LOCUS       NC_023484               1359 bp ss-DNA     circular VRL 13-AUG-2018
DEFINITION  Sida yellow vein China alphasatellite clone J25.16, complete
            genome.
ACCESSION   NC_023484 NC_014065
VERSION     NC_023484.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Sida yellow vein China alphasatellite
  ORGANISM  Sida yellow vein China alphasatellite
            Viruses; Alphasatellitidae; Geminialphasatellitinae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Shahid,M.S., Ikegami,M., Waheed,A., Briddon,R.W. and Natsuaki,K.T.
  TITLE     Association of an alphasatellite with tomato yellow leaf curl virus
            and ageratum yellow vein virus in Japan is suggestive of a recent
            introduction
  JOURNAL   Viruses 6 (1), 189-200 (2014)
   PUBMED   24424499
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2014) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1359)
  AUTHORS   Shahid,S.M., Ikegami,M. and Natsuaki,K.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2013) Tokyo Nodai, Tokyo University of
            Agriculture Japan, 1-1-1 Sakuragaoka, Setagaya-Ku, Tokyo, Japan,
            Tokyo 156-8502, Japan
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KC677735.
            
            On Aug 1, 2016 this sequence version replaced NC_014065.1.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Sida yellow vein China alphasatellite"
                     /mol_type="genomic DNA"
                     /isolation_source="leaf"
                     /host="tomato"
                     /db_xref="taxon:1293961"
                     /clone="J25.16"
                     /country="Japan"
                     /collection_date="17-Jul-2011"
                     /collected_by="M.S. Shahid"
     gene            79..1026
                     /gene="Rep"
                     /locus_tag="BU33_gp1"
                     /db_xref="GeneID:18388466"
     CDS             79..1026
                     /gene="Rep"
                     /locus_tag="BU33_gp1"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_009002582.1"
                     /db_xref="GeneID:18388466"
                     /translation="MPALKAQWWCFTVFFVSATAPDLVPLFENTHVSYACWQEEESPT
                     TRRRHLQGYLQLKGQRTLNQVKAIFGDLKPHLEKQRARKTDEARDYCMKEETRVSGPF
                     EFGEYCPAGSHKRRQRELVIRSPVRMAEENPSVFRRVKAKIAEEDFQKSAPEIQISNL
                     KSWQSRLQTLLYRDPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAY
                     QYIGQLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLIKCIHVVVMSN
                     FLPDFEKISVDRVHVIPCRPCGVCLKHHNINDNCDDYID"
     misc_feature    103..360
                     /gene="Rep"
                     /locus_tag="BU33_gp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    622..906
                     /gene="Rep"
                     /locus_tag="BU33_gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 accccgcctc gagaccccga gttagagacc tgtccgtaca tttttccttc ttctcttata
       61 ttattcctct gagtaaacat gcctgccctc aaagctcaat ggtggtgttt cactgtcttc
      121 ttcgtgtccg ctacggctcc tgatttggtg cccctgttcg agaacacgca cgttagttac
      181 gcctgctggc aagaggaaga gtctcccacg actcgacgtc gccacctgca ggggtatctc
      241 caattgaagg gtcagaggac cttgaaccag gtgaaggcaa tatttgggga tttgaagccc
      301 catcttgaga aacagcgagc tcgtaagacc gacgaggctc gcgattactg tatgaaagag
      361 gaaactaggg tttccggccc ctttgaattt ggggagtact gtcctgctgg ttctcacaaa
      421 cgccgacaaa gggaactcgt aattcgatct ccggtgagaa tggcagagga aaatccgtct
      481 gtcttccgac gagtcaaggc aaagattgct gaggaagact tccagaagag cgcgcctgag
      541 attcaaattt caaatttgaa atcttggcaa tcgcgcctac agacgctcct gtatagggac
      601 ccagatgacc gcactatctt ctgggtttac ggaccggatg gtggggaagg gaaatccacc
      661 tttgccagag acctgtacag aagtgggtcc tggttctata cacgtggagg atctgcagat
      721 aatgtagctt accagtacat aggtcaatta ggaaataata ttgtatttga tatccctcgt
      781 gataagaagg attatctaca atacagttta atagagatgt ttaaggatag attaatagtt
      841 agtaataagt acgagcctct tatggcaccc ttaattaaat gtattcatgt agttgtaatg
      901 tctaattttc ttccagactt tgagaaaatt agcgttgata gagtccatgt aatcccatgt
      961 agaccatgtg gtgtttgcct taaacaccat aatattaatg ataattgtga tgattatatt
     1021 gattaaataa ttttgtttct ttaataaaag aaagaatgaa atgaaaaaaa ataaacgaac
     1081 aatatccatc cttattcatt tgaataataa gtgccgcgca gcggcattca aaaaaataaa
     1141 taaaaaaaaa taaaaaatat gtctacaaaa acgacgtcgt actcataaaa acatatttgg
     1201 gtctaaaaca taaatatgtg aaacttgcgt gcttgcggaa caaagactga ggaagatgcg
     1261 gttaagcgga gtaaatatga taagtcttca ggggtatgcg cttgcaatta atgaggtctc
     1321 ttggctataa ataacacgtc acgaggcggg tgtagtatt
//