LOCUS NC_024452 5257 bp DNA linear VRL 13-AUG-2018
DEFINITION Chicken parvovirus ABU-P1, complete genome.
ACCESSION NC_024452
VERSION NC_024452.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken parvovirus ABU-P1
ORGANISM Chicken parvovirus ABU-P1
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae;
Aveparvovirus; Aveparvovirus galliform1.
REFERENCE 1 (bases 1 to 5257)
AUTHORS Day,J.M. and Zsak,L.
TITLE Determination and analysis of the full-length chicken parvovirus
genome
JOURNAL Virology 399 (1), 59-64 (2010)
PUBMED 20097398
REFERENCE 2 (bases 1 to 5257)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2014) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5257)
AUTHORS Day,J.M. and Zsak,L.
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2009) Southeast Poultry Research Laboratory,
United States Department of Agriculture, 934 College Station Road,
Athens, GA 30605, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to GU214704.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5257
/organism="Chicken parvovirus ABU-P1"
/mol_type="genomic DNA"
/strain="ABU-P1"
/db_xref="taxon:717641"
/country="Hungary"
repeat_region 1..206
/note="5' direct terminal repeat"
/rpt_type=long_terminal_repeat
gene 411..2495
/gene="NS1"
/locus_tag="HR27_gp1"
/db_xref="GeneID:19738573"
CDS 411..2495
/gene="NS1"
/locus_tag="HR27_gp1"
/note="nonstructural protein"
/codon_start=1
/product="NS1"
/protein_id="YP_009046818.1"
/db_xref="GeneID:19738573"
/translation="MAFPTRGGFSAILNLPSDLIVGQKNMPVFECVTAGYTSPDSGEF
VASRFPPNHELRQEIRNFIGNPEWDDPDLTWIDFHIQLAKHAIDVETKLNPNLQIFWQ
MEKSSQSGRYHLHLLFVEGCTSRQITWIVKRMRRELCNKAAEMLHMFCPDFPKSQIWG
SLVNIQNAMLSLNRGYSPRIGKPIPQPVNPYSFLKYYMFNSAKMSFLRGATPKLAEKL
PIGTRYARFEGSPDLDEGPEIPSQELTPGDTLPVCYVSTETGWGNGGGETVIKTSIIE
KLCMEALRLCRENHIFTMKAFKLKFPDKFMQFSSRNQGLVKLEETINLYCETIINEHD
AWEIAKSIHGDVDTADLDDNLAIRLCSYQGYSPKYVARLILCWLSGQAGKKNALYFHG
PANTGKTMMAESICKMVQIYGNVNHNNKNFPLNDCHNKAVLWWEECSMTEEHVESAKC
IMGGSSVRIDKKNQDSVLLCKTPIVITSNNDITQVSSRNAISTVHAAAIRARCLKFTF
NNWLTSNWGLITVDQMYQFLCWGELEGIPTVDSLLKDHPEFNGTLPYNQPKGKFCADC
VNQFSTATNLTVCPACSGWTRKPFSEEEEPPYTGSESGLFEKANEGKNEVPGIYPVNS
GSRLIPEAPILQKPSTYWETEIPSESSGFPDEPDFTASAKLLLKVDDLHLESDLKVEQ
DPLECKKCCLVQ"
misc_feature 1236..2021
/gene="NS1"
/locus_tag="HR27_gp1"
/note="Parvovirus non-structural protein NS1; Region:
Parvo_NS1; pfam01057"
/db_xref="CDD:426020"
gene 2696..3001
/gene="NP1"
/locus_tag="HR27_gp2"
/db_xref="GeneID:19738570"
CDS 2696..3001
/gene="NP1"
/locus_tag="HR27_gp2"
/codon_start=1
/product="NP1"
/protein_id="YP_009046819.1"
/db_xref="GeneID:19738570"
/translation="MCWYNANITQIQTVEGDPCTNPDVFHELYFPIKQHAMDARMLKM
KIEDKIQKGDFTQDIHLDMTLTQCIQTALSDDPAGIWPCVDRLANYCNVILASIGTQ"
gene 2998..5025
/gene="VP1"
/locus_tag="HR27_gp3"
/db_xref="GeneID:19738571"
