LOCUS NC_024888 4733 bp DNA linear VRL 13-AUG-2018
DEFINITION Bufavirus-3 genes for NS1, putative VP1, hypothetical protein, VP2,
complete cds, strain: BTN-63.
ACCESSION NC_024888
VERSION NC_024888.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Bufavirus-3
ORGANISM Bufavirus-3
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae.
REFERENCE 1
AUTHORS Yahiro,T., Wangchuk,S., Tshering,K., Bandhari,P., Zangmo,S.,
Dorji,T., Tshering,K., Matsumoto,T., Nishizono,A.,
Soderlund-Venermo,M. and Ahmed,K.
TITLE Novel human bufavirus genotype 3 in children with severe diarrhea,
bhutan
JOURNAL Emerging Infect. Dis. 20 (6), 1037-1039 (2014)
PUBMED 24856373
REMARK DOI:10.3201/eid2006.131430
REFERENCE 2 (bases 1 to 4733)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2014) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4733)
AUTHORS Ahmed,K., Yahiro,T. and Matsumoto,T.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2013) Contact:Takaaki Yahiro Faculty of Medicine,
Oita University, Microbiology; 1-1 Idaigaoka, Hasama, Yufu, Oita
879-5593, Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AB847987.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4733
/organism="Bufavirus-3"
/mol_type="genomic DNA"
/strain="BTN-63"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1391667"
/country="Bhutan"
/collection_date="2010-04-26"
gene 1..2022
/locus_tag="LL81_gp1"
/db_xref="GeneID:20357429"
CDS 1..2022
/locus_tag="LL81_gp1"
/codon_start=1
/product="NS1"
/protein_id="YP_009058894.1"
/db_xref="GeneID:20357429"
/translation="MALSKDVMDGIDWIKKKRDKQGLSFVFKLNDLHFKPTKDGQGVN
ITWKDYRKNPRNDEIKQVIELDQQTVSNRDGDETKKISIMNPPHRNAIILTGLVKKTL
FDYFKVKNIEPNEVDWFIQSELGKDTGLHIHVLVCSDKINNHSGKWMQKYFAEKWGLY
LTLVLAMDSEHLQALLQQTKFRKQVEENEWVDVLKYTHPQTKKAYCKNINFGEMIANY
FLIKKPVITNDDKGYIYSVDSGFKLNNLSFNDRYLVARHCQNLFRRQDDSELTTIQPQ
QKKMKRMVSAKEKSIKETVDTLTDKRIITREKWMLQDPDSYIQFIAQPGGEQTCSAVL
DIATLRIATEKSAYDLIKEHPGKLKHIKKTKAWKLIKNNNMNPQKVYHAIMCCLNKQM
GKRNTILLCGPASTGKSLLAQKIAKLVGNTGCYNPSNANFPFNDCVNKNLIWIEEAGN
LGTQVNSFKAIMSGQAIRLDQKGKGSKSIEPTPVIMTTNEDITKVIVGTELKTEHRQP
IMDRCLRIELKNKLSGDHGLLEDTELPAIFKYLEGHGFYPTMWSYMDRWGTTPTWGEN
WNTKAKEASSHLIEQETEEEEGPSAPPNTPTEWSASSTAQSTGKSTKPTLAQSLDPDD
QEFALLLKDIEETERALETIQEEEENIEELAATGYGQPLFSGPDVNASN"
misc_feature 853..1650
/locus_tag="LL81_gp1"
/note="Parvovirus non-structural protein NS1; Region:
Parvo_NS1; pfam01057"
/db_xref="CDD:426020"
gene 2009..4509
/locus_tag="LL81_gp2"
/db_xref="GeneID:20357426"
CDS join(2009..2033,2402..4509)
/locus_tag="LL81_gp2"
/codon_start=1
/product="putative VP1"
/protein_id="YP_009058895.1"
/db_xref="GeneID:20357426"
