LOCUS       NC_021626               2769 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus F chicken/03V0568/DEU/2003 segment 2, complete sequence.
ACCESSION   NC_021626
VERSION     NC_021626.1
DBLINK      Project: 210412
            BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus F chicken/03V0568/DEU/2003
  ORGANISM  Rotavirus F chicken/03V0568/DEU/2003
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            F.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Kindler,E., Trojnar,E., Heckel,G., Otto,P.H. and Johne,R.
  TITLE     Analysis of rotavirus species diversity and evolution including the
            newly determined full-length genome sequences of rotavirus F and G
  JOURNAL   Infect. Genet. Evol. 14, 58-67 (2013)
   PUBMED   23237956
REFERENCE   2  (bases 1 to 2769)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2769)
  AUTHORS   Johne,R., Trojnar,E., Kindler,E. and Otto,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2012) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to JQ919995.
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqBuilder v. 7.2.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Rotavirus F chicken/03V0568/DEU/2003"
                     /mol_type="genomic RNA"
                     /strain="chicken/03V0568/DEU/2003"
                     /host="chicken"
                     /db_xref="taxon:994994"
                     /segment="2"
                     /country="Germany"
                     /collection_date="2003"
     gene            17..2731
                     /locus_tag="M908_s2gp1"
                     /db_xref="GeneID:16028490"
     CDS             17..2731
                     /locus_tag="M908_s2gp1"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="YP_008145314.1"
                     /db_xref="GeneID:16028490"
                     /translation="MSSNKAKQRLEELKNKREASLKKAINEGAEAVKKLVDQQNDENS
                     VQSEQTLSQSDTKTKEDKKEKENSQIQQSDEVKSLEDVEKAAKEKRDGTRHLIEVLKT
                     KEDSEKEIQKEILQKAIPTYTPNDEAVKKLSEIKIEENAEIKQLFRLFEPEVVPIYAN
                     DGRKTLITAWYWKLKKDDIPTGDYTVREYFLSLYTHVIDTMPPYIMLRSMAVDNKHSR
                     EAGKVVDAETASILEKLFADEQTDAMTRRYIAEMRHRVNAEANIVRYQAVLHPVDYEF
                     NQYFLEHQILRPLTTREIFQMIPTRMRNDVNYIFTIDNSFLETARYVPYNLLQDRLNL
                     HEGLQSIWETLTLTNYVHARTAVPDLVDLVDTETQIKEMSQMLQLEAMTIQSESQFIT
                     GINSDAANEFFKTVIAACLSQRTLRMEFTQANYMSLLSGMFVLALVPNELILRESLNS
                     LQVAIINTILCPAFDIPAMQYNYLEIQTPFELILPRIVSRQVRDYLHHVNNNHFLYNV
                     VDGVRNASLQNIIRSGAIVQNVAAALLNIAGQPFRAYNQEYKRSIQRAITILTRRAPQ
                     IEDSFRMLIYNYEVIQRFIVMNQQYAQTINTELVNMTAATSYFMLMSNRAVYPDASVL
                     LQYYKVNIRFLHNYNEAIDDTVATLLVSHRLNLYQKKILSLVTEFMRKLKIFDAPKIP
                     PDQMYLLRNRMRQLPVEQRRADVYNIMETHRTQIERASKRIAQGVVLMQQEAPLQHDP
                     IVGYTNVTRNLDGYRTISLEDLQMRGDFQPLTDVLLANQPIALQGAITYKTETDPFAV
                     LAKSDVAVFAPIIKERNLNALNPISYEINSDSKGFYIVHNNSWVPTSNTKLFKQPPRK
                     FVLSDSTFFLESGLFYTIFTDPLSFISHTSVEPVNAVAFDGHRIVRTL"
     misc_feature    62..2728
                     /locus_tag="M908_s2gp1"
                     /note="Rotavirus VP2 protein; Region: Rota_VP2; pfam05087"
                     /db_xref="CDD:398657"
ORIGIN      
        1 ggctattatt ggcaggatgt ccagtaataa ggcaaaacaa cgtttagagg aattaaagaa