CDS 2998..5025
/gene="VP1"
/locus_tag="HR27_gp3"
/note="minor capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YP_009046820.1"
/db_xref="GeneID:19738571"
/translation="MKYKAPKGYVPSLPTTDEEAYHHTRWWLDHVENYGKNKAIGRGK
GKARKELTPQQKAERKRFFITQAQKNKKPNYGIPSSSQHKEFFKNHQGAQGGKAKQKT
KHIENQAPQRQEDPEEGPAPKQPRVEENPYNQEELEEMMADENEPDQSGIPMELSDGP
GTVGGGGGGGIGHSTGNWNCDTIWAENTCKTYASRHCVCLMRDMDQYKAIGNANGQHG
LDTENQTQYFGFSTPWNYIDFNQYSVHFSPRDWQQLVNNYSRWRPRAVHVKIFNLQVI
QKTVTDSGTQYSNDLTGTIQIFADQEGRYPRLLYPNQTTLMGPFPSNIYYLPQYAYMT
SMFNSGGPTVSSWWGFPTRESAFYCLDESPSQMLRTGNEWETTFIFPSSTQWCSNKIS
TVSITQRQNPLYDTWNVNGRGDDAKRGNFCTWRSPWYPGPYIYLTDTSAASQRLENLA
NVAVGPDGMPLAPGMPQYRSESDKDEYLHTFWVPKKVKMNEGDIRNAQIDVSTATKVQ
VDTSTLYNTCPRSGYMSTVSQGGAPAPIVWSGCVPGMIWDNRPATYFDPIWQQFPETD
EQFKIISQLGGIPVKESPGHIFVKVTPKPTGAANGLIDEYCTFTCTVEIEWELEPLNT
HRWNMRSMISYETTDAKAGRQIVDENGQYQVNVNSADITRLYMTKRAPRTN"
misc_feature 3526..4920
/gene="VP1"
/locus_tag="HR27_gp3"
/note="Parvovirus coat protein VP2; Region: Parvo_coat;
pfam00740"
/db_xref="CDD:395599"
gene 3415..5025
/gene="VP2"
/locus_tag="HR27_gp4"
/db_xref="GeneID:19738572"
CDS 3415..5025
/gene="VP2"
/locus_tag="HR27_gp4"
/note="major capsid protein"
/codon_start=1
/product="VP2"
/protein_id="YP_009046821.1"
/db_xref="GeneID:19738572"
/translation="MMADENEPDQSGIPMELSDGPGTVGGGGGGGIGHSTGNWNCDTI
WAENTCKTYASRHCVCLMRDMDQYKAIGNANGQHGLDTENQTQYFGFSTPWNYIDFNQ
YSVHFSPRDWQQLVNNYSRWRPRAVHVKIFNLQVIQKTVTDSGTQYSNDLTGTIQIFA
DQEGRYPRLLYPNQTTLMGPFPSNIYYLPQYAYMTSMFNSGGPTVSSWWGFPTRESAF
YCLDESPSQMLRTGNEWETTFIFPSSTQWCSNKISTVSITQRQNPLYDTWNVNGRGDD
AKRGNFCTWRSPWYPGPYIYLTDTSAASQRLENLANVAVGPDGMPLAPGMPQYRSESD
KDEYLHTFWVPKKVKMNEGDIRNAQIDVSTATKVQVDTSTLYNTCPRSGYMSTVSQGG
APAPIVWSGCVPGMIWDNRPATYFDPIWQQFPETDEQFKIISQLGGIPVKESPGHIFV
KVTPKPTGAANGLIDEYCTFTCTVEIEWELEPLNTHRWNMRSMISYETTDAKAGRQIV
DENGQYQVNVNSADITRLYMTKRAPRTN"
misc_feature 3526..4920
/gene="VP2"
/locus_tag="HR27_gp4"
/note="Parvovirus coat protein VP2; Region: Parvo_coat;
pfam00740"
/db_xref="CDD:395599"
repeat_region 5052..5257
/note="3' direct terminal repeat"
/rpt_type=long_terminal_repeat
ORIGIN
1 gagtcttgct ttctctagtc aacctacttc catcctccat ggaagtatta ttaagtgtag
61 tttttatacc ttatcgctag gggaatccct ggcgcttgcg aacagcgggc ttcgcccgcg
121 cccgaagggc gtcttagaag gcgtgactat gcatatgagg gataacatgg aagttggtgg
181 ttggttgtag agagaaagca agactcataa cgggtggtat gacctatcaa tgattgacta
241 gctgagtcat gctgacttcg gattcgctgg gtatataagg cggtgtctgg agcggccaat
301 cacccatcca ccttaagtgg ttccgggtca ctctcagagc gctcatttgc cctttgacag
361 gcgaacaatc cgcacgttga ttcggctgcc agtgctgctg agctggtaag atggcattcc
421 caacacgcgg tgggttttcc gctattctaa atcttcccag cgatttaatc gtgggacaga
481 aaaatatgcc tgtattcgag tgtgtaactg ccggttacac ttctccggat tcaggcgaat
541 tcgtggcttc tagatttcca cccaaccacg aattgagaca agaaattaga aattttatcg