/translation="MPAIRKARGWVPPGYNYLGPFNQDFSKKPTNPSDKAARKHDLEY
NKLIKQGHNPYWNYNHADEDFIKETDQATDWGGKFGNFIFRAKKALAPELAPPTKKKT
KTKHTEPEYSHKHIKAGTKRGKPFYLFVNLARKKARMSESNEIDEQPAEQQPLAATAA
KAGGGGGGGGSGVGHSTGNYNNRTIFHYHGDEVTIICHATRHIHLNMSPTEEYKIYDT
NHGPEFPNTGDQTQQGRNTVNDSYHAKVETPWYLINPNSWGIWFNPADFQQLITTCTH
VTIETLTQEIDNIVIKTVSKQGSGAEETTQYNNDLTALLEVALDKSNMLPWVADNMYL
NSLGYIPWRPCKLTQFCYHTNFYNTINLLEGTQQNQWSQIKEGIQYDNLQFTPIETSA
EIDLLRTGDRWTSGTYHFKCKPTQLFYHWQSTRHIGAPHPTTSPEQEGQKGQIIQDTN
GWQWGDRDNPISASTTVKDFHIGYSWPEWRWHYSTGGPSINPGSAFSQTPWGSEVGGT
RLTQGASEKAIFDYNHGEAEPGHRDQWWQNNAQQTGQTNWAIKNAHQSELRNATASRE
TFWTQDYHNTFGPYTAVDDVGIQYPWGAMWGKEPDTTHKPMMSAHAPFTCQNGPPGQL
LVKLAPNYTDSLNNEGLQTNRIVTFATFWWTGRCTFKAKLRTPRQFNAYQLPGIPSGT
NPKKFVPDAIGRFELPFMPGRAMPNYTY"
misc_feature join(2030..2033,2402..2637)
/locus_tag="LL81_gp2"
/note="Parvovirus coat protein VP1; Region: Parvo_coat_N;
pfam08398"
/db_xref="CDD:429973"
misc_feature 2911..4287
/locus_tag="LL81_gp2"
/note="Parvovirus coat protein VP2; Region: Parvo_coat;
pfam00740"
/db_xref="CDD:395599"
gene 2009..2401
/locus_tag="LL81_gp3"
/db_xref="GeneID:20357427"
CDS 2009..2401
/locus_tag="LL81_gp3"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009058896.1"
/db_xref="GeneID:20357427"
/translation="MPAIRKARGKFHFLIITLTMEELKQLWRALPVLLGFCLMLIFFL
FFLWTFLSSYCNWNTKGNLARQLSSPKARSKRTLMMSFLPTLLSLTLVLLIWGLFIWL
FYFDKQRIINAIIIKNENGNYTFTIQPL"
gene 2791..4509
/locus_tag="LL81_gp4"
/db_xref="GeneID:20357428"
CDS 2791..4509
/locus_tag="LL81_gp4"
/codon_start=1
/product="VP2"
/protein_id="YP_009058897.1"
/db_xref="GeneID:20357428"
/translation="MSESNEIDEQPAEQQPLAATAAKAGGGGGGGGSGVGHSTGNYNN
RTIFHYHGDEVTIICHATRHIHLNMSPTEEYKIYDTNHGPEFPNTGDQTQQGRNTVND
SYHAKVETPWYLINPNSWGIWFNPADFQQLITTCTHVTIETLTQEIDNIVIKTVSKQG
SGAEETTQYNNDLTALLEVALDKSNMLPWVADNMYLNSLGYIPWRPCKLTQFCYHTNF
YNTINLLEGTQQNQWSQIKEGIQYDNLQFTPIETSAEIDLLRTGDRWTSGTYHFKCKP
TQLFYHWQSTRHIGAPHPTTSPEQEGQKGQIIQDTNGWQWGDRDNPISASTTVKDFHI
GYSWPEWRWHYSTGGPSINPGSAFSQTPWGSEVGGTRLTQGASEKAIFDYNHGEAEPG
HRDQWWQNNAQQTGQTNWAIKNAHQSELRNATASRETFWTQDYHNTFGPYTAVDDVGI
QYPWGAMWGKEPDTTHKPMMSAHAPFTCQNGPPGQLLVKLAPNYTDSLNNEGLQTNRI
VTFATFWWTGRCTFKAKLRTPRQFNAYQLPGIPSGTNPKKFVPDAIGRFELPFMPGRA
MPNYTY"
misc_feature 2911..4287
/locus_tag="LL81_gp4"
/note="Parvovirus coat protein VP2; Region: Parvo_coat;
pfam00740"
/db_xref="CDD:395599"
ORIGIN
1 atggctctca gcaaagatgt catggatggc atagactgga ttaaaaagaa aagagacaaa
61 caaggcctaa gttttgtctt caaactaaat gatcttcact tcaaaccaac taaagatgga
121 caaggagtca atatcacctg gaaagactac agaaaaaatc caagaaatga tgaaatcaag
181 caagtaattg aactagacca acaaactgtg agtaacaggg atggggatga aaccaaaaaa
241 atctctatca tgaatccacc tcacagaaat gcaatcatac tcacagggtt ggtaaaaaaa
