LOCUS NC_021631 2246 bp RNA linear VRL 13-AUG-2018
DEFINITION Rotavirus F chicken/03V0568/DEU/2003 segment 3, complete sequence.
ACCESSION NC_021631
VERSION NC_021631.1
DBLINK Project: 210412
BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Rotavirus F chicken/03V0568/DEU/2003
ORGANISM Rotavirus F chicken/03V0568/DEU/2003
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
F.
REFERENCE 1 (bases 1 to 2246)
AUTHORS Kindler,E., Trojnar,E., Heckel,G., Otto,P.H. and Johne,R.
TITLE Analysis of rotavirus species diversity and evolution including the
newly determined full-length genome sequences of rotavirus F and G
JOURNAL Infect. Genet. Evol. 14, 58-67 (2013)
PUBMED 23237956
REFERENCE 2 (bases 1 to 2246)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2246)
AUTHORS Johne,R., Trojnar,E., Kindler,E. and Otto,P.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2012) Food Hygiene and Safety Concepts, Federal
Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JQ919997.
##Assembly-Data-START##
Assembly Method :: SeqBuilder v. 7.2.1
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2246
/organism="Rotavirus F chicken/03V0568/DEU/2003"
/mol_type="genomic RNA"
/strain="chicken/03V0568/DEU/2003"
/host="chicken"
/db_xref="taxon:994994"
/segment="3"
/country="Germany"
/collection_date="2003"
gene 12..2228
/locus_tag="M908_s3gp1"
/db_xref="GeneID:16028500"
CDS 12..2228
/locus_tag="M908_s3gp1"
/codon_start=1
/product="VP4"
/protein_id="YP_008145319.1"
/db_xref="GeneID:16028500"
/translation="MASRFWVGIINDWQNVQARQQTIAQTSNKKFETYIDTSNVGTAQ
LPPSNFSNDNMSQPSEDVSSSLWYGPNKPQILTNAEYQQVKPAKLFFKFETPKQYLMW
QVDNYAAGFYKKGDNFGTEVIKDDSIIIVYDKTSNQKLFTSTIINSIVFSISEMTSNQ
LELTAYQGNMSRSIANITDQNFNLDIRQDYYSCASTLFPTLYKNEMHYVIERNAKVLS
KALTEETVVSQAGLWKEVRYAADITLRFYFQSEAIRKGGFGYQFSTSNFKPWTSVYSY
TRDNENVTAHVTVTLNGLSVYSQRGAVPTDFAIDRMECITNDTYMYIDYWDTSNLFRN
MVYVRDLKVEQSSIRIGFWPYMRSLTLPVGSITPYYPFGITPNGVINADLICEGITLS
TQFTDAASMNSLRFIFKFKNFDPPNGNITRMKVTGVPAAYMQYAQVGGNPGNPGDPFN
YNVRFSMISLIPANDEYKTPIAASVTVRQDLDIKLSQLRQEFNQVAENLAVSQAIGLA
TMPFDMLSMFSGTFDVVQNIGDFTSTLFSKFSKTTTGVQLLKYTKYTDELVDVATSTD
DVLEVATIANKAKIMKSVETMTDSLDFEDISTAVLNKAMREIGTQTDYNSIAQIAAES
IDMIPTKAYRVIDNASDTVYEVSKDANIAYKLTDLSQIQFDIDKFKKLSSESPVLSAI
IDFKTIKMMNQANGKLDRITLDNLLASNPQILKTMIAQNNPIIVRRVQELIDQCRL"
misc_feature 678..1394
/locus_tag="M908_s3gp1"
/note="Rotavirus VP4 membrane interaction domain; Region:
Rota_VP4_MID; pfam17477"
/db_xref="CDD:407512"
misc_feature 1425..2225
/locus_tag="M908_s3gp1"
/note="Rotavirus VP4 helical domain; Region: VP4_helical;
pfam17478"
/db_xref="CDD:435918"
ORIGIN
1 ggctattaaa gatggcttct cgcttttggg tcggaattat aaatgactgg caaaatgttc
