LOCUS NC_023872 2225 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Dragonfly-associated circular virus 1 isolate FL1-2X-2010, complete
genome.
ACCESSION NC_023872
VERSION NC_023872.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Dragonfly associated gemykibivirus 1
ORGANISM Dragonfly associated gemykibivirus 1
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus;
Gemykibivirus draga1.
REFERENCE 1 (bases 1 to 2225)
AUTHORS Rosario,K., Dayaram,A., Marinov,M., Ware,J., Kraberger,S.,
Stainton,D., Breitbart,M. and Varsani,A.
TITLE Diverse circular ssDNA viruses discovered in dragonflies (Odonata:
Epiprocta)
JOURNAL J. Gen. Virol. 93 (PT 12), 2668-2681 (2012)
PUBMED 22915694
REFERENCE 2 (bases 1 to 2225)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2014) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2225)
AUTHORS Rosario,K., Dayaram,A., Marinov,M., Ware,J., Kraberger,S.,
Stainton,D., Breitbart,M. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2012) College of Marine Science, University of
South Florida, 140 7th Ave S, St. Petersburg, FL 33701, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to JX185430.
##Assembly-Data-START##
Assembly Method :: Sequencher (Gene Codes Corporation) v. 4.7
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2225
/organism="Dragonfly associated gemykibivirus 1"
/mol_type="genomic DNA"
/isolate="FL1-2X-2010"
/host="Miathyria marcella"
/db_xref="taxon:1234887"
/country="USA: St. Petersburg, Florida"
/collection_date="15-Sep-2010"
stem_loop join(2212..2225,1..21)
/note="contains nonanucleotide motif 'TAATATTAT'"
gene 197..1069
/locus_tag="DH89_gp1"
/old_locus_tag="DfCyV-5_gp1"
/db_xref="GeneID:18983270"
CDS 197..1069
/locus_tag="DH89_gp1"
/old_locus_tag="DfCyV-5_gp1"
/note="similar to coat protein identified in the mycovirus
Sclerotinia sclerotiorum hypovirulence-associated DNA
virus 1"
/codon_start=1
/product="putative coat protein"
/protein_id="YP_009021859.1"
/db_xref="GeneID:18983270"
/translation="MYRRKYTRTIRRGRAGSSKKRRSYVGRRLSSRRTTKTVMKRTSR
RRILNISSQKKRNNAQPVNFNYLGESPIPGSKVMGSDRTTYLLWRPTALTDDTDIYSS
ASRGAQQIYWRGIKERAEVGTSSGAAWRWRRIVFEAKSLNINGLISNVETSAGFNRAM
VELSGDPPANLRNSLESFLFQGSVGVDWNTVFNAKVDNNRCRLLSDKVRHLQSGNDRG
RFYTFRQWIPLNKTMVYNDDEVGDDKQSNTFASPGRKGMGDVYVYDMFQCLTSDAINT
LNFNPQATLYWHER"
gene complement(1044..2196)
/locus_tag="DH89_gp2"
/old_locus_tag="DfCyV-5_gp2"
/db_xref="GeneID:18983267"
CDS complement(join(1044..1428,1625..2196))
/locus_tag="DH89_gp2"
/old_locus_tag="DfCyV-5_gp2"
/note="Rep; similar to replication-associated protein
identified in the mycovirus Sclerotinia sclerotiorum
hypovirulence-associated DNA virus 1"
/codon_start=1
/product="spliced replication-associated protein"
/protein_id="YP_009021860.1"
/db_xref="GeneID:18983267"
/translation="MPFRFAAKYGLLTYPQCGDLDPWAVNDMLGRLGAECVIGRENHQ
AGGVHLHAFFMFERKFESRNVRVFDVDGHHPNIVRGYSTPEDGWAYATKDGDVVAGAL
ECPRPRTEVSESSSKWARAILAETREEFFAIVAELDPRALCVSFGSLRAYADWKYRPA
RDPYITPEGISFDTSELPELDLWVQQTLSGFTGRPKSLILIGDTRLGKTLWARSLGRH
AYFGGLFCLDESLEDVDYAVFDDMQGGLEFFHAYKFWLGAQKQFYATDKYRGKQLVNW
GRPSIYISNTNPLADKGADVDWLMGNCVIVHVDRPIFRASTE"
misc_feature complement(1903..2190)
/locus_tag="DH89_gp2"
/old_locus_tag="DfCyV-5_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1368..1428,1625..1851))
/locus_tag="DH89_gp2"
/old_locus_tag="DfCyV-5_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(1044..1277)
/locus_tag="DH89_gp3"
/old_locus_tag="DfCyV-5_gp3"
/db_xref="GeneID:18983269"
CDS complement(1044..1277)
/locus_tag="DH89_gp3"
/old_locus_tag="DfCyV-5_gp3"
/note="RepB"