301 actctatttg actatttcaa agtaaaaaac attgaaccaa atgaagttga ttggtttata
361 caaagtgaat taggaaaaga cacaggccta cacatccatg tactagtctg cagtgacaaa
421 atcaacaatc actcaggcaa atggatgcaa aaatactttg cagaaaaatg gggcctatac
481 ctaacactgg tgcttgctat ggacagtgaa cacttacagg ccttactgca acaaaccaaa
541 ttcagaaaac aagttgaaga aaatgaatgg gttgatgtac taaagtacac tcatccacaa
601 accaaaaaag catactgcaa aaacatcaac tttggtgaaa tgattgcaaa ctacttctta
661 atcaaaaaac cagtaataac aaatgatgac aaaggctaca tctacagtgt agacagtgga
721 ttcaaactta acaatctaag cttcaatgac agatacttag ttgctaggca ctgtcaaaat
781 ctcttccgga gacaagatga cagtgaacta accacaatcc aaccacaaca aaaaaaaatg
841 aaaagaatgg tgtctgctaa agaaaaatct attaaagaga cagtagacac tttaactgac
901 aaaagaatca tcaccagaga aaaatggatg ctccaagatc cagacagcta catccaattc
961 atagcacaac ctggtggtga acaaacctgc agtgctgtct tagacatagc aaccttaaga
1021 attgcaacag aaaaaagtgc ctatgaccta atcaaagaac atccaggcaa acttaaacat
1081 ataaaaaaaa ccaaagcctg gaaactaatc aaaaacaaca acatgaatcc acaaaaagtc
1141 taccatgcaa taatgtgctg ccttaacaaa caaatgggca aaagaaatac catcttactc
1201 tgtggacctg caagcacagg aaaaagccta ctagctcaaa aaatagcaaa attagttggt
1261 aacacaggct gctacaatcc aagcaatgcc aacttcccat tcaatgactg tgtaaacaaa
1321 aacctaatct ggatagaaga agcaggcaac ctaggcactc aagttaactc tttcaaagcc
1381 atcatgagtg gccaagcaat cagacttgac caaaaaggca aaggcagcaa atcaattgaa
1441 ccaactccag taatcatgac aaccaatgaa gacatcacca aagtaatagt tggcacagaa
1501 ctcaaaacag aacacagaca accaataatg gatagatgct taagaattga actcaaaaac
1561 aaactaagtg gtgatcatgg cttgttagaa gatactgaac taccagctat cttcaaatac
1621 ctagaaggac atggatttta tccaaccatg tggtcataca tggacagatg gggaaccacg
1681 cctacatggg gcgaaaactg gaatacaaaa gctaaagaag catcttcaca tctcattgaa
1741 caggagacag aagaagaaga aggaccttct gctcctccaa acacaccaac agaatggagt
1801 gcatcttcaa ctgcacaatc aactggtaaa tcaaccaaac caactctagc tcaaagcctt
1861 gatccagatg atcaagaatt tgctcttctc ctaaaagaca ttgaagaaac tgaaagagca
1921 cttgaaacca tccaggaaga agaggagaac attgaagaat tggcggcaac aggatatggc
1981 caaccactgt tctccggtcc ggatgtgaat gccagcaatt agaaaagcta gaggtaagtt
2041 tcactttctc attataacac taaccatgga ggagctaaaa caactctggc gcgctctacc
2101 tgtcttacta ggcttctgcc taatgctaat cttcttccta ttcttcctat ggactttcct
2161 aagttcctac tgcaactgga acaccaaagg caacttagca agacaactca gctctcctaa
2221 agcaagaagc aaaagaacac taatgatgag ctttctacca accttactaa gcttaactct
2281 tgtcttgcta atctggggcc tcttcatctg gcttttctac tttgacaaac aaaggattat
2341 aaatgctata ataataaaaa atgaaaatgg taactatact tttaccatac aacctcttta
2401 ggctgggttc cgcctggata caactacctg ggacccttca atcaagactt cagcaaaaaa
2461 ccaaccaatc catctgacaa agccgcaaga aaacacgatt tggaatacaa caaactcatc
