LOCUS NC_022798 7598 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Potato black ringspot virus isolate PRI-Ec segment RNA 1, complete
sequence.
ACCESSION NC_022798
VERSION NC_022798.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Potato black ringspot virus
ORGANISM Potato black ringspot virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
solani.
REFERENCE 1 (bases 1 to 7598)
AUTHORS Souza Richards,R., Adams,I.P., Kreuze,J.F., De Souza,J.,
Cuellar,W., Dullemans,A.M., Van Der Vlugt,R.A., Glover,R., Hany,U.,
Dickinson,M. and Boonham,N.
TITLE The complete genome sequences of two isolates of potato black
ringspot virus and their relationship to other isolates and
nepoviruses
JOURNAL Arch. Virol. 159 (4), 811-815 (2014)
PUBMED 24122155
REFERENCE 2 (bases 1 to 7598)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7598)
AUTHORS Souza Richards,R., Adams,I.P., Kreuze,J.F., De Souza,J.,
Cuellar,W., Dulleman,A.M., Van Der Vlugt,R.A.A., Glover,R.,
Hany,U., Dickinson,M. and Boonham,N.
TITLE Direct Submission
JOURNAL Submitted (25-MAR-2013) The University of Nottingham, Plant
Research International, International Potato Center and Food and
Environment Research Agency, Sand Hutton, York, Yorkshire YO41 1LZ,
UK
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KC832887.
##Assembly-Data-START##
Assembly Method :: Newbler v. 2.6
Sequencing Technology :: 454
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7598
/organism="Potato black ringspot virus"
/mol_type="genomic RNA"
/isolate="PRI-Ec"
/host="Solanum tuberosum"
/db_xref="taxon:257464"
/segment="RNA 1"
/country="United Kingdom: Scotland"
gene 108..7082
/locus_tag="V522_s1gp1"
/db_xref="GeneID:17622580"
CDS 108..7082
/locus_tag="V522_s1gp1"
/codon_start=1
/product="RNA 1 polyprotein"
/protein_id="YP_008802578.1"
/db_xref="GeneID:17622580"
/translation="MGFICPNLDCLGNKTVFSRKDLRDEGLTFSMRCPRACCGALLRK
QEDIEVVDSATTSRKSLDSAKPKCLCWHKSYGLARCPKHQGVAPVQTVSFGDEEVFTL
VTPTPVAPATKSKSAPSAPLLKKQNCDVVVAMGPPVDLEFVYPALCGKGSAPTTKAVK
KSSAEVLLEKRAAYQAKHAVPTPGPVRVVKTAATPVKVEKIQFPRGAVVYNGTNFFDA
KGNVVLSAAALKILRGVKRLRSQAVRAERRQRICKKIRLAAFAAKVPELLRRASEATS
GGFRYNDLNAPKCADSVARPRFSRKGKKTKSVQCTARSASPVQEEINWDDWIIPESER
TASPVKEEKTKQPLVPLSLGFGWWRPASGKLWTQVVHCMRAVKGTPIAVPCEKFLCAA
GADDTALSVWARISSSVVDLAAHYSFDILLENYTALEGCTMDVLQSVAVQLDSEYQEM
GPPTHHTCGLSSWARGAGKLMADFITPSLNAMKGAANAVIDRAYLLTKDVIDGIFSQL
KKLFYDSFGHLLGHLNVLLSTVDSFWQRASTWVMNILEKTHDAIKVLRDASVWSLLLI
LVGGMILLSERFLVSVGVITQPGTILGIFLATFLGIFGYTFFKKDDTLVSDLLWVFKT
AITGLFRTKPGPPGSPIIIDGDVVIPEPATSMSTCSLLGGLDIAIAAIGSVGSSILTF
KMGTLQYAAKIATCLDQLRKGKDVLKEMTCWLIETLGQLWNKVTGREATFFDEVSAIV
AVDIREWLQESQDLCLAAQTFSIGDKIVLEQCERLIADGHKLLRGMGDADRKLSASFL
STIQRKVSDLEKIHTQSVRAGYFEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLKAG
GFSEASIYTKNSCDKYWSRYRRQACVQIDDLSAGKTDPSLETQLINLVASKEVPLDMA
