LOCUS       NC_021635               1314 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Rotavirus F chicken/03V0568/DEU/2003 segment 6, complete sequence.
ACCESSION   NC_021635
VERSION     NC_021635.1
DBLINK      Project: 210412
            BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Rotavirus F chicken/03V0568/DEU/2003
  ORGANISM  Rotavirus F chicken/03V0568/DEU/2003
            Viruses; Riboviria; Orthornavirae; Duplornaviricota;
            Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus
            F.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Johne,R., Otto,P., Roth,B., Lohren,U., Belnap,D., Reetz,J. and
            Trojnar,E.
  TITLE     Sequence analysis of the VP6-encoding genome segment of avian group
            F and G rotaviruses
  JOURNAL   Virology 412 (2), 384-391 (2011)
   PUBMED   21329955
REFERENCE   2  (bases 1 to 1314)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1314)
  AUTHORS   Johne,R., Otto,P., Roth,B., Loehren,U., Reetz,J. and Trojnar,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2010) Food Hygiene and Safety Concepts, Federal
            Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
            Germany
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to HQ403603.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Rotavirus F chicken/03V0568/DEU/2003"
                     /mol_type="genomic RNA"
                     /strain="03V0568"
                     /host="chicken"
                     /db_xref="taxon:994994"
                     /segment="6"
                     /country="Germany"
                     /collection_date="2003"
     gene            26..1216
                     /locus_tag="M908_s6gp1"
                     /db_xref="GeneID:16028508"
     CDS             26..1216
                     /locus_tag="M908_s6gp1"
                     /codon_start=1
                     /product="VP6"
                     /protein_id="YP_008145323.1"
                     /db_xref="GeneID:16028508"
                     /translation="MEAIYSIARTIADAEEKIVVGTLFSNVQQIVMQMNEVIKVMNGS
                     QFLTGGVGNMGVTQWTFNHGQLGVAPLYVDENYREELMQTINYYKRFVHAVCETEMCL
                     ESQRGGATMQSAAMQALQTVKFKNLSYDYSENYIKQWALQKVRVRTAYSSRNPYVVPE
                     LNTITYRRSQAAMDNVAGTRVMAIGDTIKFAVFDQDFARTEPGQMWESNFEYNMPVPI
                     SDATIQVGTDASGLLNDQVLITNTYNTTWLYVPFQVPLTRFTIEFYNTGNLVYQIVAP
                     GMHCVPTFNSIIFRLRIVRPAVLSQQLQQYFPAQNPGNVHATVVISLQIKSCVTDVVL
                     ADPDSTHYARITNVRTLYGIPVGPVFPPNMAWDTIVRDYSASRQDNMQRLMTIAAIDC
                     MLSE"
     misc_feature    26..1207
                     /locus_tag="M908_s6gp1"
                     /note="Rotavirus major capsid protein VP6; Region:
                     Rota_Capsid_VP6; pfam00980"
                     /db_xref="CDD:395780"
ORIGIN      
        1 ggcttataaa agtcaatcag tcgcaatgga ggccatctat tctattgcaa gaactatagc
       61 cgatgcggag gagaaaattg tagttggtac actgttttcg aatgtgcaac aaatagtaat
      121 gcaaatgaat gaagtaatta aggtaatgaa cggatcacaa tttttgacag gtggagtcgg
      181 aaatatggga gtaacacaat ggacgttcaa ccatggacaa cttggagttg caccgcttta
      241 tgtagatgaa aattacagag aagaattgat gcagactata aattattaca aacgttttgt
      301 ccatgctgta tgtgaaactg aaatgtgtct tgaatcacag agaggtgggg ctacgatgca
      361 atcagctgct atgcaagcgc tacagacagt caaatttaaa aatttatctt atgactatag
      421 tgaaaactat ataaaacagt gggcattaca aaaggttaga gttagaacag cttactcgtc
      481 gaggaatcct tatgttgtac ctgagttgaa tactattaca tatagacgtt ctcaagcagc
      541 tatggataac gtagcaggta ctagagtaat ggcaattgga gacacaatta agtttgctgt
      601 ttttgatcag gactttgcac gtacggaacc aggccagatg tgggaatcaa attttgaata
      661 taacatgccg gtaccgatat ctgatgctac aatacaagtc ggtacagatg catctggtct
      721 actcaatgat caagtactaa ttacaaatac ttataatact acctggctat atgttccttt
      781 tcaggtgccg ctaacacgtt ttacaattga attttacaat accggcaatc tagtatatca
      841 gatagttgca ccaggtatgc attgtgttcc aacttttaac tctatcatct ttaggctacg
      901 aatagttaga ccagcggtgc tatcacaaca actacagcaa tacttccctg ctcaaaaccc
      961 aggtaatgta cacgctactg tagtgatttc gctgcaaatt aaatcttgtg tgactgatgt
     1021 tgttttagca gatccagatt ccactcatta cgccagaata acgaatgtaa gaacattgta
     1081 tggcattcca gttgggccag tgtttcctcc aaatatggcg tgggatacaa tcgttagaga
     1141 ttattcagca tctagacaag ataatatgca aaggttaatg accatcgctg cgatagattg
     1201 catgctatcc gaataattcc atattggtta ttataccata tggtttattc cgatagtatc
     1261 actgttacgt ttggccgggc aactgtgtag cggcgtaaca ggaactttat gacc
//