2521 aaacaaggac acaatcctta ctggaattac aatcacgccg acgaggactt tatcaaagaa
2581 actgaccaag caacagactg gggaggaaag tttggtaact ttatctttcg cgccaaaaaa
2641 gcactagctc ctgaactggc gcctccaact aaaaagaaga caaaaaccaa acacaccgaa
2701 ccagaataca gccacaaaca catcaaagca ggcaccaaaa gaggtaagcc attttatctc
2761 tttgttaacc ttgctagaaa aaaagctcgc atgtccgaaa gcaatgaaat tgacgagcaa
2821 ccagctgaac aacagccact ggcagcaact gctgctaaag ctggaggagg tggaggtgga
2881 ggtgggagcg gtgtcgggca cagcactggg aattacaata ataggactat atttcattat
2941 catggtgatg aagttactat catctgccat gcaacaagac atattcacct caatatgtca
3001 ccaacagaag aatacaaaat ctatgacaca aaccatggac cagaatttcc aaacacagga
3061 gaccaaacac aacaaggcag aaacacagtc aatgatagct accatgcaaa agtagaaaca
3121 ccatggtatc taatcaaccc aaacagctgg ggtatatggt tcaatccagc agactttcaa
3181 caactaatta caacatgcac ccatgtcaca atagaaactc taactcaaga aattgacaac
3241 atagtaatca aaacagtaag caaacaaggc tcaggtgctg aagaaacaac acaatacaac
3301 aatgacctaa cagcactgct cgaagtagca ctagacaaaa gcaacatgct accatgggtc
3361 gctgacaaca tgtacctcaa ctcacttggt tacataccat ggagaccatg caaactaact
3421 caattttgct atcacactaa cttctacaac acaatcaact tactagaagg aacacaacaa
3481 aatcaatggt ctcaaatcaa agaaggcatc caatatgaca acctacaatt cacaccaatt
3541 gaaacatcag cagaaataga cctactcaga acaggagaca gatggacatc aggaacatac
3601 cacttcaaat gcaaaccaac acaactattc taccactggc aatcaaccag acacatcgga
3661 gcaccacatc ctacaacctc accagaacaa gaaggacaaa aaggacaaat catccaagac
3721 acaaatggct ggcaatgggg agacagagac aatccaatct ctgccagcac aactgtaaaa
3781 gactttcaca ttggctacag ctggcctgaa tggagatggc attacagcac tggtggacca
3841 tccatcaatc caggcagtgc attcagccaa actccatggg gttcagaagt aggaggaaca
3901 agactaacac aaggtgcatc agaaaaagca atatttgact ataaccatgg agaagcagaa
3961 ccaggtcaca gagaccaatg gtggcaaaac aatgcacaac aaacaggaca aacaaactgg
4021 gccatcaaaa atgcacacca atcagaactc agaaatgcca cagcaagcag agaaacattc
4081 tggacacaag actaccacaa cacattcgga ccatacacag cagtagatga tgtaggcatc
4141 caatatccat ggggagcaat gtggggaaaa gaaccagaca caacacacaa accaatgatg
4201 tctgcacatg ctccattcac ctgtcaaaat ggaccaccag gacaattact agtcaaacta
4261 gcacctaatt acacagactc tttaaacaat gaaggacttc aaaccaacag aatagttact
4321 tttgcaacat tctggtggac aggacgctgc acattcaaag ccaaactaag aactccaaga
4381 caattcaacg cataccaact tccaggaata ccatcaggaa ccaatccaaa aaaatttgta
4441 ccagatgcaa ttggaagatt tgaactacca ttcatgcctg gaagagcaat gccaaactac
4501 acatactaac aatgaactta ctaaccatcc ttatcatttt acttagttac tgttactttt
4561 tatataactt ttataacttc tttaataaat taataagata cttacatagt ttataagtta
4621 gtttataagt tagtttataa gttgtacaac aaggtgctgc tattcacaat gtgaaactat
4681 ccaactaccc ttaccatagt aagctggact tactgtatta atcaatctaa cat
//