EVEDKGILFDSSILVTSSNTSSVPTNANINHVSAYNNRQGCIIMCRQKPEYSPLGMEL
EGTFQPFDPRNPQASVECMLQRWEKDILIPVTGWISAGAAMAEAVNKFRLHREKEMIL
QNNHLSSFRPAHPIYTECATFLSMYSRDASFVPPVDLGCKWNVPTGYLSIAAVDGRTF
GFTQFGVCEEISHILKYTEEMEAYTLEKFAPTITRTLASQSRYKLVGAFLKGMVRDED
NVMSLKSLGPKSTSTQREFFETLGIGERVYLRAVQKRINKINNEPAFNVDNLHAKLLN
SVVSSYEYVKEKGPKIFPLLMGFIVVVFACYGFVMPLLSFASGGSAVGGMVAMEQMTA
ASVISSGSSPVHHRSRAPPIQPRYARHRLAGSAPDESYAYEELMVVLYVDSTIAPVVN
AVRGPGRSIFITEHQAMAIPNNSTVVAHLSTKDVVEIHWEHSVAMKGKVKETEIVQYR
CPSIPELPARLRGYFEYDLERDLPGPFTLRASVYRMKSPGKIDLELVDWTNHDAELKT
KALVISDPFGEDRYRREYPRYISYRRSAQLHDCGAICVAQIGGQYRVVGLLISTDKYN
TGVGLLPSALHMTTCSLTYVPEEWEDAPRGLKKLGWKHVSELPHMPRKTQYELVNESI
RIPFENPKIPSVLVADDPRTIGTPVEGQDPVLKAMEKFYEPMLNFDETPVANSTEMAI
FESVCDDIVQTWYDAGADFEDVDDDVVINGDDEFDKLIMDTSEGYPYVLERSRGEKGK
TRYFEGGPGAYTLKPGTSVYRDYHTLQEEVSVEGGIPEMVCIECPKDELLVPRKVLEK
LGTRNFEILELPKNMLFRKKFLSWASFLSEMRWCLPCQVGIVVQGREWGLLLDRLSEK
NSVAYNCDYSKFDGLMSCQVLDAIGKMVNKCYANTNPNKKGRGEVPGSPPQLARHNLL
MSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVVPSPEFNRFET
FVTLAVYGDDNLIAVDPVMANAFTGEVIKRTLARKGITITDGSDKLSPTLEAKPLSQL
DFLKRSFLVSSSGQVMPALDRTCIYSSLLYLSSKGADPIPLLHQNVQNALQEMYHRQD
RAEFDTLRNFYLERCPTWRSGPNRLLDYNQCHAHWISRYTGQPNSNPAGVVDMLVDPR
HKSFLLPAGPANWSMPVADGIFVCGPKFFPNAPSFTICFNRLAAGETGIEIKPVHAAT
QGAMPTGKFVKSFRSMKKRPELELALAAKDAGSAIYFKGCAPYNDIWACAIAFCSAFG
FADKQVLLAVHDNSKPIGASSLRSYFNGNLAGDGCARRLEVHSKAGQFAAVQRLAPTM
QCKQIVYDPDFASKPTTHLRKCTDHGTDGGKALYIVQGLGVTAAKLVCTDLCDGHVVS
CSNNFDRMVKDVLSQSCF"
misc_feature 2598..2906
/locus_tag="V522_s1gp1"
/note="RNA helicase; Region: RNA_helicase; pfam00910"
/db_xref="CDD:425942"
misc_feature 5226..6191
/locus_tag="V522_s1gp1"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature 5466..5510
/locus_tag="V522_s1gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(5481..5483,5829..5837)
/locus_tag="V522_s1gp1"
/note="catalytic residues [active]"
/db_xref="CDD:438017"
misc_feature order(5694..5744,5748..5765)
/locus_tag="V522_s1gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
misc_feature order(5811..5822,5826..5855)
/locus_tag="V522_s1gp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438017"
ORIGIN
1 tcacacggtt cggaatattt gtgttgctac cccctctttc tctcttaatt gtctttgaaa
61 ctgatcaaca accccctctt tcgaattgtt ccccaatttt ttttttaatg ggctttattt
121 gccctaactt ggactgtctt ggcaacaaga cagtcttttc tcgtaaggac ctcagagatg
181 agggccttac ttttagcatg cgctgtcctc gcgcatgctg cggagctttg ctccgtaagc
241 aagaggatat cgaagttgtg gatagcgcca caacatcccg aaagagcttg gatagcgcca
301 agccaaagtg cctttgctgg cacaagtcct acgggctcgc ccggtgccct aagcaccagg
361 gcgttgcccc agttcaaacc gtctcctttg gagacgaaga ggtgttcact cttgtgacac
421 ctactcccgt ggctcctgcc acaaaatcca aatctgctcc ctctgctcct cttctcaaga
481 agcagaattg cgacgtcgtt gtcgcaatgg gtcctcctgt ggatctggag tttgtctacc