       61 taaaagagaa gcgtctctta aaaaagcaat aaatgaaggt gctgaagcag tgaaaaagtt
      121 agtagatcaa cagaatgacg agaattcagt ccaatctgaa caaacattaa gtcagtcaga
      181 cactaaaaca aaagaagata aaaaagagaa agagaatagt cagatacagc aatcagacga
      241 agtaaaatca ttagaagatg tggaaaaagc agcgaaagag aaaagagatg ggactagaca
      301 tcttatagaa gtccttaaaa ctaaagaaga tagtgaaaaa gaaatacaga aagaaatatt
      361 acagaaggca ataccaactt atacaccaaa tgatgaggca gttaaaaaat tgtctgagat
      421 taaaattgaa gagaatgcgg aaattaaaca attatttaga ctatttgagc cagaagttgt
      481 tccaatttat gcaaacgatg gtagaaagac tttaattact gcatggtatt ggaagcttaa
      541 aaaagatgat ataccaactg gagattacac agttagagaa tactttctat ctctatatac
      601 tcacgtcatt gatacaatgc caccatatat aatgctgaga agtatggctg tagacaataa
      661 gcattcacgt gaagcaggta aagtagtaga tgcggaaact gcctcaattc ttgaaaaatt
      721 atttgcagat gaacaaacag atgcaatgac aagaagatat attgcagaaa tgagacatag
      781 agttaacgct gaagctaata tagttagata tcaagcagtg ctgcatccag ttgactatga
      841 atttaatcaa tatttcttgg agcatcagat attaagacca ctaacaacac gtgagatatt
      901 tcagatgata ccaacacgta tgagaaatga tgttaattat atatttacta tcgataattc
      961 ctttcttgaa acagcaagat atgttcctta taatctgttg caagatagat taaatctaca
     1021 tgaaggtcta cagtctatat gggaaacatt aacgttaact aattatgtgc atgccagaac
     1081 tgcagtgcct gatctagtag atcttgtaga cacagaaaca caaattaaag aaatgtcgca
     1141 aatgttgcaa ttagaagcga tgacaataca gtccgaatca caatttataa caggtattaa
     1201 ttctgacgcc gcaaatgaat tctttaaaac tgttatagct gcttgtttgt cacagcgcac
     1261 tttaagaatg gaatttactc aagcgaatta tatgtcatta ttgtctggaa tgtttgtatt
     1321 agctctcgtt ccgaatgaac ttattcttcg tgaatcactg aattctctgc aagtagcgat
     1381 aataaataca attttatgtc cagcttttga cattccagct atgcagtata attatttaga
     1441 aatacagact ccatttgagc tcattttacc acgcatagtt tcacgacaag tcagagatta
     1501 tttacaccat gtcaacaata accacttcct atataatgta gtagatggag taagaaatgc
     1561 ctctttacaa aatattatta gatcaggagc gatagtacaa aatgtagccg ctgctttgtt
     1621 aaatatagca ggccaaccat ttcgcgcgta taatcaggag tataaaagat caatacaaag
     1681 agcaattact atattaacga gacgtgcgcc acagattgaa gattcattta ggatgttgat
     1741 ttacaattat gaagtgattc aaagattcat agtaatgaat cagcaatatg cacaaactat
     1801 aaacaccgaa ttagtgaata tgacagcagc tacgtcgtat ttcatgttaa tgtcaaatag
     1861 agctgtatat ccagatgcat ctgttctact acagtattat aaagtgaaca tcagattttt
     1921 gcataattat aacgaggcaa ttgatgatac cgtagctacc ctactcgtat ctcataggtt
     1981 aaatctctat cagaagaaaa tactgtcact ggtaactgaa tttatgcgta aattaaaaat
     2041 atttgatgct ccaaagattc caccagatca gatgtattta ctaaggaata ggatgaggca
     2101 attaccagtt gaacagagaa gggctgatgt atacaatata atggagacac atagaacaca
     2161 gattgaacgc gcttcaaaac gaattgcaca gggagttgta ttaatgcaac aagaagcacc
     2221 attacaacat gacccaattg tcggttatac taatgtaaca agaaatttag atggttatag
     2281 aaccatctca cttgaagatt tgcagatgcg tggagatttt caaccattaa cggacgtttt
     2341 gttagctaac caaccaattg ctttacaagg tgcaataacg tacaaaactg aaactgatcc
     2401 atttgctgta ttagctaaat ctgacgttgc agtatttgcg ccaataataa aagagcggaa
     2461 tctaaatgct ttaaatccaa tttcatatga aataaattca gactcaaaag gcttctatat
     2521 agttcataat aattcatggg ttccgacatc aaatactaaa ttattcaaac aaccgccacg
     2581 caaatttgtt ctatctgatt caacattctt tttagagtct ggactgtttt acactatatt
     2641 taccgatcca ttgtcattta tatcacacac ttcagttgaa ccggttaatg ctgtagcttt
     2701 tgatggtcat agaatcgtca gaacgctcta aacggcctta gctggaggag tattatctcc
     2761 attgtgacc
//