601 ggaacccaga atgggacgat ccagatttga catggataga tttccacatt caattggcga
661 aacacgccat agacgtggaa actaaactca atccaaattt acaaattttc tggcaaatgg
721 aaaaatctag tcagtcggga agatatcatc tccatttact gttcgtagaa ggatgtactt
781 ccaggcaaat tacatggata gtcaaaagaa tgagaaggga actttgcaac aaagctgcag
841 aaatgttgca catgttttgt cctgatttcc ccaaaagtca aatttgggga tcgctggtga
901 atatccaaaa cgctatgctt tcactgaata gaggatactc accgagaatt gggaaaccaa
961 tcccccaacc agtgaatcca tactcatttc taaaatacta catgttcaat tctgctaaaa
1021 tgagctttct gagaggggct actccaaaat tagctgaaaa attaccaatt ggtacaagat
1081 atgctagatt tgaagggtct cctgacctgg acgagggtcc cgaaattcca tcgcaggaat
1141 taactccagg ggacactcta cctgtatgct atgtaagtac tgaaactggt tgggggaacg
1201 gtggggggga gaccgtgatc aaaaccagta tcattgaaaa attatgcatg gaagcattaa
1261 gattatgcag agaaaatcac atttttacca tgaaagcatt taagctaaaa ttcccagaca
1321 aattcatgca gttcagttcg cgaaatcagg ggttagtgaa attagaagaa acaataaacc
1381 tgtattgtga gaccattatc aacgagcacg atgcgtggga aatagctaaa tcaatacatg
1441 gagatgttga cacagctgat ctagatgata atttagccat ccggttatgc agctaccaag
1501 gatatagtcc aaagtacgtt gctagactga tattgtgctg gctatccgga caagcaggga
1561 aaaaaaacgc attatatttc cacggaccag ccaatactgg taaaacaatg atggcagaaa
1621 gcatatgcaa aatggtacaa atatacggta acgtaaatca taacaacaaa aacttcccac
1681 tcaacgactg tcacaacaaa gcagtacttt ggtgggaaga atgtagcatg acggaagaac
1741 acgtagaatc tgcaaaatgt atcatggggg gatcctcagt gagaatagat aaaaaaaatc
1801 aagattcagt tctactatgt aaaactccaa tcgttattac ttctaataac gatatcactc
1861 aagtttcaag caggaatgcc atctcaacag ttcatgcagc tgcaataaga gcaagatgct
1921 taaaatttac atttaacaat tggctaactt caaattgggg actgataacc gttgatcaaa
1981 tgtatcaatt tttatgctgg ggagaattag agggcattcc gaccgtggat agtctcctga
2041 aagatcatcc cgaatttaac gggactttgc cttataacca acccaaaggt aaattttgtg
2101 ccgattgtgt taaccagttc agcactgcaa ctaacctgac cgtgtgccca gcctgctccg
2161 gatggacaag aaagccattc tccgaagaag aggaaccccc ctatactggt tctgaatccg
2221 ggctctttga gaaagccaac gaaggtaaga atgaggtccc agggatttat cccgtaaata
2281 gtggatccag gttaatccct gaggccccaa tcttacagaa accatcgacc tattgggaga
2341 cggagatccc cagcgaatcg agtggatttc cagacgagcc agacttcacc gcaagcgcaa
2401 aacttctcct gaaagtggac gatctccacc tagaaagcga tctgaaagtg gagcaggatc
2461 ctctggagtg caaaaagtgc tgtctggttc aataggccaa ctcgaaggta aaagcataac
2521 atttactgat gatctacctt cccttactga gttattttgc gacgaaacgc tgcccccatc
2581 cccgacatcc ccaatcaatc tccctgaacc ctctcgagtg gtacaatggg gggacttcaa
2641 agctcaatgg gtggaaggat acattggaaa gtggagggtt gcattttcta atttcatgtg
2701 ttggtataat gctaatatta cacagattca gacagtagaa ggtgatcctt gtactaatcc
2761 tgatgttttt cacgagttat atttccctat caagcaacac gccatggacg cacgcatgct
2821 gaaaatgaaa atcgaagaca aaatacaaaa gggcgacttc acacaagaca tacacctaga
2881 catgacatta acacaatgca ttcaaacagc acttagcgac gacccagcag ggatatggcc