61 aagcaaggca gcaaacaatt gcgcaaactt cgaacaagaa atttgaaact tatatagata
121 catctaatgt aggtacagca caattaccac cttctaattt tagtaatgat aacatgtctc
181 aaccatcgga agatgtatct agtagtcttt ggtatggacc aaacaaaccg cagattttga
241 caaatgctga ataccaacaa gtgaaaccag ctaaattgtt ctttaagttt gaaactccaa
301 aacaatattt aatgtggcaa gttgataatt acgctgcagg attttataaa aaaggcgata
361 attttggaac agaagtaata aaagatgatt caataataat tgtgtatgat aaaaccagta
421 atcagaaatt gtttactagt acaattatta attctatagt gtttagtatt tcagagatga
481 caagtaatca gctcgagctg acagcatatc aaggaaatat gtctagatcg attgctaata
541 ttaccgatca aaattttaat ttggatatta gacaagatta ctattcatgt gcttcaacac
601 tatttccaac tctatataaa aatgaaatgc attatgtaat agaaagaaat gctaaggtat
661 tatcaaaagc tttaactgaa gaaactgtcg tgtcacaagc tggattatgg aaggaagtga
721 ggtatgcagc tgatataaca ctacgtttct attttcaatc agaagctata aggaagggtg
781 gatttggtta tcaattttca acgtctaact ttaaaccctg gacgtctgta tattcatata
841 cacgtgacaa tgagaatgtt accgcacatg ttacagttac tttgaatgga ctatcagtat
901 attcacaaag aggagcagta ccaactgatt ttgcaattga tagaatggaa tgtattacaa
961 atgatacata tatgtatatt gactattggg atacttcaaa tttattcaga aacatggtat
1021 atgttagaga tcttaaagta gagcaatcat caattagaat agggttctgg ccatatatga
1081 gatcactgac attaccagta ggaagtataa ctccatatta tcctttcggt ataacaccaa
1141 atggtgtgat taatgcagat ttaatatgtg aagggataac gttatcaact caatttacag
1201 atgcagcgtc aatgaattca ttacgcttta tattcaaatt taaaaatttt gacccaccaa
1261 atggtaatat aacaagaatg aaagtgaccg gagtcccagc agcatatatg caatatgcac
1321 aagtaggagg aaatccagga aatccaggag atccatttaa ttataatgta agattttcga
1381 tgatatcatt aataccagca aatgatgaat ataaaacgcc aattgcagct tcagtcaccg
1441 tacgtcaaga tttggatatt aagttaagcc aattacgaca ggaattcaat caagtggcag
1501 aaaatttagc cgtttctcaa gcgataggtt tggcaactat gccatttgat atgctatcaa
1561 tgttttcagg tacttttgac gtagtacaaa acattggtga ttttacgtca acgctttttt
1621 caaaattttc aaaaacaact actggagttc aattacttaa atatacaaaa tatacagatg
1681 aattggtaga tgttgctaca tcgacagatg atgttttgga agtggcaaca attgcaaata
1741 aagcgaagat aatgaaatca gtagagacta tgactgattc actagatttt gaggacattt
1801 caacagctgt tttgaataaa gcaatgcgtg aaattggtac acaaacagat tataattcta
1861 tagctcagat agcagctgag tcaattgata tgataccgac taaagcttac cgagtaattg
1921 ataatgcatc agacacggtt tatgaagtaa gtaaggatgc taatatagca tataagttaa
1981 ctgatctaag tcaaattcaa ttcgatattg ataagtttaa aaagctttca tctgagtccc
2041 cagtattatc tgcaattatt gattttaaga caattaaaat gatgaatcaa gcaaatggta
2101 aattggacag aattacgtta gacaatttac ttgcatctaa tccacaaata ctcaaaacta
2161 tgattgcgca aaataatccg ataattgtgc gtagagttca agagctaatt gatcaatgta
2221 gactttgagc gagaaacagt atgacc
//