541 ccgctctgtg cgggaagggt tctgcgccta ccacaaaggc ggtcaagaag tcctcagctg
601 aggtacttct tgagaaacgt gcggcctatc aggctaagca cgctgttccc acccccggtc
661 ctgtccgggt agttaagact gctgccaccc cagttaaggt ggagaaaatc cagttccctc
721 gcggagctgt ggtttataat ggcaccaatt tttttgatgc caagggcaat gttgtcctga
781 gtgctgctgc actcaaaatc ttgagaggcg ttaaacgcct ccgttctcag gcggtccgtg
841 ctgaacgccg ccagcgtatc tgtaagaaga tacgtcttgc agcctttgct gctaaagtcc
901 cggagctttt acgccgggca tctgaagcca catctggtgg tttcagatac aatgatctga
961 acgcgccgaa gtgcgcagat tccgtggcga ggccacgttt ttcccgcaag ggaaagaaaa
1021 caaagtctgt gcaatgcaca gccaggtctg cctcccctgt tcaggaggaa attaactggg
1081 atgattggat cattccagaa tctgagagga ctgcctcccc tgtgaaggag gaaaaaacca
1141 agcagccctt ggttcccctg tctttggggt ttggctggtg gcgaccagct agcgggaaac
1201 tgtggacaca agttgtccat tgcatgcgtg ccgttaaagg cacccctatc gcagttccct
1261 gcgagaaatt tctctgcgcc gctggtgcag atgacactgc cctctctgtt tgggcaagaa
1321 tttccagcag tgttgttgac ttagcagcac actattcttt tgacatcctg ctggagaact
1381 atactgctct ggaaggctgc acgatggatg tactccaaag tgttgctgtc cagttagact
1441 cggagtacca ggaaatggga ccacccacac atcacacatg tggcctgtct tcctgggctc
1501 gcggagctgg aaagcttatg gcggatttca tcaccccgtc attgaatgct atgaaaggtg
1561 cagcgaatgc tgtcattgac cgtgcttatc tactgactaa agatgttatt gacggaatct
1621 tctctcaact gaagaaactg ttctatgaca gctttggaca tttgttaggt cacctgaacg
1681 tgctcctttc aaccgtagat tccttttggc aacgtgcctc aacgtgggta atgaatattc
1741 ttgagaaaac ccatgatgcc attaaggttt tgcgtgatgc ttccgtctgg tctttattgc
1801 ttatattagt aggcggaatg attttactct cggaacgttt tctagtgagt gtcggtgtta
1861 ttactcaacc cggcacaatt cttggcattt ttttggccac gttcctcgga atttttggat
1921 acaccttctt caaaaaggat gatactcttg tatcggattt gttgtgggtg tttaaaactg
1981 ctattactgg tttgttccga acaaagcctg gtcctccagg atctccaatc attattgatg
2041 gagatgtcgt cattccagag cccgccacct caatgtctac atgtagtttg ttaggtgggc
2101 ttgatatagc aattgctgct attggtagcg ttggatcctc aattcttaca tttaagatgg
2161 gaacgcttca gtatgcagcc aaaatcgcca catgtcttga tcaattacgg aagggcaaag
2221 atgtccttaa agagatgaca tgttggctga tagaaacctt gggccaactt tggaacaagg
2281 taacaggaag agaagccaca ttctttgatg aggtctctgc tattgttgca gttgacattc
2341 gtgaatggct tcaggagtcc caggatctgt gccttgctgc acaaaccttt tctattggtg
2401 ataagattgt tcttgaacaa tgtgaacgtc ttattgctga tggccataag ttgttgcgtg
2461 gcatggggga tgctgatagg aaactgtcgg cctcctttct gtctacaata cagcgaaagg
2521 tttcagacct ggagaagata catactcagt cggtccgagc tgggtatttt gaaggaagaa
2581 ggatggaacc attttgggtt tacatccacg gaccctccca ttgtggaaag tcattgctca
2641 tggagcccat gtctcgtgag ttactgaaag cgggaggctt ttctgaggcg tcgatataca
2701 cgaagaattc gtgtgataaa tattggtcac ggtatcgacg ccaggcttgt gtccagattg
2761 atgatctgtc ggctggtaaa acggatccat ccttggaaac ccagctcatt aatctagttg
2821 cctcaaagga ggtgcccctt gatatggcgg aagtggaaga taagggtata ctgtttgaca