2941 atgtgtagac aggttagcta attactgcaa tgttatattg gcttctatag gcacacaatg
3001 aaatacaaag ctccgaaagg ctacgtccct tcactgccca ccactgatga agaagcatat
3061 caccacacta gatggtggct ggatcatgtt gaaaattatg gaaaaaataa agctattggt
3121 agaggcaaag gaaaagctag gaaagagctc acaccacaac aaaaagctga acgcaaacgc
3181 ttttttatca cgcaggcaca aaaaaataaa aaacctaatt acggcatccc atcttcatcg
3241 cagcacaaag agtttttcaa aaatcatcag ggggcgcaag ggggaaaagc aaagcaaaaa
3301 accaaacata tagaaaatca agcaccacaa aggcaagagg acccagagga agggcccgca
3361 cctaaacaac ctagagtaga agaaaaccca tataatcaag aagaattaga agaaatgatg
3421 gcagatgaaa atgaacctga tcaatctggg atccctatgg aattaagcga cgggcctggg
3481 actgtgggag gaggtggtgg tgggggaatc gggcattcta ccggtaattg gaattgtgat
3541 actatatggg ctgaaaatac atgtaaaacc tatgcaagcc gccattgtgt ctgtcttatg
3601 cgtgacatgg atcaatataa agcaattggc aacgctaacg ggcaacacgg gttagacact
3661 gaaaaccaaa cacaatactt tggtttctct acaccatgga attatattga ctttaatcaa
3721 tacagcgtgc actttagtcc acgagattgg caacaactag ttaataatta ttcgagatgg
3781 cgcccacgcg ccgtacacgt gaaaatcttt aacctgcaag tcatccagaa aaccgtaaca
3841 gatagcggta cccagtactc taacgacttg acaggaacaa tccaaatatt tgcagatcag
3901 gaaggcagat atcctagatt gttataccct aaccaaacaa ctctaatggg tccatttcca
3961 tccaatatat actatctgcc tcaatacgca tacatgacaa gcatgtttaa ttcgggtgga
4021 ccaacagtat catcgtggtg gggatttcca acacgcgaaa gcgcatttta ctgtctagac
4081 gaaagcccct cgcaaatgtt aaggaccggt aatgagtggg aaaccacatt tatctttcca
4141 tcgagtacac aatggtgtag caataaaata tcaaccgtgt ccattacaca aagacaaaac
4201 ccattatacg atacatggaa cgtcaatggc agaggcgatg atgctaaaag aggcaatttc
4261 tgtacttgga gaagcccatg gtatccaggg ccttacattt acctaaccga tacatccgca
4321 gcatcacagc gtttagaaaa tcttgctaac gttgccgtag gcccagacgg catgcctcta
4381 gcaccaggaa tgccacaata cagatcagaa tccgataaag acgaatatct acatacattt
4441 tgggtaccta aaaaagttaa gatgaacgaa ggagatatac gtaacgcgca aatagatgta
4501 tccactgcaa ccaaagtaca agtagataca tcgacactat acaatacatg tcctagatca
4561 ggatacatgt ccactgtttc acagggaggg gcacccgcac ctattgtctg gtcagggtgt
4621 gtacctggca tgatatggga caataggccg gccacctact ttgatccgat atggcaacaa
4681 ttcccagaaa cagacgaaca attcaaaatt atctctcaat tggggggtat acctgttaaa
4741 gaatcacctg gtcacatttt tgtcaaagtc acgcctaagc caaccggggc tgcaaatggt
4801 ttgatcgatg aatattgtac ttttacgtgt actgtcgaaa tagaatggga attagaacca
4861 ctcaacactc acagatggaa catgagaagt atgatttcgt acgagaccac cgatgccaaa
4921 gctggaagac aaattgtcga tgaaaatggt caataccagg tcaatgttaa ctcggctgac
4981 attactcgtc tgtatatgac caagcgcgcg ccgcggacca actaatgtaa ctttcaaaaa
5041 atttcaataa agagtcttgc tttctctagt caacctactt ccatcctcca tggaagtatt
5101 attaagtgta gtttttatac cttatcgcta ggggaatccc tggcgcttgc gaacagcggg
5161 cttcgcccgc gcccgaaggg cgtcttagaa ggcgtgacta tgcatatgag ggataacatg
5221 gaagttggtg gttggttgta gagagaaagc aagactc
//