/codon_start=1
/product="replication-associated protein"
/protein_id="YP_009021861.1"
/db_xref="GeneID:18983269"
/translation="MQGGLEFFHAYKFWLGAQKQFYATDKYRGKQLVNWGRPSIYISN
TNPLADKGADVDWLMGNCVIVHVDRPIFRASTE"
gene complement(1447..2196)
/locus_tag="DH89_gp4"
/old_locus_tag="DfCyV-5_gp4"
/db_xref="GeneID:18983268"
CDS complement(1447..2196)
/locus_tag="DH89_gp4"
/old_locus_tag="DfCyV-5_gp4"
/note="RepA"
/codon_start=1
/product="replication-associated protein"
/protein_id="YP_009021862.1"
/db_xref="GeneID:18983268"
/translation="MPFRFAAKYGLLTYPQCGDLDPWAVNDMLGRLGAECVIGRENHQ
AGGVHLHAFFMFERKFESRNVRVFDVDGHHPNIVRGYSTPEDGWAYATKDGDVVAGAL
ECPRPRTEVSESSSKWARAILAETREEFFAIVAELDPRALCVSFGSLRAYADWKYRPA
RDPYITPEGISFDTSELPELDLWVQQTLSGLSTGKQPPPSAPLRGVPEQISARGCDSM
FLRTALPPGAQSAHGQMSGYVPACHSGRYTG"
misc_feature complement(1903..2190)
/locus_tag="DH89_gp4"
/old_locus_tag="DfCyV-5_gp4"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
ORIGIN
1 taatattatt ctctacggtg gagcagtggc agtggcacct atatagaagg ctatcggaga
61 taagactact aaccccgcta aacccgaagg agatagtata aatatctccg ttacccccgc
121 ttgttagtca tggatcattc acgctgttct catcaaactc ctttgggcaa gctcttgtgc
181 gaagccaacc aacaatatgt atcggagaaa gtacacccgt accattcgac gaggccgcgc
241 aggttcctca aaaaaacgcc gaagctacgt cgggaggagg ctctcttccc gtcggacaac
301 gaagacagtc atgaagagga cctcccgaag gaggattctc aacatatcct ctcaaaaaaa
361 gaggaacaac gcccaaccgg tgaacttcaa ctacctagga gagagcccga ttccgggttc
421 caaggtcatg ggaagtgatc gtactaccta cctcctttgg cgacctaccg ccctcaccga
481 tgataccgac atatattcta gcgcctctcg tggagctcaa cagatctact ggcgtggtat
541 taaggagcgc gcagaggttg gtacctcttc tggtgctgcc tggagatggc gtcgaatagt
601 tttcgaagcc aagtccctca acatcaatgg tctcatttca aatgtcgaga ctagcgcagg
661 gttcaaccga gctatggtcg agcttagtgg tgaccccccc gctaacctcc gcaactcctt
721 ggagtccttc ctgttccagg gttctgttgg cgtcgattgg aatactgtct tcaatgcgaa
781 ggttgataac aaccgctgcc gtctcctctc ggacaaggtc cgtcacctgc agtccggaaa
841 cgatcgtggc aggttctata cattccgcca atggattcct ctcaacaaaa caatggtgta
901 caacgacgac gaagttggcg atgacaaaca gtcgaacaca ttcgcgtcac ccgggaggaa
961 gggtatggga gatgtctacg tgtatgacat gttccagtgt ttgacttctg atgctatcaa
1021 cactctcaac ttcaaccccc aagctactct gtactggcac gaaagatagg ccggtctaca
1081 tgtacgatga cgcagttccc catcaaccaa tccacgtctg cccctttgtc tgcaaggggg
1141 ttagtgttgg agatgtatat agacggcctc ccccaattga ccaattgctt gccacgatac
1201 ttgtctgtgg cgtaaaactg tttctgtgcc cctaaccaga atttgtaagc gtgaaaaaac
1261 tcaagtcctc cttgcatatc gtcgaaaacg gcatagtcga cgtcctccaa tgactcatcc
1321 aaacaaaata ggcccccaaa ataggcatgt ctgcctagtg aacgggccca caacgtcttt
1381 cccaaacgag tatccccaat taggatcaaa gatttagggc gtcctgtgct tagtcagcaa
1441 aataaactaa ccggtatatc gcccactatg acaagcgggc acgtagcccg acatttgccc
1501 gtgggcactc tgtgccccgg gcgggagggc cgtgcgtaag aacattgaat cacatcccct
1561 agcagagatc tgttccggga ccccccgaag cggagcggag ggagggggtt gcttaccagt
1621 tgacaatcca gataaagtct gttgtaccca gagatccagt tctggcagct cactcgtgtc
1681 gaatgaaatt ccctcgggag tgatgtaggg atcacgagct ggtctgtact tccagtcggc
1741 gtaagctcgt aaagatccga atgacacgca aagtgcccta ggatccaact ccgcgacaat
1801 agcaaaaaac tcttctcgag tttcagccag tatcgctcta gcccacttcg aactagactc
1861 agatacctct gttcttggtc gggggcattc gagggctcct gcaacaacat ccccatcctt
1921 cgtcgcatac gcccaaccat cttctggtgt gctgtagcca cggacaatgt ttgggtggtg
1981 tccgtccaca tcgaaaacac ggacatttcg tgactcaaac ttccgttcga acataaagaa
2041 agcatggaga tgaactcctc cagcttgatg attttctcgt ccaatgacac actcagctcc
2101 aagtcgtcca agcatgtcat taactgccca gggatccagg tccccgcatt gagggtaagt
2161 gaggaggcca tatttggctg caaaacgaaa aggcatgagg tcatgtgact gccaccgtag
2221 agatt
//