2881 gctcaatcct tgtcacctct tcaaatacat ccagcgtgcc aacaaatgca aacattaatc
2941 atgttagtgc atacaacaat aggcaaggat gtataattat gtgccggcaa aagcccgagt
3001 acagtccatt ggggatggaa ctggagggca cattccagcc ctttgacccg agaaacccac
3061 aggcctctgt agaatgcatg ttgcaacgat gggaaaaaga catccttatt cctgtcactg
3121 gctggatttc tgcgggtgct gctatggcgg aggcagtcaa taaattccgt ctgcatcgcg
3181 agaaggagat gatattacag aataatcatc tatcctcctt ccgtcctgcc catcccattt
3241 acaccgagtg tgccacattt ctctcaatgt attcacggga cgcaagtttt gtgcctcctg
3301 ttgatctcgg ttgtaagtgg aacgttccta ccggctacct gtccattgct gcggtggatg
3361 gtaggacttt tggctttacg cagtttggtg tctgcgaaga gatctcccat attttgaaat
3421 atactgagga gatggaagcg tacaccctgg agaaattcgc cccaacgata acgcgaacat
3481 tggctagcca aagccgatac aagttagtgg gcgcttttct caaaggaatg gtccgagatg
3541 aagacaatgt gatgtcactt aaatctcttg gaccgaagag cacgtcaacc cagcgcgaat
3601 tttttgaaac gcttggtatt ggggaacgtg tgtatttgag ggcagtgcag aagcgcatta
3661 ataagattaa taatgagcct gccttcaatg ttgacaacct gcatgcaaaa ctgctgaatt
3721 cagtggtttc ttcatacgaa tatgtgaagg agaaaggtcc aaagatcttt ccccttctca
3781 tgggatttat tgtagtagtt tttgcatgtt atggatttgt tatgcccctc ctctcgtttg
3841 cctcgggagg ttctgctgtt gggggcatgg tggccatgga acaaatgact gctgcttctg
3901 ttatttcttc aggaagcagc ccagttcacc accgatcaag ggcaccacca attcagccgc
3961 gctatgcacg ccacagactt gctggttctg caccagatga gtcttatgcc tatgaggagc
4021 tgatggtggt tttatacgtt gactcgacta ttgctccagt tgtcaacgct gtgcggggtc
4081 ctggccgttc catttttatt acggaacacc aagcaatggc catacccaac aactctacag
4141 ttgttgcaca tctcagcacc aaagatgttg ttgagattca ttgggagcac tctgtggcga
4201 tgaaggggaa ggtgaaggag actgaaattg tacaatatcg atgtccttca atccctgaat
4261 tgcctgctag gttgcgcggt tattttgaat atgatttaga gcgcgacctt cctggacctt
4321 ttactctcag agcgagcgtt tatcgtatga agagtccagg taaaattgat ctggagttgg
4381 tggattggac taaccatgat gctgagttga aaactaaggc actggttatt tctgatcctt
4441 ttggtgagga ccgttatcgg cgagaatatc cacgatatat ctcctaccgc cgatcggccc
4501 aactccatga ctgtggggct atctgtgtgg cccaaattgg cggacaatac cgtgttgttg
4561 gattgttaat ttccacagat aaatacaaca ctggtgttgg ccttctaccc tcagcattgc
4621 acatgacaac gtgttcctta acatatgtgc ctgaggaatg ggaggatgcg ccacgtggcc
4681 tgaagaagtt ggggtggaaa catgtttctg agttacccca tatgccacgg aaaacccagt
4741 atgaactggt caacgagagc attaggattc cttttgaaaa tcctaaaatc cctagtgttc
4801 ttgttgctga cgatcctcgt actattggta ctccagtaga gggtcaggat ccagtcctta
4861 aagcgatgga gaaattttat gagccaatgc tcaattttga tgaaactcca gtcgctaata
4921 gcaccgaaat ggcaattttt gagtcagttt gcgatgatat tgtgcagact tggtatgatg
4981 ccggtgctga ttttgaggat gtggatgatg atgtcgtgat caatggcgat gatgaatttg
5041 ataagctgat catggacaca tcagaaggat acccctacgt gcttgagcgg tcacgtggtg
5101 aaaaaggcaa aacccgctat tttgaaggtg gtcctggagc ttacactttg aaacctggta
5161 cttctgtgta ccgtgattat catacgctcc aggaagaagt ctcggttgag gggggcatac
5221 ccgagatggt atgtatagaa tgccccaagg atgaacttct tgtgccaagg aaagttttag
