 actatgttat taaaaatacc aaataaaaca attgaacaag gtttagctaa gactgagaag
     2521 gcgaaattaa attcatatcc accgatatca ttagagaaga gaaaaacaca actcgataca
     2581 ctaattaaaa cactgcaata tccgattatt tatgtaggcg ggaaaacaac actaaacgat
     2641 gttgtctcag tcgttgacca atatgtagaa tataagagta ttgatccaga gaagaagtat
     2701 agaaattact ctccaatgtt gccaactgat ataagtgaag ttattacagt aattggttca
     2761 cgactatcat cttatgaaga ccatgctggt aaatccgcta tagcaaaatt aatttctact
     2821 tattcagtct acaggccatc aattgaagaa ctatatgcta taattacgaa aagagagaat
     2881 gaaattaagc tctacatgtt atcactttct gtgccattac aggatgttga tgcttatata
     2941 gcatctcaaa cgtataaaag agataaatat cttattttgc agtcatatgt ttatgattta
     3001 ttatcaataa attatggtgc ttatcaatta tttgattttg aatcagaatt ttttagtaaa
     3061 tatataacat atgtagctat gtcgaaagtt ccgagtgcag aatttctagt agggacgtac
     3121 gtaaaattga aaattattaa tagatacctc acagagcgaa agtggtacag tgctaatatt
     3181 acaataccta aacacgaata tatgaaaata aataaattaa cgtgggagat ttcttcagtt
     3241 cgatcaccat acacatctgc gaatttcttc caagagtaag ctgcaataat gtgacc
//