LOCUS       NC_021630               2174 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus F chicken/03V0568/DEU/2003 segment 4, complete sequence.
ACCESSION   NC_021630
VERSION     NC_021630.1
DBLINK      Project: 210412
            BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus F chicken/03V0568/DEU/2003
  ORGANISM  Rotavirus F chicken/03V0568/DEU/2003
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            F.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Kindler,E., Trojnar,E., Heckel,G., Otto,P.H. and Johne,R.
  TITLE     Analysis of rotavirus species diversity and evolution including the
            newly determined full-length genome sequences of rotavirus F and G
  JOURNAL   Infect. Genet. Evol. 14, 58-67 (2013)
   PUBMED   23237956
REFERENCE   2  (bases 1 to 2174)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2174)
  AUTHORS   Johne,R., Trojnar,E., Kindler,E. and Otto,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2012) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to JQ919996.
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqBuilder v. 7.2.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Rotavirus F chicken/03V0568/DEU/2003"
                     /mol_type="genomic RNA"
                     /strain="chicken/03V0568/DEU/2003"
                     /host="chicken"
                     /db_xref="taxon:994994"
                     /segment="4"
                     /country="Germany"
                     /collection_date="2003"
     gene            40..2124
                     /locus_tag="M908_s4gp1"
                     /db_xref="GeneID:16028498"
     CDS             40..2124
                     /locus_tag="M908_s4gp1"
                     /codon_start=1
                     /product="VP3"
                     /protein_id="YP_008145318.1"
                     /db_xref="GeneID:16028498"
                     /translation="MRMLICNKQQLRRQAANSSIYTYNTELSQYENAFLCSNVTTDIV
                     FVDTNHDQSMSNFVNILRTNGIARVDVRKSDELFDILVSSSFIFDYKSSTIYLMDYSY
                     YKEFDLATDQFWAYEELKNAGYKIEYTGYMGRERMKFIGNYFLTNIATDDDIISAYIY
                     DACIIDFKQFLFQKKLERLSHALDFNRLESRVLRHVIYSRSIYNHIVGPRNESAIALL
                     WSNMKFRHYANNLPVAINIMRQGTSKFAERINSQFDIGQYKNMMNFLTVWFRYITVYG
                     KSPDCAYIIGSSPARWLKDIPQHILEKIFTYDPKETEFSLHHFKQLFEISDVKSLSNN
                     SVVYIDIRTDGDRSYSNWEKRRNQVETESMKNMELAQMILKLKRNCIVMYKLTAMDFN
                     IPVNAYFIHFPTTNTRSEFYLLQDELSATEYVTKGNCYYAINNFTSDNVFISPKFHLT
                     KRNKGREVCALYALSNVINIKTDVLQYINQTNKGVYTLRLANDFDLSCTIKFKDGADF
                     LTLPTELRSDDNTLITSHRGALGYYNLCTTHDDKPTGNNHIYIIKNVIKPIDDTYAGH
                     YSISRRSHTVRFSETATKLAGYMFRDLVANGPDYKLSNTDINNSASGHVCNAIIYYRH
                     NYTFDLMNWLRKHAIGTYKIVGGRYEKHAVKEILNAIESAIMFTRLNNDLTGQNYAQQ
                     CKDVFNAFVEVD"
     misc_feature    85..2085
                     /locus_tag="M908_s4gp1"
                     /note="Rotavirus VP3 protein; Region: Rotavirus_VP3;
                     pfam06929"
                     /db_xref="CDD:399720"
ORIGIN      
        1 ggctattaat tgaagcctat cagcgtttca agcgttggta tgcggatgtt aatttgcaat
       61 aaacagcagt tgagacgaca agctgcgaat tcatctatat atacatataa cactgaatta
      121 tcacaatatg aaaacgcatt tttatgttca aatgttacaa ctgatattgt atttgtcgat
      181 acaaatcatg atcaatctat gtcgaatttt gttaatatct taagaacaaa tggtattgca
      241 cgtgttgatg tacgtaaatc tgatgaattg tttgatatac tagtttcatc gtcatttata
      301 tttgactata aatctagtac aatttatctt atggattact catattataa agaatttgat
      361 ttagcgacgg accagttttg ggcatatgaa gaattaaaaa atgcaggcta caaaatagaa
      421 tatacaggat acatgggtag agagagaatg aagtttatcg gtaactattt tttgacaaat
      481 atagctacag acgatgatat aatatcggca tacatatatg atgcatgtat cattgatttc
      541 aaacagtttc tattccagaa aaaattagaa cgcctatccc atgcactaga ctttaatagg
      601 cttgaatcac gagtattgag acacgtaatt tactcaagat caatctataa tcacatagtt
      661 ggtccgagaa atgaatcagc tatcgcctta ttatggtcaa atatgaaatt tagacattac
      721 gcaaataatc taccagtagc gattaatatt atgcgacagg gaacgtcaaa attcgcggaa
      781 agaattaact cacaatttga cataggacaa tataaaaata tgatgaattt cttaactgta
      841 tggttcagat atattacggt atacggaaaa tcaccagatt gtgcttatat tataggttcg
      901 tcaccagcac gttggttaaa agacattcca caacatatac tagaaaagat ttttacatat
      961 gatccgaagg agacagaatt ctcattacac cattttaagc aactattcga aataagtgat
     1021 gttaaaagtt tgtccaataa ttcggtagtt tatattgata tcagaacaga tggtgataga
     1081 tcatactcta attgggaaaa acgacgtaat caagtagaaa ctgagtcaat gaaaaatatg
     1141 gaacttgccc aaatgatcct gaaactaaaa agaaactgca ttgtaatgta taaattaact
     1201 gctatggatt tcaatattcc agtaaatgca tattttattc attttccaac aactaatact
     1261 cgttctgagt tctatttgct ccaggatgag ctgtctgcaa ctgaatatgt tacaaaaggt
     1321 aactgttatt atgctattaa taacttcact tccgacaacg tgtttatatc accaaaattt
     1381 catttaacaa agagaaataa gggtcgagaa gtgtgtgcac tatatgcgtt atcaaatgtg
     1441 attaatataa agactgacgt gttacagtac ataaatcaaa caaataaagg ggtctacaca
     1501 cttagattgg caaatgattt tgatttaagt tgtaccatta aatttaaaga tggggcagat
     1561 ttcctcacat taccaactga gttacgatca gacgataata cacttataac gtcacacaga
     1621 ggggcattag gatattacaa tttgtgcact acacacgatg ataaaccaac gggtaataat
     1681 catatttata taatcaagaa cgtgataaag ccaattgatg acacatatgc tggacattat
     1741 tcaatatcaa gaagatcgca tacagtaagg ttttcagaaa cagcaactaa gttagcaggt
     1801 tatatgtttc gtgacttagt agcaaatgga ccagactaca aactctcaaa tacggatata
     1861 aataatagtg catcaggaca tgtatgtaat gctataattt attatagaca taattacact
     1921 tttgatttga tgaattggtt acgtaaacat gcaattggta catataaaat agttggcggc
     1981 agatatgaaa aacatgctgt taaagaaatt ttaaatgcaa ttgaatctgc tataatgttc
     2041 acgaggttaa ataatgattt aacaggacaa aattatgctc agcaatgtaa agatgtattc
     2101 aacgcattcg tcgaagtgga ctaataatcc acctgttgtg cgggagtcgt gcccagccag
     2161 gctccaatca gacc
//