5281 aaaaacttgg cacgcgcaat tttgagattt tggaacttcc caagaatatg ctttttagaa
5341 agaaattctt gtcttgggct tcgttccttt cagaaatgcg ctggtgttta ccctgccagg
5401 ttggtattgt tgttcaaggc agagaatggg gtttgttgtt ggaccgtctt tcggagaaga
5461 attcagttgc ttacaactgt gattattcaa agtttgatgg tttgatgtca tgccaagttc
5521 ttgatgctat tggcaaaatg gttaataaat gttatgccaa taccaatcca aataagaagg
5581 gcaggggaga agttcctggg agtccgcccc aattagcacg acacaattta ttgatgtcaa
5641 tctttgggcg gaagtgtctt gcacgtagcc aagtttttga ggtgcgtggg ggcataccaa
5701 gtggttgtgc acttaccgtg ttgctaaact cagtttttaa tgagattttg atacggtacg
5761 tgtacaaaac ggtggttcca agtccagagt ttaatcggtt tgaaacgttt gtaactctgg
5821 cagtctacgg agatgataac ctcattgcag ttgatcctgt gatggccaat gcttttactg
5881 gtgaggttat caaaagaact ctagctagga agggcatcac tattactgat ggtagtgaca
5941 aactttcccc aacacttgag gcaaagcctc tatctcagct agacttcttg aaaaggagct
6001 tccttgtcag tagctccggg caagtgatgc ccgctttgga tagaacatgc atttattctt
6061 cattgcttta tctttcttcc aaaggggcag acccaatacc actcttgcac caaaatgtac
6121 aaaatgcttt gcaagagatg tatcaccgtc aagacagggc ggaatttgac actctcagga
6181 atttttatct tgagagatgt cctacttgga gatccgggcc aaatcgttta cttgattata
6241 atcaatgtca tgcccattgg atctcgcgtt acactggcca gccaaactcc aatcctgctg
6301 gagtcgttga tatgcttgtg gacccaaggc ataagtcttt tcttttgcca gccggtcccg
6361 ctaattggtc tatgccagtg gcagatggta tttttgtctg tgggcccaaa ttctttccaa
6421 atgcgccctc atttaccatt tgttttaatc gtttggctgc aggagaaact ggcattgaaa
6481 ttaagccagt acacgctgct acacaaggag ctatgcctac cggcaaattt gttaaaagct
6541 tccgtagcat gaagaagcgg cccgaattag aacttgcttt ggccgcgaag gatgctggga
6601 gcgcaatcta ttttaaaggt tgtgctccat acaatgatat atgggcatgt gctattgcct
6661 tctgctctgc ttttggtttt gctgataagc aagttctact tgctgttcat gacaattcca
6721 agcccattgg tgcttcttca cttagaagtt atttcaatgg caatcttgca ggcgatggtt
6781 gcgcccgtag gcttgaggtg cattctaagg ctggacaatt tgccgctgtc cagcgcttag
6841 cacctacgat gcaatgtaaa caaattgtgt atgatcccga ttttgcatcg aaacccacca
6901 cacatttgcg gaaatgtact gatcatggta ctgatggtgg gaaggcattg tatatagtgc
6961 aaggtttggg tgttacagcc gcaaaacttg tatgtacaga cctctgtgat ggacatgtcg
7021 tttcatgttc taataatttt gaccgtatgg tcaaggatgt cctgtcacag tcttgttttt
7081 agtttgtttg ctgatcttaa ttgattggcc ttcttttctt tgagtcaagt aaccaggagt
7141 agcccttctg actttaacta gttgggaaca ttgttgtacg tgttggttac tttagttaaa
7201 tacggacttt aattagttcg ttttagtttt cccgacccta ctgggttggt cctgtcctta
7261 ggtggatggg gaagctgtat aaactctgag ttcaagggtg tgagagcctt tgttccagtc
7321 tgtcagctgc tgtgttaaat gagctttcta ccgggctagc tcaaccggtg cacagtgaac
7381 actactgaag tggcgagtga gtagccaaac ttccggggta aatccctagt taacaaaatg
7441 tgttaggacg ttgtttctga cagctttgtt ggtcctattg agttttctaa agctgttttg
7501 tgtttgtgtt tgtttgattt tcttttcgtt tgcttgtttt atttacttgc tttcctagag
7561 tcggttgtcc aaaccaaaaa aaaaaaaaaa aaaaaaaa
//
